biointerchange 0.2.0 → 0.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/README.md +11 -1
- data/VERSION +1 -1
- data/generators/javaify.rb +1 -1
- data/generators/rdfxml.rb +3 -1
- data/lib/biointerchange/core.rb +14 -13
- data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +61 -9
- data/lib/biointerchange/genomics/gff3_reader.rb +5 -1
- data/lib/biointerchange/gff3o.rb +44 -28
- data/lib/biointerchange/gvf1o.rb +63 -31
- data/lib/biointerchange/so.rb +19627 -0
- data/spec/gff3_rdfwriter_spec.rb +1 -1
- data/spec/gvf_rdfwriter_spec.rb +1 -1
- data/supplemental/java/biointerchange/pom.xml +1 -1
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java +97 -63
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java +686 -102
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SO.java +24000 -0
- data/supplemental/python/biointerchange/gff3o.py +85 -57
- data/supplemental/python/biointerchange/gvf1o.py +565 -84
- data/supplemental/python/biointerchange/so.py +19625 -0
- data/supplemental/python/setup.py +2 -2
- metadata +6 -3
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@@ -2,9 +2,9 @@ from setuptools import setup, find_packages
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setup(
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name = "biointerchange",
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version = "0.1
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version = "0.2.1",
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author = "Joachim Baran, Geraint Duck",
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description = ( "Wrapper for easy access to GFF3O, GVF1O, SIO and SOFA.",
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description = ( "Wrapper for easy access to GFF3O, GVF1O, SIO, SO and SOFA.",
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"Part of the BioInterchange project." ),
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license = "MIT",
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url = "http://www.biointerchange.org",
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: biointerchange
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version: !ruby/object:Gem::Version
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version: 0.2.
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version: 0.2.1
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prerelease:
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platform: ruby
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authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2013-
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date: 2013-04-20 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rdf
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@@ -208,6 +208,7 @@ files:
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- lib/biointerchange/reader.rb
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- lib/biointerchange/registry.rb
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- lib/biointerchange/sio.rb
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- lib/biointerchange/so.rb
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- lib/biointerchange/sofa.rb
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- lib/biointerchange/textmining/content.rb
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- lib/biointerchange/textmining/content_connection.rb
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@@ -230,12 +231,14 @@ files:
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- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java
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- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java
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- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java
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- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SO.java
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- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java
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- supplemental/java/biointerchange/src/test/java/org/biointerchange/AppTest.java
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- supplemental/python/biointerchange/__init__.py
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- supplemental/python/biointerchange/gff3o.py
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- supplemental/python/biointerchange/gvf1o.py
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- supplemental/python/biointerchange/sio.py
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- supplemental/python/biointerchange/so.py
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- supplemental/python/biointerchange/sofa.py
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- supplemental/python/example.py
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- supplemental/python/setup.py
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@@ -273,7 +276,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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version: '0'
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segments:
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- 0
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hash:
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hash: -3573974347374072968
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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