bives 0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (16) hide show
  1. checksums.yaml +15 -0
  2. data/.gitignore +18 -0
  3. data/.ruby-gemset +1 -0
  4. data/.ruby-version +1 -0
  5. data/Gemfile +7 -0
  6. data/LICENSE.txt +22 -0
  7. data/README.md +29 -0
  8. data/Rakefile +1 -0
  9. data/bives.gemspec +36 -0
  10. data/lib/bives/version.rb +3 -0
  11. data/lib/bives.rb +40 -0
  12. data/lib/jars/BiVeS-1.1.2-SNAPSHOT-fat.jar +0 -0
  13. data/test/bives_test.rb +21 -0
  14. data/test/models/potato1.xml +1819 -0
  15. data/test/models/potato2.xml +1764 -0
  16. metadata +90 -0
data/test/models/potato1.xml ADDED
@@ -0,0 +1,1819 @@
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <!-- Created by JWS2SBML on 2013/06/07 14:15:10-->
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+ <sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4">
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+ <model name="assmus">
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+ <listOfCompartments>
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+ <compartment id="compartment" name="compartment" spatialDimensions="3" size="1" constant="true"/>
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+ </listOfCompartments>
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+ <listOfSpecies>
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+ <species id="ATPam" name="ATPam" compartment="compartment" initialConcentration="150" boundaryCondition="false"/>
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+ <species id="G1Pam" name="G1Pam" compartment="compartment" initialConcentration="30" boundaryCondition="false"/>
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+ <species id="ADPGam" name="ADPGam" compartment="compartment" initialConcentration="100" boundaryCondition="false"/>
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+ <species id="PPam" name="PPam" compartment="compartment" initialConcentration="5" boundaryCondition="false"/>
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+ <species id="xstarch" name="xstarch" compartment="compartment" initialConcentration="1000000" boundaryCondition="true" constant="true"/>
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+ <species id="ADPam" name="ADPam" compartment="compartment" initialConcentration="100" boundaryCondition="false"/>
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+ <species id="Pam" name="Pam" compartment="compartment" initialConcentration="2000" boundaryCondition="false"/>
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+ <species id="Glucoseam" name="Glucoseam" compartment="compartment" initialConcentration="3000" boundaryCondition="false"/>
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+ <species id="Glucosecyt" name="Glucosecyt" compartment="compartment" initialConcentration="150" boundaryCondition="false"/>
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+ <species id="G6Pam" name="G6Pam" compartment="compartment" initialConcentration="550" boundaryCondition="false"/>
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+ <species id="Pcyt" name="Pcyt" compartment="compartment" initialConcentration="2000" boundaryCondition="false"/>
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+ <species id="G6Pcyt" name="G6Pcyt" compartment="compartment" initialConcentration="500" boundaryCondition="false"/>
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+ <species id="G1Pcyt" name="G1Pcyt" compartment="compartment" initialConcentration="30" boundaryCondition="false"/>
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+ <species id="F6Pcyt" name="F6Pcyt" compartment="compartment" initialConcentration="160" boundaryCondition="false"/>
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+ <species id="ATPcyt" name="ATPcyt" compartment="compartment" initialConcentration="200" boundaryCondition="false"/>
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+ <species id="ADPcyt" name="ADPcyt" compartment="compartment" initialConcentration="180" boundaryCondition="false"/>
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+ <species id="F16BPcyt" name="F16BPcyt" compartment="compartment" initialConcentration="1" boundaryCondition="false"/>
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+ <species id="PPcyt" name="PPcyt" compartment="compartment" initialConcentration="1" boundaryCondition="false"/>
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+ <species id="DHAPcyt" name="DHAPcyt" compartment="compartment" initialConcentration="5" boundaryCondition="false"/>
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+ <species id="GAPcyt" name="GAPcyt" compartment="compartment" initialConcentration="1" boundaryCondition="false"/>
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+ <species id="PGA3cyt" name="PGA3cyt" compartment="compartment" initialConcentration="150" boundaryCondition="false"/>
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+ <species id="PGA3am" name="PGA3am" compartment="compartment" initialConcentration="160" boundaryCondition="false"/>
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+ <species id="PGA2cyt" name="PGA2cyt" compartment="compartment" initialConcentration="20" boundaryCondition="false"/>
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+ <species id="PEPcyt" name="PEPcyt" compartment="compartment" initialConcentration="10" boundaryCondition="false"/>
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+ <species id="xpyruvate" name="xpyruvate" compartment="compartment" initialConcentration="10" boundaryCondition="true" constant="true"/>
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+ <species id="UTPcyt" name="UTPcyt" compartment="compartment" initialConcentration="20" boundaryCondition="false"/>
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+ <species id="UDPGcyt" name="UDPGcyt" compartment="compartment" initialConcentration="870" boundaryCondition="false"/>
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+ <species id="Sucrose" name="Sucrose" compartment="compartment" initialConcentration="88000" boundaryCondition="false"/>
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+ <species id="UDPcyt" name="UDPcyt" compartment="compartment" initialConcentration="10" boundaryCondition="false"/>
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+ <species id="Fructose" name="Fructose" compartment="compartment" initialConcentration="20" boundaryCondition="false"/>
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+ <species id="xsucrose" name="xsucrose" compartment="compartment" initialConcentration="90000" boundaryCondition="true" constant="true"/>
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+ </listOfSpecies>
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+ <listOfParameters>
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+ <parameter id="compartment" name="compartment" value="1" constant="true"/>
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+ <parameter id="EXTERNAL" name="EXTERNAL" value="0" constant="true"/>
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+ <parameter id="KaPGA3AGPase" name="KaPGA3AGPase" value="10" constant="true"/>
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+ <parameter id="kATPcons" name="kATPcons" value="3" constant="true"/>
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+ <parameter id="kbackwardAT" name="kbackwardAT" value="0.002" constant="true"/>
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+ <parameter id="kbackwardG6Pexp" name="kbackwardG6Pexp" value="0.01" constant="true"/>
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+ <parameter id="kbackwardGexp" name="kbackwardGexp" value="0.001" constant="true"/>
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+ <parameter id="kbackwardNDPK" name="kbackwardNDPK" value="0.001" constant="true"/>
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+ <parameter id="kbackwardPexp" name="kbackwardPexp" value="0.1" constant="true"/>
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+ <parameter id="kbackwardPGA3imp" name="kbackwardPGA3imp" value="0.01" constant="true"/>
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+ <parameter id="kbackwardSucUpt" name="kbackwardSucUpt" value="0.01" constant="true"/>
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+ <parameter id="Keqald" name="Keqald" value="81" constant="true"/>
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+ <parameter id="KeqcPGM" name="KeqcPGM" value="17" constant="true"/>
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+ <parameter id="Keqeno" name="Keqeno" value="6.3" constant="true"/>
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+ <parameter id="KeqGAPDH" name="KeqGAPDH" value="1.724" constant="true"/>
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+ <parameter id="KeqPFP" name="KeqPFP" value="3.3" constant="true"/>
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+ <parameter id="KeqPGI" name="KeqPGI" value="0.25" constant="true"/>
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+ <parameter id="KeqPGlyM" name="KeqPGlyM" value="0.16" constant="true"/>
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+ <parameter id="KeqpPGM" name="KeqpPGM" value="17" constant="true"/>
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+ <parameter id="KeqpPPase" name="KeqpPPase" value="750000" constant="true"/>
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+ <parameter id="KeqSPSSPP" name="KeqSPSSPP" value="7770" constant="true"/>
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+ <parameter id="KeqSSynth" name="KeqSSynth" value="2.4" constant="true"/>
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+ <parameter id="KeqStPase" name="KeqStPase" value="0.18" constant="true"/>
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+ <parameter id="KeqTPI" name="KeqTPI" value="0.0455" constant="true"/>
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+ <parameter id="KeqUGPase" name="KeqUGPase" value="0.15" constant="true"/>
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+ <parameter id="kforwardAT" name="kforwardAT" value="0.002" constant="true"/>
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+ <parameter id="kforwardG6Pexp" name="kforwardG6Pexp" value="0.01" constant="true"/>
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+ <parameter id="kforwardGexp" name="kforwardGexp" value="0.001" constant="true"/>
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+ <parameter id="kforwardNDPK" name="kforwardNDPK" value="0.001" constant="true"/>
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+ <parameter id="kforwardPexp" name="kforwardPexp" value="0.3" constant="true"/>
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+ <parameter id="kforwardPGA3imp" name="kforwardPGA3imp" value="0.01" constant="true"/>
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+ <parameter id="kforwardSucUpt" name="kforwardSucUpt" value="0.01" constant="true"/>
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+ <parameter id="KiADPHK1" name="KiADPHK1" value="20" constant="true"/>
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+ <parameter id="KiADPHK2" name="KiADPHK2" value="100" constant="true"/>
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+ <parameter id="KiF16BPPGI" name="KiF16BPPGI" value="7500" constant="true"/>
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+ <parameter id="KiFructoseFK" name="KiFructoseFK" value="5000" constant="true"/>
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+ <parameter id="KiFructoseinv" name="KiFructoseinv" value="180" constant="true"/>
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+ <parameter id="KiG6PHK1" name="KiG6PHK1" value="4100" constant="true"/>
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+ <parameter id="KiGAPald" name="KiGAPald" value="1000" constant="true"/>
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+ <parameter id="KiGlucosedegr" name="KiGlucosedegr" value="100" constant="true"/>
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+ <parameter id="KiGlucoseinv" name="KiGlucoseinv" value="1000" constant="true"/>
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+ <parameter id="KiPAGPase" name="KiPAGPase" value="160" constant="true"/>
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+ <parameter id="KiPEPPFK" name="KiPEPPFK" value="18" constant="true"/>
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+ <parameter id="KiPEPPGI" name="KiPEPPGI" value="1100" constant="true"/>
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+ <parameter id="KiPSPP" name="KiPSPP" value="4000" constant="true"/>
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+ <parameter id="KiSSynthGlucose" name="KiSSynthGlucose" value="12000" constant="true"/>
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+ <parameter id="KiSucroseSPSSPP" name="KiSucroseSPSSPP" value="5000" constant="true"/>
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+ <parameter id="KiUDPSPS" name="KiUDPSPS" value="1000" constant="true"/>
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+ <parameter id="KmADPFK" name="KmADPFK" value="13" constant="true"/>
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+ <parameter id="KmADPGAGPase" name="KmADPGAGPase" value="280" constant="true"/>
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+ <parameter id="KmADPGStSynth" name="KmADPGStSynth" value="150" constant="true"/>
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+ <parameter id="KmADPPK" name="KmADPPK" value="20" constant="true"/>
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+ <parameter id="KmATPAGPase" name="KmATPAGPase" value="180" constant="true"/>
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+ <parameter id="KmATPFK" name="KmATPFK" value="35" constant="true"/>
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+ <parameter id="KmATPHK1" name="KmATPHK1" value="80" constant="true"/>
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+ <parameter id="KmATPHK2" name="KmATPHK2" value="280" constant="true"/>
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+ <parameter id="KmATPPK" name="KmATPPK" value="86" constant="true"/>
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+ <parameter id="KmDHAPald" name="KmDHAPald" value="100" constant="true"/>
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+ <parameter id="KmDHAPTPI" name="KmDHAPTPI" value="880" constant="true"/>
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+ <parameter id="KmF16BPald" name="KmF16BPald" value="6" constant="true"/>
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+ <parameter id="KmF16BPPFP" name="KmF16BPPFP" value="10" constant="true"/>
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+ <parameter id="KmF6PFK" name="KmF6PFK" value="1300" constant="true"/>
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+ <parameter id="KmF6PPFK" name="KmF6PPFK" value="290" constant="true"/>
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+ <parameter id="KmF6PPFP" name="KmF6PPFP" value="500" constant="true"/>
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+ <parameter id="KmF6PPGI" name="KmF6PPGI" value="150" constant="true"/>
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+ <parameter id="KmF6PSPS" name="KmF6PSPS" value="5000" constant="true"/>
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+ <parameter id="KmF6PSPSSPP" name="KmF6PSPSSPP" value="900" constant="true"/>
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+ <parameter id="KmFructoseFK" name="KmFructoseFK" value="90" constant="true"/>
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+ <parameter id="KmFructoseHK1" name="KmFructoseHK1" value="11000" constant="true"/>
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+ <parameter id="KmFructoseHK2" name="KmFructoseHK2" value="22000" constant="true"/>
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+ <parameter id="KmG1PAGPase" name="KmG1PAGPase" value="100" constant="true"/>
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+ <parameter id="KmG1PStPase" name="KmG1PStPase" value="2600" constant="true"/>
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+ <parameter id="KmG1PUGPase" name="KmG1PUGPase" value="80" constant="true"/>
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+ <parameter id="KmG6PPGI" name="KmG6PPGI" value="270" constant="true"/>
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+ <parameter id="KmGAPald" name="KmGAPald" value="100" constant="true"/>
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+ <parameter id="KmGAPTPI" name="KmGAPTPI" value="440" constant="true"/>
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+ <parameter id="KmGlucoseHK1" name="KmGlucoseHK1" value="41" constant="true"/>
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+ <parameter id="KmGlucoseHK2" name="KmGlucoseHK2" value="130" constant="true"/>
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+ <parameter id="KmPEPeno" name="KmPEPeno" value="150" constant="true"/>
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+ <parameter id="KmPEPPK" name="KmPEPPK" value="20" constant="true"/>
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+ <parameter id="KmPGA2eno" name="KmPGA2eno" value="150" constant="true"/>
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+ <parameter id="KmPGA2PGlyM" name="KmPGA2PGlyM" value="60" constant="true"/>
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+ <parameter id="KmPGA3PGlyM" name="KmPGA3PGlyM" value="330" constant="true"/>
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+ <parameter id="KmPPAGPase" name="KmPPAGPase" value="260" constant="true"/>
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+ <parameter id="KmPPFP" name="KmPPFP" value="10" constant="true"/>
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+ <parameter id="KmPPPFP" name="KmPPPFP" value="25" constant="true"/>
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+ <parameter id="KmPPUGPase" name="KmPPUGPase" value="130" constant="true"/>
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+ <parameter id="KmPStPase" name="KmPStPase" value="6200" constant="true"/>
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+ <parameter id="KmpyruvatePK" name="KmpyruvatePK" value="1000" constant="true"/>
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+ <parameter id="KmSSynthFructose" name="KmSSynthFructose" value="5900" constant="true"/>
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+ <parameter id="KmSSynthSucrose" name="KmSSynthSucrose" value="55000" constant="true"/>
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+ <parameter id="KmSSynthUDP" name="KmSSynthUDP" value="140" constant="true"/>
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+ <parameter id="KmSSynthUDPG" name="KmSSynthUDPG" value="1650" constant="true"/>
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+ <parameter id="KmSucroseinv" name="KmSucroseinv" value="28000" constant="true"/>
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+ <parameter id="KmUDPGSPS" name="KmUDPGSPS" value="3000" constant="true"/>
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+ <parameter id="KmUDPGSPSSPP" name="KmUDPGSPSSPP" value="2000" constant="true"/>
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+ <parameter id="KmUDPGUGPase" name="KmUDPGUGPase" value="140" constant="true"/>
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+ <parameter id="KmUTPUGPase" name="KmUTPUGPase" value="120" constant="true"/>
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+ <parameter id="LPFK" name="LPFK" value="1" constant="true"/>
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+ <parameter id="nPFK" name="nPFK" value="2" constant="true"/>
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+ <parameter id="VappSPSSPP" name="VappSPSSPP" value="797" constant="true"/>
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+ <parameter id="VAT" name="VAT" value="1" constant="true"/>
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+ <parameter id="VATPcons" name="VATPcons" value="1" constant="true"/>
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+ <parameter id="VforwardStPase" name="VforwardStPase" value="200" constant="true"/>
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+ <parameter id="VforwardUGPase" name="VforwardUGPase" value="8100" constant="true"/>
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+ <parameter id="VG6Pexp" name="VG6Pexp" value="1" constant="true"/>
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+ <parameter id="VGexp" name="VGexp" value="1" constant="true"/>
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+ <parameter id="VmaxAGPase" name="VmaxAGPase" value="312" constant="true"/>
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+ <parameter id="Vmaxald" name="Vmaxald" value="430" constant="true"/>
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+ <parameter id="VmaxcPGM" name="VmaxcPGM" value="1842" constant="true"/>
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+ <parameter id="Vmaxdegr" name="Vmaxdegr" value="114" constant="true"/>
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+ <parameter id="Vmaxeno" name="Vmaxeno" value="448" constant="true"/>
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+ <parameter id="VmaxFK" name="VmaxFK" value="376" constant="true"/>
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+ <parameter id="VmaxGAPDH" name="VmaxGAPDH" value="301" constant="true"/>
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+ <parameter id="VmaxGK" name="VmaxGK" value="160" constant="true"/>
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+ <parameter id="VmaxHK1" name="VmaxHK1" value="80" constant="true"/>
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+ <parameter id="VmaxHK2" name="VmaxHK2" value="80" constant="true"/>
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+ <parameter id="Vmaxinv" name="Vmaxinv" value="33" constant="true"/>
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+ <parameter id="VmaxPFK" name="VmaxPFK" value="135" constant="true"/>
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+ <parameter id="VmaxPFP" name="VmaxPFP" value="1266" constant="true"/>
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+ <parameter id="VmaxPGI" name="VmaxPGI" value="1086" constant="true"/>
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+ <parameter id="VmaxPGlyM" name="VmaxPGlyM" value="541" constant="true"/>
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+ <parameter id="VmaxPK" name="VmaxPK" value="127" constant="true"/>
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+ <parameter id="VmaxpPGM" name="VmaxpPGM" value="1542" constant="true"/>
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+ <parameter id="VmaxpPPase" name="VmaxpPPase" value="500" constant="true"/>
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+ <parameter id="VmaxSPS" name="VmaxSPS" value="1000" constant="true"/>
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+ <parameter id="VmaxSSynth" name="VmaxSSynth" value="100" constant="true"/>
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+ <parameter id="VmaxStSynth" name="VmaxStSynth" value="171" constant="true"/>
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+ <parameter id="VmaxTPI" name="VmaxTPI" value="4438" constant="true"/>
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+ <parameter id="VNDPK" name="VNDPK" value="1" constant="true"/>
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+ <parameter id="VPexp" name="VPexp" value="1" constant="true"/>
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+ <parameter id="VPGA3imp" name="VPGA3imp" value="1" constant="true"/>
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+ <parameter id="VratioSPSSPP" name="VratioSPSSPP" value="1000" constant="true"/>
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+ <parameter id="VSucUpt" name="VSucUpt" value="1" constant="true"/>
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+ </listOfParameters>
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+ <listOfReactions>
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+ <reaction id="v1" name="v1">
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+ <listOfReactants>
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+ <speciesReference species="ATPam" stoichiometry="1"/>
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+ <speciesReference species="G1Pam" stoichiometry="1"/>
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+ </listOfReactants>
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+ <listOfProducts>
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+ <speciesReference species="ADPGam" stoichiometry="1"/>
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+ <speciesReference species="PPam" stoichiometry="1"/>
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+ </listOfProducts>
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+ <listOfModifiers>
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+ <modifierSpeciesReference species="PGA3am"/>
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+ <modifierSpeciesReference species="Pam"/>
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+ </listOfModifiers>
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+ <kineticLaw>
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+ <math xmlns="http://www.w3.org/1998/Math/MathML">
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+ <apply>
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+ <divide/>
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+ <apply>
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+ <times/>
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+ <ci> VmaxAGPase </ci>
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+ <apply>
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+ <plus/>
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+ <cn type="integer"> 1 </cn>
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+ <apply>
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+ <divide/>
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+ <ci> PGA3am </ci>
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+ <ci> KaPGA3AGPase </ci>
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+ </apply>
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+ </apply>
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+ <apply>
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+ <minus/>
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+ <apply>
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+ <times/>
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+ <ci> ATPam </ci>
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+ <ci> G1Pam </ci>
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+ </apply>
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+ <apply>
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+ <times/>
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+ <ci> ADPGam </ci>
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+ <ci> PPam </ci>
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+ </apply>
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+ </apply>
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+ </apply>
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+ <apply>
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+ <times/>
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+ <ci> compartment </ci>
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+ <apply>
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+ <plus/>
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+ <apply>
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+ <times/>
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+ <ci> KmATPAGPase </ci>
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+ <apply>
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+ <plus/>
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+ <cn type="integer"> 1 </cn>
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+ <apply>
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+ <divide/>
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+ <ci> ADPGam </ci>
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+ <ci> KmADPGAGPase </ci>
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+ </apply>
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+ </apply>
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+ </apply>
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+ <ci> ATPam </ci>
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+ </apply>
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+ <apply>
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+ <plus/>
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+ <cn type="integer"> 1 </cn>
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+ <apply>
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+ <divide/>
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+ <ci> Pam </ci>
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+ <ci> KiPAGPase </ci>
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+ </apply>
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+ </apply>
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+ <apply>
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+ <plus/>
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+ <ci> G1Pam </ci>
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+ <apply>
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+ <times/>
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+ <ci> KmG1PAGPase </ci>
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+ <apply>
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+ <plus/>
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+ <cn type="integer"> 1 </cn>
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+ <apply>
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+ <divide/>
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+ <ci> PPam </ci>
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+ <ci> KmPPAGPase </ci>
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+ </apply>
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+ </apply>
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+ </apply>
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+ </apply>
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+ </apply>
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+ </apply>
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+ </math>
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+ </kineticLaw>
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+ </reaction>
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+ <reaction id="v2" name="v2">
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+ <listOfReactants>
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+ <speciesReference species="ADPGam" stoichiometry="1"/>
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+ <speciesReference species="xstarch" stoichiometry="1"/>
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+ </listOfReactants>
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+ <listOfProducts>
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+ <speciesReference species="ADPam" stoichiometry="1"/>
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+ </listOfProducts>
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+ <kineticLaw>
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+ <math xmlns="http://www.w3.org/1998/Math/MathML">
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+ <apply>
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+ <divide/>
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+ <apply>
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+ <times/>
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+ <ci> VmaxStSynth </ci>
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+ <ci> ADPGam </ci>
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+ </apply>
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+ <apply>
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+ <times/>
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+ <ci> compartment </ci>
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+ <apply>
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+ <plus/>
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+ <ci> KmADPGStSynth </ci>
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+ <ci> ADPGam </ci>
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+ </apply>
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+ </apply>
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+ </apply>
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+ </math>
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+ </kineticLaw>
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+ </reaction>
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+ <reaction id="v3" name="v3">
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+ <listOfReactants>
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+ <speciesReference species="PPam" stoichiometry="1"/>
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+ </listOfReactants>
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+ <listOfProducts>
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+ <speciesReference species="Pam" stoichiometry="2"/>
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+ </listOfProducts>
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+ <kineticLaw>
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+ <math xmlns="http://www.w3.org/1998/Math/MathML">
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+ <apply>
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+ <divide/>
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+ <apply>
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+ <times/>
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+ <ci> VmaxpPPase </ci>
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+ <apply>
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+ <minus/>
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+ <cn type="integer"> 1 </cn>
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+ <apply>
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+ <divide/>
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+ <apply>
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+ <power/>
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+ <ci> Pam </ci>
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+ <cn type="integer"> 2 </cn>
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+ </apply>
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+ <apply>
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+ <times/>
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+ <ci> KeqpPPase </ci>
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+ <ci> PPam </ci>
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+ </apply>
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+ </apply>
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+ </apply>
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+ </apply>
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+ <ci> compartment </ci>
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+ </apply>
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+ </math>
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+ </kineticLaw>
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+ </reaction>
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+ <reaction id="v4" name="v4">
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+ <listOfReactants>
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+ <speciesReference species="Pam" stoichiometry="1"/>
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+ <speciesReference species="xstarch" stoichiometry="1"/>
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+ </listOfReactants>
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+ <listOfProducts>
345
+ <speciesReference species="G1Pam" stoichiometry="1"/>
346
+ </listOfProducts>
347
+ <kineticLaw>
348
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
349
+ <apply>
350
+ <divide/>
351
+ <apply>
352
+ <times/>
353
+ <ci> VforwardStPase </ci>
354
+ <apply>
355
+ <plus/>
356
+ <apply>
357
+ <minus/>
358
+ <apply>
359
+ <divide/>
360
+ <ci> G1Pam </ci>
361
+ <ci> KeqStPase </ci>
362
+ </apply>
363
+ </apply>
364
+ <ci> Pam </ci>
365
+ </apply>
366
+ </apply>
367
+ <apply>
368
+ <times/>
369
+ <ci> compartment </ci>
370
+ <apply>
371
+ <plus/>
372
+ <ci> KmPStPase </ci>
373
+ <apply>
374
+ <divide/>
375
+ <apply>
376
+ <times/>
377
+ <ci> KmPStPase </ci>
378
+ <ci> G1Pam </ci>
379
+ </apply>
380
+ <ci> KmG1PStPase </ci>
381
+ </apply>
382
+ <ci> Pam </ci>
383
+ </apply>
384
+ </apply>
385
+ </apply>
386
+ </math>
387
+ </kineticLaw>
388
+ </reaction>
389
+ <reaction id="v5" name="v5">
390
+ <listOfReactants>
391
+ <speciesReference species="xstarch" stoichiometry="1"/>
392
+ </listOfReactants>
393
+ <listOfProducts>
394
+ <speciesReference species="Glucoseam" stoichiometry="1"/>
395
+ </listOfProducts>
396
+ <kineticLaw>
397
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
398
+ <apply>
399
+ <divide/>
400
+ <ci> Vmaxdegr </ci>
401
+ <apply>
402
+ <times/>
403
+ <ci> compartment </ci>
404
+ <apply>
405
+ <plus/>
406
+ <cn type="integer"> 1 </cn>
407
+ <apply>
408
+ <divide/>
409
+ <ci> Glucoseam </ci>
410
+ <ci> KiGlucosedegr </ci>
411
+ </apply>
412
+ </apply>
413
+ </apply>
414
+ </apply>
415
+ </math>
416
+ </kineticLaw>
417
+ </reaction>
418
+ <reaction id="v6" name="v6">
419
+ <listOfReactants>
420
+ <speciesReference species="Glucoseam" stoichiometry="1"/>
421
+ </listOfReactants>
422
+ <listOfProducts>
423
+ <speciesReference species="Glucosecyt" stoichiometry="1"/>
424
+ </listOfProducts>
425
+ <kineticLaw>
426
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
427
+ <apply>
428
+ <divide/>
429
+ <apply>
430
+ <times/>
431
+ <ci> VGexp </ci>
432
+ <apply>
433
+ <minus/>
434
+ <apply>
435
+ <times/>
436
+ <ci> kforwardGexp </ci>
437
+ <ci> Glucoseam </ci>
438
+ </apply>
439
+ <apply>
440
+ <times/>
441
+ <ci> kbackwardGexp </ci>
442
+ <ci> Glucosecyt </ci>
443
+ </apply>
444
+ </apply>
445
+ </apply>
446
+ <ci> compartment </ci>
447
+ </apply>
448
+ </math>
449
+ </kineticLaw>
450
+ </reaction>
451
+ <reaction id="v7" name="v7">
452
+ <listOfReactants>
453
+ <speciesReference species="G6Pam" stoichiometry="1"/>
454
+ <speciesReference species="Pcyt" stoichiometry="1"/>
455
+ </listOfReactants>
456
+ <listOfProducts>
457
+ <speciesReference species="G6Pcyt" stoichiometry="1"/>
458
+ <speciesReference species="Pam" stoichiometry="1"/>
459
+ </listOfProducts>
460
+ <kineticLaw>
461
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
462
+ <apply>
463
+ <divide/>
464
+ <apply>
465
+ <times/>
466
+ <ci> VG6Pexp </ci>
467
+ <apply>
468
+ <plus/>
469
+ <apply>
470
+ <minus/>
471
+ <apply>
472
+ <times/>
473
+ <ci> kbackwardG6Pexp </ci>
474
+ <ci> G6Pcyt </ci>
475
+ <ci> Pam </ci>
476
+ </apply>
477
+ </apply>
478
+ <apply>
479
+ <times/>
480
+ <ci> kforwardG6Pexp </ci>
481
+ <ci> G6Pam </ci>
482
+ <ci> Pcyt </ci>
483
+ </apply>
484
+ </apply>
485
+ </apply>
486
+ <ci> compartment </ci>
487
+ </apply>
488
+ </math>
489
+ </kineticLaw>
490
+ </reaction>
491
+ <reaction id="v8" name="v8">
492
+ <listOfReactants>
493
+ <speciesReference species="G1Pam" stoichiometry="1"/>
494
+ </listOfReactants>
495
+ <listOfProducts>
496
+ <speciesReference species="G6Pam" stoichiometry="1"/>
497
+ </listOfProducts>
498
+ <kineticLaw>
499
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
500
+ <apply>
501
+ <divide/>
502
+ <apply>
503
+ <times/>
504
+ <ci> VmaxpPGM </ci>
505
+ <apply>
506
+ <minus/>
507
+ <cn type="integer"> 1 </cn>
508
+ <apply>
509
+ <divide/>
510
+ <ci> G6Pam </ci>
511
+ <apply>
512
+ <times/>
513
+ <ci> KeqpPGM </ci>
514
+ <ci> G1Pam </ci>
515
+ </apply>
516
+ </apply>
517
+ </apply>
518
+ </apply>
519
+ <ci> compartment </ci>
520
+ </apply>
521
+ </math>
522
+ </kineticLaw>
523
+ </reaction>
524
+ <reaction id="v9" name="v9">
525
+ <listOfReactants>
526
+ <speciesReference species="G1Pcyt" stoichiometry="1"/>
527
+ </listOfReactants>
528
+ <listOfProducts>
529
+ <speciesReference species="G6Pcyt" stoichiometry="1"/>
530
+ </listOfProducts>
531
+ <kineticLaw>
532
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
533
+ <apply>
534
+ <divide/>
535
+ <apply>
536
+ <times/>
537
+ <ci> VmaxcPGM </ci>
538
+ <apply>
539
+ <minus/>
540
+ <cn type="integer"> 1 </cn>
541
+ <apply>
542
+ <divide/>
543
+ <ci> G6Pcyt </ci>
544
+ <apply>
545
+ <times/>
546
+ <ci> KeqcPGM </ci>
547
+ <ci> G1Pcyt </ci>
548
+ </apply>
549
+ </apply>
550
+ </apply>
551
+ </apply>
552
+ <ci> compartment </ci>
553
+ </apply>
554
+ </math>
555
+ </kineticLaw>
556
+ </reaction>
557
+ <reaction id="v10" name="v10">
558
+ <listOfReactants>
559
+ <speciesReference species="G6Pcyt" stoichiometry="1"/>
560
+ </listOfReactants>
561
+ <listOfProducts>
562
+ <speciesReference species="F6Pcyt" stoichiometry="1"/>
563
+ </listOfProducts>
564
+ <listOfModifiers>
565
+ <modifierSpeciesReference species="F16BPcyt"/>
566
+ <modifierSpeciesReference species="PEPcyt"/>
567
+ </listOfModifiers>
568
+ <kineticLaw>
569
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
570
+ <apply>
571
+ <divide/>
572
+ <apply>
573
+ <times/>
574
+ <ci> VmaxPGI </ci>
575
+ <apply>
576
+ <plus/>
577
+ <apply>
578
+ <minus/>
579
+ <apply>
580
+ <divide/>
581
+ <ci> F6Pcyt </ci>
582
+ <ci> KeqPGI </ci>
583
+ </apply>
584
+ </apply>
585
+ <ci> G6Pcyt </ci>
586
+ </apply>
587
+ </apply>
588
+ <apply>
589
+ <times/>
590
+ <ci> compartment </ci>
591
+ <apply>
592
+ <plus/>
593
+ <ci> KmG6PPGI </ci>
594
+ <apply>
595
+ <divide/>
596
+ <apply>
597
+ <times/>
598
+ <ci> KmG6PPGI </ci>
599
+ <ci> F16BPcyt </ci>
600
+ </apply>
601
+ <ci> KiF16BPPGI </ci>
602
+ </apply>
603
+ <apply>
604
+ <divide/>
605
+ <apply>
606
+ <times/>
607
+ <ci> KmG6PPGI </ci>
608
+ <ci> F6Pcyt </ci>
609
+ </apply>
610
+ <ci> KmF6PPGI </ci>
611
+ </apply>
612
+ <ci> G6Pcyt </ci>
613
+ <apply>
614
+ <divide/>
615
+ <apply>
616
+ <times/>
617
+ <ci> KmG6PPGI </ci>
618
+ <ci> PEPcyt </ci>
619
+ </apply>
620
+ <ci> KiPEPPGI </ci>
621
+ </apply>
622
+ </apply>
623
+ </apply>
624
+ </apply>
625
+ </math>
626
+ </kineticLaw>
627
+ </reaction>
628
+ <reaction id="v11" name="v11">
629
+ <listOfReactants>
630
+ <speciesReference species="ATPcyt" stoichiometry="1"/>
631
+ <speciesReference species="F6Pcyt" stoichiometry="1"/>
632
+ </listOfReactants>
633
+ <listOfProducts>
634
+ <speciesReference species="ADPcyt" stoichiometry="1"/>
635
+ <speciesReference species="F16BPcyt" stoichiometry="1"/>
636
+ </listOfProducts>
637
+ <listOfModifiers>
638
+ <modifierSpeciesReference species="PEPcyt"/>
639
+ </listOfModifiers>
640
+ <kineticLaw>
641
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
642
+ <apply>
643
+ <divide/>
644
+ <apply>
645
+ <times/>
646
+ <ci> VmaxPFK </ci>
647
+ <ci> F6Pcyt </ci>
648
+ <apply>
649
+ <power/>
650
+ <apply>
651
+ <plus/>
652
+ <cn type="integer"> 1 </cn>
653
+ <apply>
654
+ <divide/>
655
+ <ci> F6Pcyt </ci>
656
+ <ci> KmF6PPFK </ci>
657
+ </apply>
658
+ </apply>
659
+ <apply>
660
+ <plus/>
661
+ <cn type="integer"> -1 </cn>
662
+ <ci> nPFK </ci>
663
+ </apply>
664
+ </apply>
665
+ </apply>
666
+ <apply>
667
+ <times/>
668
+ <ci> compartment </ci>
669
+ <ci> KmF6PPFK </ci>
670
+ <apply>
671
+ <plus/>
672
+ <apply>
673
+ <power/>
674
+ <apply>
675
+ <plus/>
676
+ <cn type="integer"> 1 </cn>
677
+ <apply>
678
+ <divide/>
679
+ <ci> F6Pcyt </ci>
680
+ <ci> KmF6PPFK </ci>
681
+ </apply>
682
+ </apply>
683
+ <ci> nPFK </ci>
684
+ </apply>
685
+ <apply>
686
+ <times/>
687
+ <ci> LPFK </ci>
688
+ <apply>
689
+ <power/>
690
+ <apply>
691
+ <plus/>
692
+ <cn type="integer"> 1 </cn>
693
+ <apply>
694
+ <divide/>
695
+ <ci> PEPcyt </ci>
696
+ <ci> KiPEPPFK </ci>
697
+ </apply>
698
+ </apply>
699
+ <ci> nPFK </ci>
700
+ </apply>
701
+ </apply>
702
+ </apply>
703
+ </apply>
704
+ </apply>
705
+ </math>
706
+ </kineticLaw>
707
+ </reaction>
708
+ <reaction id="v12" name="v12">
709
+ <listOfReactants>
710
+ <speciesReference species="F6Pcyt" stoichiometry="1"/>
711
+ <speciesReference species="PPcyt" stoichiometry="1"/>
712
+ </listOfReactants>
713
+ <listOfProducts>
714
+ <speciesReference species="F16BPcyt" stoichiometry="1"/>
715
+ <speciesReference species="Pcyt" stoichiometry="1"/>
716
+ </listOfProducts>
717
+ <kineticLaw>
718
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
719
+ <apply>
720
+ <divide/>
721
+ <apply>
722
+ <times/>
723
+ <ci> VmaxPFP </ci>
724
+ <apply>
725
+ <plus/>
726
+ <apply>
727
+ <minus/>
728
+ <apply>
729
+ <divide/>
730
+ <apply>
731
+ <times/>
732
+ <ci> F16BPcyt </ci>
733
+ <ci> Pcyt </ci>
734
+ </apply>
735
+ <ci> KeqPFP </ci>
736
+ </apply>
737
+ </apply>
738
+ <apply>
739
+ <times/>
740
+ <ci> F6Pcyt </ci>
741
+ <ci> PPcyt </ci>
742
+ </apply>
743
+ </apply>
744
+ </apply>
745
+ <apply>
746
+ <times/>
747
+ <ci> compartment </ci>
748
+ <ci> KmF6PPFP </ci>
749
+ <ci> KmPPPFP </ci>
750
+ <apply>
751
+ <plus/>
752
+ <cn type="integer"> 1 </cn>
753
+ <apply>
754
+ <divide/>
755
+ <ci> F16BPcyt </ci>
756
+ <ci> KmF16BPPFP </ci>
757
+ </apply>
758
+ <apply>
759
+ <divide/>
760
+ <ci> F6Pcyt </ci>
761
+ <ci> KmF6PPFP </ci>
762
+ </apply>
763
+ <apply>
764
+ <divide/>
765
+ <ci> Pcyt </ci>
766
+ <ci> KmPPFP </ci>
767
+ </apply>
768
+ <apply>
769
+ <divide/>
770
+ <ci> PPcyt </ci>
771
+ <ci> KmPPPFP </ci>
772
+ </apply>
773
+ </apply>
774
+ </apply>
775
+ </apply>
776
+ </math>
777
+ </kineticLaw>
778
+ </reaction>
779
+ <reaction id="v13" name="v13">
780
+ <listOfReactants>
781
+ <speciesReference species="F16BPcyt" stoichiometry="1"/>
782
+ </listOfReactants>
783
+ <listOfProducts>
784
+ <speciesReference species="DHAPcyt" stoichiometry="1"/>
785
+ <speciesReference species="GAPcyt" stoichiometry="1"/>
786
+ </listOfProducts>
787
+ <kineticLaw>
788
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
789
+ <apply>
790
+ <divide/>
791
+ <apply>
792
+ <times/>
793
+ <ci> Vmaxald </ci>
794
+ <ci> F16BPcyt </ci>
795
+ <apply>
796
+ <minus/>
797
+ <cn type="integer"> 1 </cn>
798
+ <apply>
799
+ <divide/>
800
+ <apply>
801
+ <times/>
802
+ <ci> DHAPcyt </ci>
803
+ <ci> GAPcyt </ci>
804
+ </apply>
805
+ <apply>
806
+ <times/>
807
+ <ci> Keqald </ci>
808
+ <ci> F16BPcyt </ci>
809
+ </apply>
810
+ </apply>
811
+ </apply>
812
+ </apply>
813
+ <apply>
814
+ <times/>
815
+ <ci> compartment </ci>
816
+ <ci> KmF16BPald </ci>
817
+ <apply>
818
+ <plus/>
819
+ <cn type="integer"> 1 </cn>
820
+ <apply>
821
+ <divide/>
822
+ <ci> DHAPcyt </ci>
823
+ <ci> KmDHAPald </ci>
824
+ </apply>
825
+ <apply>
826
+ <divide/>
827
+ <ci> F16BPcyt </ci>
828
+ <ci> KmF16BPald </ci>
829
+ </apply>
830
+ <apply>
831
+ <divide/>
832
+ <ci> GAPcyt </ci>
833
+ <ci> KmGAPald </ci>
834
+ </apply>
835
+ <apply>
836
+ <divide/>
837
+ <apply>
838
+ <times/>
839
+ <ci> DHAPcyt </ci>
840
+ <ci> GAPcyt </ci>
841
+ </apply>
842
+ <apply>
843
+ <times/>
844
+ <ci> KmDHAPald </ci>
845
+ <ci> KmGAPald </ci>
846
+ </apply>
847
+ </apply>
848
+ <apply>
849
+ <divide/>
850
+ <apply>
851
+ <times/>
852
+ <ci> F16BPcyt </ci>
853
+ <ci> GAPcyt </ci>
854
+ </apply>
855
+ <apply>
856
+ <times/>
857
+ <ci> KiGAPald </ci>
858
+ <ci> KmF16BPald </ci>
859
+ </apply>
860
+ </apply>
861
+ </apply>
862
+ </apply>
863
+ </apply>
864
+ </math>
865
+ </kineticLaw>
866
+ </reaction>
867
+ <reaction id="v14" name="v14">
868
+ <listOfReactants>
869
+ <speciesReference species="DHAPcyt" stoichiometry="1"/>
870
+ </listOfReactants>
871
+ <listOfProducts>
872
+ <speciesReference species="GAPcyt" stoichiometry="1"/>
873
+ </listOfProducts>
874
+ <kineticLaw>
875
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
876
+ <apply>
877
+ <divide/>
878
+ <apply>
879
+ <times/>
880
+ <ci> VmaxTPI </ci>
881
+ <apply>
882
+ <minus/>
883
+ <ci> DHAPcyt </ci>
884
+ <apply>
885
+ <divide/>
886
+ <ci> GAPcyt </ci>
887
+ <ci> KeqTPI </ci>
888
+ </apply>
889
+ </apply>
890
+ </apply>
891
+ <apply>
892
+ <times/>
893
+ <ci> compartment </ci>
894
+ <apply>
895
+ <plus/>
896
+ <ci> KmDHAPTPI </ci>
897
+ <ci> DHAPcyt </ci>
898
+ <ci> GAPcyt </ci>
899
+ </apply>
900
+ </apply>
901
+ </apply>
902
+ </math>
903
+ </kineticLaw>
904
+ </reaction>
905
+ <reaction id="v15" name="v15">
906
+ <listOfReactants>
907
+ <speciesReference species="ADPcyt" stoichiometry="17"/>
908
+ <speciesReference species="Pcyt" stoichiometry="17"/>
909
+ <speciesReference species="GAPcyt" stoichiometry="6"/>
910
+ </listOfReactants>
911
+ <listOfProducts>
912
+ <speciesReference species="ATPcyt" stoichiometry="17"/>
913
+ <speciesReference species="PGA3cyt" stoichiometry="6"/>
914
+ </listOfProducts>
915
+ <kineticLaw>
916
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
917
+ <apply>
918
+ <divide/>
919
+ <apply>
920
+ <times/>
921
+ <ci> VmaxGAPDH </ci>
922
+ <apply>
923
+ <minus/>
924
+ <cn type="integer"> 1 </cn>
925
+ <apply>
926
+ <divide/>
927
+ <apply>
928
+ <times/>
929
+ <ci> ATPcyt </ci>
930
+ <ci> PGA3cyt </ci>
931
+ </apply>
932
+ <apply>
933
+ <times/>
934
+ <ci> KeqGAPDH </ci>
935
+ <ci> ADPcyt </ci>
936
+ <ci> GAPcyt </ci>
937
+ <ci> Pcyt </ci>
938
+ </apply>
939
+ </apply>
940
+ </apply>
941
+ </apply>
942
+ <apply>
943
+ <times/>
944
+ <cn type="integer"> 6 </cn>
945
+ <ci> compartment </ci>
946
+ </apply>
947
+ </apply>
948
+ </math>
949
+ </kineticLaw>
950
+ </reaction>
951
+ <reaction id="v16" name="v16">
952
+ <listOfReactants>
953
+ <speciesReference species="G6Pam" stoichiometry="1"/>
954
+ <speciesReference species="PGA3cyt" stoichiometry="1"/>
955
+ </listOfReactants>
956
+ <listOfProducts>
957
+ <speciesReference species="G6Pcyt" stoichiometry="1"/>
958
+ <speciesReference species="PGA3am" stoichiometry="1"/>
959
+ </listOfProducts>
960
+ <kineticLaw>
961
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
962
+ <apply>
963
+ <divide/>
964
+ <apply>
965
+ <times/>
966
+ <ci> VPGA3imp </ci>
967
+ <apply>
968
+ <plus/>
969
+ <apply>
970
+ <minus/>
971
+ <apply>
972
+ <times/>
973
+ <ci> kbackwardPGA3imp </ci>
974
+ <ci> G6Pcyt </ci>
975
+ <ci> PGA3am </ci>
976
+ </apply>
977
+ </apply>
978
+ <apply>
979
+ <times/>
980
+ <ci> kforwardPGA3imp </ci>
981
+ <ci> G6Pam </ci>
982
+ <ci> PGA3cyt </ci>
983
+ </apply>
984
+ </apply>
985
+ </apply>
986
+ <ci> compartment </ci>
987
+ </apply>
988
+ </math>
989
+ </kineticLaw>
990
+ </reaction>
991
+ <reaction id="v17" name="v17">
992
+ <listOfReactants>
993
+ <speciesReference species="PGA3cyt" stoichiometry="1"/>
994
+ </listOfReactants>
995
+ <listOfProducts>
996
+ <speciesReference species="PGA2cyt" stoichiometry="1"/>
997
+ </listOfProducts>
998
+ <kineticLaw>
999
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1000
+ <apply>
1001
+ <divide/>
1002
+ <apply>
1003
+ <times/>
1004
+ <ci> VmaxPGlyM </ci>
1005
+ <apply>
1006
+ <plus/>
1007
+ <apply>
1008
+ <minus/>
1009
+ <apply>
1010
+ <divide/>
1011
+ <ci> PGA2cyt </ci>
1012
+ <ci> KeqPGlyM </ci>
1013
+ </apply>
1014
+ </apply>
1015
+ <ci> PGA3cyt </ci>
1016
+ </apply>
1017
+ </apply>
1018
+ <apply>
1019
+ <times/>
1020
+ <ci> compartment </ci>
1021
+ <apply>
1022
+ <plus/>
1023
+ <ci> KmPGA3PGlyM </ci>
1024
+ <apply>
1025
+ <divide/>
1026
+ <apply>
1027
+ <times/>
1028
+ <ci> KmPGA3PGlyM </ci>
1029
+ <ci> PGA2cyt </ci>
1030
+ </apply>
1031
+ <ci> KmPGA2PGlyM </ci>
1032
+ </apply>
1033
+ <ci> PGA3cyt </ci>
1034
+ </apply>
1035
+ </apply>
1036
+ </apply>
1037
+ </math>
1038
+ </kineticLaw>
1039
+ </reaction>
1040
+ <reaction id="v18" name="v18">
1041
+ <listOfReactants>
1042
+ <speciesReference species="PGA2cyt" stoichiometry="1"/>
1043
+ </listOfReactants>
1044
+ <listOfProducts>
1045
+ <speciesReference species="PEPcyt" stoichiometry="1"/>
1046
+ </listOfProducts>
1047
+ <kineticLaw>
1048
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1049
+ <apply>
1050
+ <divide/>
1051
+ <apply>
1052
+ <times/>
1053
+ <ci> Vmaxeno </ci>
1054
+ <apply>
1055
+ <plus/>
1056
+ <apply>
1057
+ <minus/>
1058
+ <apply>
1059
+ <divide/>
1060
+ <ci> PEPcyt </ci>
1061
+ <ci> Keqeno </ci>
1062
+ </apply>
1063
+ </apply>
1064
+ <ci> PGA2cyt </ci>
1065
+ </apply>
1066
+ </apply>
1067
+ <apply>
1068
+ <times/>
1069
+ <ci> compartment </ci>
1070
+ <apply>
1071
+ <plus/>
1072
+ <ci> KmPGA2eno </ci>
1073
+ <apply>
1074
+ <divide/>
1075
+ <apply>
1076
+ <times/>
1077
+ <ci> KmPGA2eno </ci>
1078
+ <ci> PEPcyt </ci>
1079
+ </apply>
1080
+ <ci> KmPEPeno </ci>
1081
+ </apply>
1082
+ <ci> PGA2cyt </ci>
1083
+ </apply>
1084
+ </apply>
1085
+ </apply>
1086
+ </math>
1087
+ </kineticLaw>
1088
+ </reaction>
1089
+ <reaction id="v19" name="v19">
1090
+ <listOfReactants>
1091
+ <speciesReference species="ADPcyt" stoichiometry="1"/>
1092
+ <speciesReference species="PEPcyt" stoichiometry="1"/>
1093
+ </listOfReactants>
1094
+ <listOfProducts>
1095
+ <speciesReference species="ATPcyt" stoichiometry="1"/>
1096
+ <speciesReference species="xpyruvate" stoichiometry="1"/>
1097
+ </listOfProducts>
1098
+ <kineticLaw>
1099
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1100
+ <apply>
1101
+ <divide/>
1102
+ <apply>
1103
+ <times/>
1104
+ <ci> VmaxPK </ci>
1105
+ <ci> ADPcyt </ci>
1106
+ <ci> PEPcyt </ci>
1107
+ </apply>
1108
+ <apply>
1109
+ <times/>
1110
+ <ci> compartment </ci>
1111
+ <ci> KmADPPK </ci>
1112
+ <ci> KmPEPPK </ci>
1113
+ <apply>
1114
+ <plus/>
1115
+ <cn type="integer"> 1 </cn>
1116
+ <apply>
1117
+ <divide/>
1118
+ <ci> ATPcyt </ci>
1119
+ <ci> KmATPPK </ci>
1120
+ </apply>
1121
+ <apply>
1122
+ <divide/>
1123
+ <apply>
1124
+ <times/>
1125
+ <ci> xpyruvate </ci>
1126
+ <ci> ATPcyt </ci>
1127
+ </apply>
1128
+ <apply>
1129
+ <times/>
1130
+ <ci> KmATPPK </ci>
1131
+ <ci> KmpyruvatePK </ci>
1132
+ </apply>
1133
+ </apply>
1134
+ <apply>
1135
+ <divide/>
1136
+ <ci> PEPcyt </ci>
1137
+ <ci> KmPEPPK </ci>
1138
+ </apply>
1139
+ <apply>
1140
+ <divide/>
1141
+ <apply>
1142
+ <times/>
1143
+ <ci> ADPcyt </ci>
1144
+ <ci> PEPcyt </ci>
1145
+ </apply>
1146
+ <apply>
1147
+ <times/>
1148
+ <ci> KmADPPK </ci>
1149
+ <ci> KmPEPPK </ci>
1150
+ </apply>
1151
+ </apply>
1152
+ </apply>
1153
+ </apply>
1154
+ </apply>
1155
+ </math>
1156
+ </kineticLaw>
1157
+ </reaction>
1158
+ <reaction id="v20" name="v20">
1159
+ <listOfReactants>
1160
+ <speciesReference species="G1Pcyt" stoichiometry="1"/>
1161
+ <speciesReference species="UTPcyt" stoichiometry="1"/>
1162
+ </listOfReactants>
1163
+ <listOfProducts>
1164
+ <speciesReference species="PPcyt" stoichiometry="1"/>
1165
+ <speciesReference species="UDPGcyt" stoichiometry="1"/>
1166
+ </listOfProducts>
1167
+ <kineticLaw>
1168
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1169
+ <apply>
1170
+ <divide/>
1171
+ <apply>
1172
+ <times/>
1173
+ <ci> VforwardUGPase </ci>
1174
+ <apply>
1175
+ <plus/>
1176
+ <apply>
1177
+ <minus/>
1178
+ <apply>
1179
+ <divide/>
1180
+ <apply>
1181
+ <times/>
1182
+ <ci> PPcyt </ci>
1183
+ <ci> UDPGcyt </ci>
1184
+ </apply>
1185
+ <ci> KeqUGPase </ci>
1186
+ </apply>
1187
+ </apply>
1188
+ <apply>
1189
+ <times/>
1190
+ <ci> G1Pcyt </ci>
1191
+ <ci> UTPcyt </ci>
1192
+ </apply>
1193
+ </apply>
1194
+ </apply>
1195
+ <apply>
1196
+ <times/>
1197
+ <ci> compartment </ci>
1198
+ <apply>
1199
+ <plus/>
1200
+ <ci> G1Pcyt </ci>
1201
+ <apply>
1202
+ <times/>
1203
+ <ci> KmG1PUGPase </ci>
1204
+ <apply>
1205
+ <plus/>
1206
+ <cn type="integer"> 1 </cn>
1207
+ <apply>
1208
+ <divide/>
1209
+ <ci> PPcyt </ci>
1210
+ <ci> KmPPUGPase </ci>
1211
+ </apply>
1212
+ </apply>
1213
+ </apply>
1214
+ </apply>
1215
+ <apply>
1216
+ <plus/>
1217
+ <apply>
1218
+ <times/>
1219
+ <ci> KmUTPUGPase </ci>
1220
+ <apply>
1221
+ <plus/>
1222
+ <cn type="integer"> 1 </cn>
1223
+ <apply>
1224
+ <divide/>
1225
+ <ci> UDPGcyt </ci>
1226
+ <ci> KmUDPGUGPase </ci>
1227
+ </apply>
1228
+ </apply>
1229
+ </apply>
1230
+ <ci> UTPcyt </ci>
1231
+ </apply>
1232
+ </apply>
1233
+ </apply>
1234
+ </math>
1235
+ </kineticLaw>
1236
+ </reaction>
1237
+ <reaction id="v21" name="v21">
1238
+ <listOfReactants>
1239
+ <speciesReference species="F6Pcyt" stoichiometry="1"/>
1240
+ <speciesReference species="UDPGcyt" stoichiometry="1"/>
1241
+ </listOfReactants>
1242
+ <listOfProducts>
1243
+ <speciesReference species="Pcyt" stoichiometry="1"/>
1244
+ <speciesReference species="Sucrose" stoichiometry="1"/>
1245
+ <speciesReference species="UDPcyt" stoichiometry="1"/>
1246
+ </listOfProducts>
1247
+ <kineticLaw>
1248
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1249
+ <apply>
1250
+ <divide/>
1251
+ <apply>
1252
+ <times/>
1253
+ <ci> VappSPSSPP </ci>
1254
+ <apply>
1255
+ <plus/>
1256
+ <apply>
1257
+ <minus/>
1258
+ <apply>
1259
+ <divide/>
1260
+ <apply>
1261
+ <times/>
1262
+ <ci> Pcyt </ci>
1263
+ <ci> UDPcyt </ci>
1264
+ </apply>
1265
+ <ci> KeqSPSSPP </ci>
1266
+ </apply>
1267
+ </apply>
1268
+ <apply>
1269
+ <times/>
1270
+ <ci> F6Pcyt </ci>
1271
+ <ci> UDPGcyt </ci>
1272
+ </apply>
1273
+ </apply>
1274
+ </apply>
1275
+ <apply>
1276
+ <times/>
1277
+ <ci> compartment </ci>
1278
+ <apply>
1279
+ <plus/>
1280
+ <apply>
1281
+ <times/>
1282
+ <ci> KmF6PSPSSPP </ci>
1283
+ <ci> KmUDPGSPSSPP </ci>
1284
+ </apply>
1285
+ <apply>
1286
+ <divide/>
1287
+ <apply>
1288
+ <times/>
1289
+ <ci> KmF6PSPSSPP </ci>
1290
+ <ci> KmUDPGSPSSPP </ci>
1291
+ <ci> Sucrose </ci>
1292
+ </apply>
1293
+ <ci> KiSucroseSPSSPP </ci>
1294
+ </apply>
1295
+ <apply>
1296
+ <divide/>
1297
+ <apply>
1298
+ <times/>
1299
+ <ci> VratioSPSSPP </ci>
1300
+ <ci> Pcyt </ci>
1301
+ <ci> UDPcyt </ci>
1302
+ </apply>
1303
+ <ci> KeqSPSSPP </ci>
1304
+ </apply>
1305
+ <apply>
1306
+ <times/>
1307
+ <ci> F6Pcyt </ci>
1308
+ <ci> UDPGcyt </ci>
1309
+ </apply>
1310
+ </apply>
1311
+ </apply>
1312
+ </apply>
1313
+ </math>
1314
+ </kineticLaw>
1315
+ </reaction>
1316
+ <reaction id="v22" name="v22">
1317
+ <listOfReactants>
1318
+ <speciesReference species="Fructose" stoichiometry="1"/>
1319
+ <speciesReference species="UDPGcyt" stoichiometry="1"/>
1320
+ </listOfReactants>
1321
+ <listOfProducts>
1322
+ <speciesReference species="Sucrose" stoichiometry="1"/>
1323
+ <speciesReference species="UDPcyt" stoichiometry="1"/>
1324
+ </listOfProducts>
1325
+ <listOfModifiers>
1326
+ <modifierSpeciesReference species="Glucosecyt"/>
1327
+ </listOfModifiers>
1328
+ <kineticLaw>
1329
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1330
+ <apply>
1331
+ <divide/>
1332
+ <apply>
1333
+ <times/>
1334
+ <ci> VmaxSSynth </ci>
1335
+ <ci> Fructose </ci>
1336
+ <apply>
1337
+ <minus/>
1338
+ <cn type="integer"> 1 </cn>
1339
+ <apply>
1340
+ <divide/>
1341
+ <apply>
1342
+ <times/>
1343
+ <ci> Sucrose </ci>
1344
+ <ci> UDPcyt </ci>
1345
+ </apply>
1346
+ <apply>
1347
+ <times/>
1348
+ <ci> KeqSSynth </ci>
1349
+ <ci> Fructose </ci>
1350
+ <ci> UDPGcyt </ci>
1351
+ </apply>
1352
+ </apply>
1353
+ </apply>
1354
+ <ci> UDPGcyt </ci>
1355
+ </apply>
1356
+ <apply>
1357
+ <times/>
1358
+ <ci> compartment </ci>
1359
+ <ci> KmSSynthFructose </ci>
1360
+ <ci> KmSSynthUDPG </ci>
1361
+ <apply>
1362
+ <plus/>
1363
+ <cn type="integer"> 1 </cn>
1364
+ <apply>
1365
+ <divide/>
1366
+ <ci> Glucosecyt </ci>
1367
+ <ci> KiSSynthGlucose </ci>
1368
+ </apply>
1369
+ </apply>
1370
+ <apply>
1371
+ <plus/>
1372
+ <cn type="integer"> 1 </cn>
1373
+ <apply>
1374
+ <divide/>
1375
+ <apply>
1376
+ <times/>
1377
+ <ci> Sucrose </ci>
1378
+ <ci> UDPcyt </ci>
1379
+ </apply>
1380
+ <apply>
1381
+ <times/>
1382
+ <ci> KmSSynthSucrose </ci>
1383
+ <ci> KmSSynthUDP </ci>
1384
+ </apply>
1385
+ </apply>
1386
+ <apply>
1387
+ <divide/>
1388
+ <apply>
1389
+ <times/>
1390
+ <ci> Fructose </ci>
1391
+ <ci> UDPGcyt </ci>
1392
+ </apply>
1393
+ <apply>
1394
+ <times/>
1395
+ <ci> KmSSynthFructose </ci>
1396
+ <ci> KmSSynthUDPG </ci>
1397
+ </apply>
1398
+ </apply>
1399
+ </apply>
1400
+ </apply>
1401
+ </apply>
1402
+ </math>
1403
+ </kineticLaw>
1404
+ </reaction>
1405
+ <reaction id="v23" name="v23">
1406
+ <listOfReactants>
1407
+ <speciesReference species="xsucrose" stoichiometry="1"/>
1408
+ </listOfReactants>
1409
+ <listOfProducts>
1410
+ <speciesReference species="Sucrose" stoichiometry="1"/>
1411
+ </listOfProducts>
1412
+ <kineticLaw>
1413
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1414
+ <apply>
1415
+ <divide/>
1416
+ <apply>
1417
+ <times/>
1418
+ <ci> VSucUpt </ci>
1419
+ <apply>
1420
+ <minus/>
1421
+ <apply>
1422
+ <times/>
1423
+ <ci> kforwardSucUpt </ci>
1424
+ <ci> xsucrose </ci>
1425
+ </apply>
1426
+ <apply>
1427
+ <times/>
1428
+ <ci> kbackwardSucUpt </ci>
1429
+ <ci> Sucrose </ci>
1430
+ </apply>
1431
+ </apply>
1432
+ </apply>
1433
+ <ci> compartment </ci>
1434
+ </apply>
1435
+ </math>
1436
+ </kineticLaw>
1437
+ </reaction>
1438
+ <reaction id="v24" name="v24">
1439
+ <listOfReactants>
1440
+ <speciesReference species="Sucrose" stoichiometry="1"/>
1441
+ </listOfReactants>
1442
+ <listOfProducts>
1443
+ <speciesReference species="Fructose" stoichiometry="1"/>
1444
+ <speciesReference species="Glucosecyt" stoichiometry="1"/>
1445
+ </listOfProducts>
1446
+ <kineticLaw>
1447
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1448
+ <apply>
1449
+ <divide/>
1450
+ <apply>
1451
+ <times/>
1452
+ <ci> Vmaxinv </ci>
1453
+ <ci> Sucrose </ci>
1454
+ </apply>
1455
+ <apply>
1456
+ <times/>
1457
+ <ci> compartment </ci>
1458
+ <ci> KmSucroseinv </ci>
1459
+ <apply>
1460
+ <plus/>
1461
+ <cn type="integer"> 1 </cn>
1462
+ <apply>
1463
+ <divide/>
1464
+ <ci> Glucosecyt </ci>
1465
+ <ci> KiGlucoseinv </ci>
1466
+ </apply>
1467
+ </apply>
1468
+ <apply>
1469
+ <plus/>
1470
+ <cn type="integer"> 1 </cn>
1471
+ <apply>
1472
+ <divide/>
1473
+ <ci> Fructose </ci>
1474
+ <ci> KiFructoseinv </ci>
1475
+ </apply>
1476
+ <apply>
1477
+ <divide/>
1478
+ <ci> Sucrose </ci>
1479
+ <ci> KmSucroseinv </ci>
1480
+ </apply>
1481
+ </apply>
1482
+ </apply>
1483
+ </apply>
1484
+ </math>
1485
+ </kineticLaw>
1486
+ </reaction>
1487
+ <reaction id="v25" name="v25">
1488
+ <listOfReactants>
1489
+ <speciesReference species="ATPcyt" stoichiometry="1"/>
1490
+ <speciesReference species="Fructose" stoichiometry="1"/>
1491
+ </listOfReactants>
1492
+ <listOfProducts>
1493
+ <speciesReference species="ADPcyt" stoichiometry="1"/>
1494
+ <speciesReference species="F6Pcyt" stoichiometry="1"/>
1495
+ </listOfProducts>
1496
+ <kineticLaw>
1497
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1498
+ <apply>
1499
+ <divide/>
1500
+ <apply>
1501
+ <times/>
1502
+ <ci> VmaxFK </ci>
1503
+ <ci> ATPcyt </ci>
1504
+ <ci> Fructose </ci>
1505
+ </apply>
1506
+ <apply>
1507
+ <times/>
1508
+ <ci> compartment </ci>
1509
+ <ci> KmATPFK </ci>
1510
+ <ci> KmFructoseFK </ci>
1511
+ <apply>
1512
+ <plus/>
1513
+ <cn type="integer"> 1 </cn>
1514
+ <apply>
1515
+ <divide/>
1516
+ <ci> F6Pcyt </ci>
1517
+ <ci> KmF6PFK </ci>
1518
+ </apply>
1519
+ </apply>
1520
+ <apply>
1521
+ <plus/>
1522
+ <cn type="integer"> 1 </cn>
1523
+ <apply>
1524
+ <divide/>
1525
+ <ci> Fructose </ci>
1526
+ <ci> KiFructoseFK </ci>
1527
+ </apply>
1528
+ </apply>
1529
+ <apply>
1530
+ <plus/>
1531
+ <cn type="integer"> 1 </cn>
1532
+ <apply>
1533
+ <divide/>
1534
+ <ci> ADPcyt </ci>
1535
+ <ci> KmADPFK </ci>
1536
+ </apply>
1537
+ <apply>
1538
+ <divide/>
1539
+ <ci> ATPcyt </ci>
1540
+ <ci> KmATPFK </ci>
1541
+ </apply>
1542
+ <apply>
1543
+ <divide/>
1544
+ <ci> Fructose </ci>
1545
+ <ci> KiFructoseFK </ci>
1546
+ </apply>
1547
+ </apply>
1548
+ <apply>
1549
+ <plus/>
1550
+ <cn type="integer"> 1 </cn>
1551
+ <apply>
1552
+ <divide/>
1553
+ <ci> Fructose </ci>
1554
+ <ci> KmFructoseFK </ci>
1555
+ </apply>
1556
+ </apply>
1557
+ </apply>
1558
+ </apply>
1559
+ </math>
1560
+ </kineticLaw>
1561
+ </reaction>
1562
+ <reaction id="v26" name="v26">
1563
+ <listOfReactants>
1564
+ <speciesReference species="ATPcyt" stoichiometry="1"/>
1565
+ <speciesReference species="Glucosecyt" stoichiometry="1"/>
1566
+ </listOfReactants>
1567
+ <listOfProducts>
1568
+ <speciesReference species="ADPcyt" stoichiometry="1"/>
1569
+ <speciesReference species="G6Pcyt" stoichiometry="1"/>
1570
+ </listOfProducts>
1571
+ <listOfModifiers>
1572
+ <modifierSpeciesReference species="Fructose"/>
1573
+ </listOfModifiers>
1574
+ <kineticLaw>
1575
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1576
+ <apply>
1577
+ <divide/>
1578
+ <apply>
1579
+ <plus/>
1580
+ <apply>
1581
+ <divide/>
1582
+ <apply>
1583
+ <times/>
1584
+ <ci> VmaxGK </ci>
1585
+ <ci> ATPcyt </ci>
1586
+ <ci> Glucosecyt </ci>
1587
+ </apply>
1588
+ <apply>
1589
+ <times/>
1590
+ <cn type="integer"> 2 </cn>
1591
+ <ci> KmATPHK1 </ci>
1592
+ <ci> KmGlucoseHK1 </ci>
1593
+ <apply>
1594
+ <plus/>
1595
+ <cn type="integer"> 1 </cn>
1596
+ <apply>
1597
+ <divide/>
1598
+ <ci> ADPcyt </ci>
1599
+ <ci> KiADPHK1 </ci>
1600
+ </apply>
1601
+ <apply>
1602
+ <divide/>
1603
+ <ci> ATPcyt </ci>
1604
+ <ci> KmATPHK1 </ci>
1605
+ </apply>
1606
+ </apply>
1607
+ <apply>
1608
+ <plus/>
1609
+ <cn type="integer"> 1 </cn>
1610
+ <apply>
1611
+ <divide/>
1612
+ <ci> G6Pcyt </ci>
1613
+ <ci> KiG6PHK1 </ci>
1614
+ </apply>
1615
+ </apply>
1616
+ <apply>
1617
+ <plus/>
1618
+ <cn type="integer"> 1 </cn>
1619
+ <apply>
1620
+ <divide/>
1621
+ <ci> Fructose </ci>
1622
+ <ci> KmFructoseHK1 </ci>
1623
+ </apply>
1624
+ <apply>
1625
+ <divide/>
1626
+ <ci> Glucosecyt </ci>
1627
+ <ci> KmGlucoseHK1 </ci>
1628
+ </apply>
1629
+ </apply>
1630
+ </apply>
1631
+ </apply>
1632
+ <apply>
1633
+ <divide/>
1634
+ <apply>
1635
+ <times/>
1636
+ <ci> VmaxGK </ci>
1637
+ <ci> ATPcyt </ci>
1638
+ <ci> Glucosecyt </ci>
1639
+ </apply>
1640
+ <apply>
1641
+ <times/>
1642
+ <cn type="integer"> 2 </cn>
1643
+ <ci> KmATPHK2 </ci>
1644
+ <ci> KmGlucoseHK2 </ci>
1645
+ <apply>
1646
+ <plus/>
1647
+ <cn type="integer"> 1 </cn>
1648
+ <apply>
1649
+ <divide/>
1650
+ <ci> ADPcyt </ci>
1651
+ <ci> KiADPHK2 </ci>
1652
+ </apply>
1653
+ <apply>
1654
+ <divide/>
1655
+ <ci> ATPcyt </ci>
1656
+ <ci> KmATPHK2 </ci>
1657
+ </apply>
1658
+ </apply>
1659
+ <apply>
1660
+ <plus/>
1661
+ <cn type="integer"> 1 </cn>
1662
+ <apply>
1663
+ <divide/>
1664
+ <ci> Fructose </ci>
1665
+ <ci> KmFructoseHK2 </ci>
1666
+ </apply>
1667
+ <apply>
1668
+ <divide/>
1669
+ <ci> Glucosecyt </ci>
1670
+ <ci> KmGlucoseHK2 </ci>
1671
+ </apply>
1672
+ </apply>
1673
+ </apply>
1674
+ </apply>
1675
+ </apply>
1676
+ <ci> compartment </ci>
1677
+ </apply>
1678
+ </math>
1679
+ </kineticLaw>
1680
+ </reaction>
1681
+ <reaction id="v27" name="v27">
1682
+ <listOfReactants>
1683
+ <speciesReference species="ATPcyt" stoichiometry="1"/>
1684
+ <speciesReference species="UDPcyt" stoichiometry="1"/>
1685
+ </listOfReactants>
1686
+ <listOfProducts>
1687
+ <speciesReference species="ADPcyt" stoichiometry="1"/>
1688
+ <speciesReference species="UTPcyt" stoichiometry="1"/>
1689
+ </listOfProducts>
1690
+ <kineticLaw>
1691
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1692
+ <apply>
1693
+ <divide/>
1694
+ <apply>
1695
+ <times/>
1696
+ <ci> VNDPK </ci>
1697
+ <apply>
1698
+ <minus/>
1699
+ <apply>
1700
+ <times/>
1701
+ <ci> kforwardNDPK </ci>
1702
+ <ci> ATPcyt </ci>
1703
+ <ci> UDPcyt </ci>
1704
+ </apply>
1705
+ <apply>
1706
+ <times/>
1707
+ <ci> kbackwardNDPK </ci>
1708
+ <ci> ADPcyt </ci>
1709
+ <ci> UTPcyt </ci>
1710
+ </apply>
1711
+ </apply>
1712
+ </apply>
1713
+ <ci> compartment </ci>
1714
+ </apply>
1715
+ </math>
1716
+ </kineticLaw>
1717
+ </reaction>
1718
+ <reaction id="v28" name="v28">
1719
+ <listOfReactants>
1720
+ <speciesReference species="ADPam" stoichiometry="1"/>
1721
+ <speciesReference species="ATPcyt" stoichiometry="1"/>
1722
+ </listOfReactants>
1723
+ <listOfProducts>
1724
+ <speciesReference species="ADPcyt" stoichiometry="1"/>
1725
+ <speciesReference species="ATPam" stoichiometry="1"/>
1726
+ </listOfProducts>
1727
+ <kineticLaw>
1728
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1729
+ <apply>
1730
+ <divide/>
1731
+ <apply>
1732
+ <times/>
1733
+ <ci> VAT </ci>
1734
+ <apply>
1735
+ <plus/>
1736
+ <apply>
1737
+ <minus/>
1738
+ <apply>
1739
+ <times/>
1740
+ <ci> kbackwardAT </ci>
1741
+ <ci> ADPcyt </ci>
1742
+ <ci> ATPam </ci>
1743
+ </apply>
1744
+ </apply>
1745
+ <apply>
1746
+ <times/>
1747
+ <ci> kforwardAT </ci>
1748
+ <ci> ADPam </ci>
1749
+ <ci> ATPcyt </ci>
1750
+ </apply>
1751
+ </apply>
1752
+ </apply>
1753
+ <ci> compartment </ci>
1754
+ </apply>
1755
+ </math>
1756
+ </kineticLaw>
1757
+ </reaction>
1758
+ <reaction id="v29" name="v29">
1759
+ <listOfReactants>
1760
+ <speciesReference species="Pam" stoichiometry="1"/>
1761
+ </listOfReactants>
1762
+ <listOfProducts>
1763
+ <speciesReference species="Pcyt" stoichiometry="1"/>
1764
+ </listOfProducts>
1765
+ <kineticLaw>
1766
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1767
+ <apply>
1768
+ <divide/>
1769
+ <apply>
1770
+ <times/>
1771
+ <ci> VPexp </ci>
1772
+ <apply>
1773
+ <minus/>
1774
+ <apply>
1775
+ <times/>
1776
+ <ci> kforwardPexp </ci>
1777
+ <ci> Pam </ci>
1778
+ </apply>
1779
+ <apply>
1780
+ <times/>
1781
+ <ci> kbackwardPexp </ci>
1782
+ <ci> Pcyt </ci>
1783
+ </apply>
1784
+ </apply>
1785
+ </apply>
1786
+ <ci> compartment </ci>
1787
+ </apply>
1788
+ </math>
1789
+ </kineticLaw>
1790
+ </reaction>
1791
+ <reaction id="v30" name="v30">
1792
+ <listOfReactants>
1793
+ <speciesReference species="ATPcyt" stoichiometry="1"/>
1794
+ </listOfReactants>
1795
+ <listOfProducts>
1796
+ <speciesReference species="ADPcyt" stoichiometry="1"/>
1797
+ <speciesReference species="Pcyt" stoichiometry="1"/>
1798
+ </listOfProducts>
1799
+ <kineticLaw>
1800
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
1801
+ <apply>
1802
+ <divide/>
1803
+ <apply>
1804
+ <times/>
1805
+ <ci> kATPcons </ci>
1806
+ <ci> VATPcons </ci>
1807
+ <ci> ATPcyt </ci>
1808
+ </apply>
1809
+ <apply>
1810
+ <times/>
1811
+ <ci> compartment </ci>
1812
+ <ci> ADPcyt </ci>
1813
+ </apply>
1814
+ </apply>
1815
+ </math>
1816
+ </kineticLaw>
1817
+ </reaction>
1818
+ </listOfReactions>
1819
+ </model></sbml>