bives 0.1

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data/.gitignore

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+*.gem
+*.rbc
+.bundle
+.config
+.yardoc
+Gemfile.lock
+InstalledFiles
+_yardoc
+coverage
+doc/
+lib/bundler/man
+pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp
+.idea/

data/.ruby-gemset

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+bives

data/.ruby-version

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+ruby-1.9.3-p484

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in bevis.gemspec
+gemspec
+
+gem "open4","1.3.0"
+gem "minitest"

data/LICENSE.txt

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+Copyright (c) 2013 Stuart Owen
+
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.md

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+# Bevis
+
+TODO: Write a gem description
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+    gem 'bevis'
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install bevis
+
+## Usage
+
+TODO: Write usage instructions here
+
+## Contributing
+
+1. Fork it
+2. Create your feature branch (`git checkout -b my-new-feature`)
+3. Commit your changes (`git commit -am 'Add some feature'`)
+4. Push to the branch (`git push origin my-new-feature`)
+5. Create new Pull Request

data/Rakefile

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+require "bundler/gem_tasks"

data/bives.gemspec

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+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'bives/version'
+require "bundler/gem_tasks"
+
+require 'rake/testtask'
+
+Rake::TestTask.new do |t|
+  t.libs << 'lib/bives'
+  t.test_files = FileList['test/*_test.rb']
+  t.verbose = true
+end
+
+Gem::Specification.new do |spec|
+  spec.name          = "bives"
+  spec.version       = Bives::VERSION
+  spec.authors       = ["Stuart Owen"]
+  spec.email         = ["stuart.owen@manchester.ac.uk"]
+  spec.description   = %q{Ruby wrapper for the BiVeS model version comparison tool}
+  spec.summary       = %q{Ruby wrapper to interface with the BiVeS model version comparison tool - http://sems.uni-rostock.de/projects/bives/}
+  spec.homepage      = ""
+  spec.license       = "MIT"
+
+  spec.files         = `git ls-files`.split($/)
+  spec.executables   = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
+  spec.test_files    = spec.files.grep(%r{^(test|spec|features)/})
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.3"
+  spec.add_development_dependency "rake"
+end
+
+
+
+

data/lib/bives/version.rb

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+module Bives
+  VERSION = "0.1"
+end

data/lib/bives.rb

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+require_relative "bives/version"
+require 'open4'
+
+module Bives
+  JAR_FILENAME = "BiVeS-1.1.2-SNAPSHOT-fat.jar"
+  JAR_FILEPATH = File.join File.dirname(__FILE__),"jars","#{JAR_FILENAME}"
+
+  def self.included(mod)
+    unless File.exist?(JAR_FILEPATH)
+      raise "Jar file #{JAR_FILEPATH} not found"
+    end
+  end
+
+  def compare file1,file2,opts=["reportHtml"]
+    cmd_opts = opts.collect{|o| "--#{o}"}.join(" ")
+    command = "java -jar #{JAR_FILEPATH} #{cmd_opts} #{file1} #{file2}"
+
+    err_message = ""
+    output = ""
+    status = Open4::popen4(command) do |pid, stdin, stdout, stderr|
+
+
+      while ((line = stdout.gets) != nil) do
+        output << line
+      end
+      stdout.close
+
+      while ((line=stderr.gets)!= nil) do
+        err_message << line
+      end
+      stderr.close
+    end
+
+    if status.to_i != 0
+      raise err_message
+    end
+
+    output.strip
+  end
+end

data/test/bives_test.rb

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+require 'minitest/unit'
+require "minitest/autorun"
+require_relative '../lib/bives'
+
+class BivesTest < MiniTest::Unit::TestCase
+  include Bives
+
+  def setup
+    @potato1 = File.expand_path('../models/potato1.xml', __FILE__)
+    @potato2 = File.expand_path('../models/potato2.xml', __FILE__)
+
+    assert File.exist?(@potato1)
+    assert File.exist?(@potato2)
+  end
+
+  def test_compare
+    #puts compare(@potato1, @potato2)
+    puts compare(@potato1,@potato2,["reportHtml"])
+  end
+
+end