biodiversity 3.5.1 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (40) hide show
  1. checksums.yaml +5 -5
  2. data/.gitignore +1 -0
  3. data/.rubocop.yml +9 -6
  4. data/.ruby-version +1 -1
  5. data/.travis.yml +1 -6
  6. data/CHANGELOG +3 -0
  7. data/Gemfile +2 -0
  8. data/README.md +37 -178
  9. data/Rakefile +15 -48
  10. data/biodiversity.gemspec +18 -21
  11. data/clib/linux/libgnparser.h +93 -0
  12. data/clib/linux/libgnparser.so +0 -0
  13. data/clib/mac/libgnparser.h +93 -0
  14. data/clib/mac/libgnparser.so +0 -0
  15. data/lib/biodiversity.rb +4 -9
  16. data/lib/biodiversity/parser.rb +65 -281
  17. data/lib/biodiversity/version.rb +8 -1
  18. data/spec/lib/biodiversity_spec.rb +9 -0
  19. data/spec/lib/parser_spec.rb +38 -0
  20. data/spec/spec_helper.rb +4 -81
  21. metadata +27 -102
  22. data/.byebug_history +0 -18
  23. data/.document +0 -5
  24. data/examples/socket_client.rb +0 -25
  25. data/lib/biodiversity/guid.rb +0 -1
  26. data/lib/biodiversity/guid/lsid.rb +0 -16
  27. data/lib/biodiversity/parser/scientific_name_canonical.rb +0 -528
  28. data/lib/biodiversity/parser/scientific_name_canonical.treetop +0 -120
  29. data/lib/biodiversity/parser/scientific_name_clean.rb +0 -8991
  30. data/lib/biodiversity/parser/scientific_name_clean.treetop +0 -1632
  31. data/lib/biodiversity/parser/scientific_name_dirty.rb +0 -1298
  32. data/lib/biodiversity/parser/scientific_name_dirty.treetop +0 -264
  33. data/spec/biodiversity_spec.rb +0 -11
  34. data/spec/files/test_data.txt +0 -490
  35. data/spec/files/todo.txt +0 -55
  36. data/spec/guid/lsid.spec.rb +0 -15
  37. data/spec/parser/scientific_name_canonical_spec.rb +0 -36
  38. data/spec/parser/scientific_name_clean_spec.rb +0 -1137
  39. data/spec/parser/scientific_name_dirty_spec.rb +0 -165
  40. data/spec/parser/scientific_name_spec.rb +0 -193

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