biodiversity 3.5.1 → 4.0.0

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Files changed (40) hide show
  1. checksums.yaml +5 -5
  2. data/.gitignore +1 -0
  3. data/.rubocop.yml +9 -6
  4. data/.ruby-version +1 -1
  5. data/.travis.yml +1 -6
  6. data/CHANGELOG +3 -0
  7. data/Gemfile +2 -0
  8. data/README.md +37 -178
  9. data/Rakefile +15 -48
  10. data/biodiversity.gemspec +18 -21
  11. data/clib/linux/libgnparser.h +93 -0
  12. data/clib/linux/libgnparser.so +0 -0
  13. data/clib/mac/libgnparser.h +93 -0
  14. data/clib/mac/libgnparser.so +0 -0
  15. data/lib/biodiversity.rb +4 -9
  16. data/lib/biodiversity/parser.rb +65 -281
  17. data/lib/biodiversity/version.rb +8 -1
  18. data/spec/lib/biodiversity_spec.rb +9 -0
  19. data/spec/lib/parser_spec.rb +38 -0
  20. data/spec/spec_helper.rb +4 -81
  21. metadata +27 -102
  22. data/.byebug_history +0 -18
  23. data/.document +0 -5
  24. data/examples/socket_client.rb +0 -25
  25. data/lib/biodiversity/guid.rb +0 -1
  26. data/lib/biodiversity/guid/lsid.rb +0 -16
  27. data/lib/biodiversity/parser/scientific_name_canonical.rb +0 -528
  28. data/lib/biodiversity/parser/scientific_name_canonical.treetop +0 -120
  29. data/lib/biodiversity/parser/scientific_name_clean.rb +0 -8991
  30. data/lib/biodiversity/parser/scientific_name_clean.treetop +0 -1632
  31. data/lib/biodiversity/parser/scientific_name_dirty.rb +0 -1298
  32. data/lib/biodiversity/parser/scientific_name_dirty.treetop +0 -264
  33. data/spec/biodiversity_spec.rb +0 -11
  34. data/spec/files/test_data.txt +0 -490
  35. data/spec/files/todo.txt +0 -55
  36. data/spec/guid/lsid.spec.rb +0 -15
  37. data/spec/parser/scientific_name_canonical_spec.rb +0 -36
  38. data/spec/parser/scientific_name_clean_spec.rb +0 -1137
  39. data/spec/parser/scientific_name_dirty_spec.rb +0 -165
  40. data/spec/parser/scientific_name_spec.rb +0 -193

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