bio 1.5.2 → 1.6.0.pre.20181210

data/lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb

@@ -1,29 +0,0 @@
-class BiorubyGenerator < Rails::Generator::Base
-  def manifest
-    record do |m|
-      m.directory 'app/controllers'
-      m.directory 'app/helpers'
-      m.directory 'app/views/bioruby'
-      m.directory 'app/views/layouts'
-      m.directory 'public/images/bioruby'
-      m.directory 'public/stylesheets'
-      m.file 'bioruby_controller.rb', 'app/controllers/bioruby_controller.rb'
-      m.file 'bioruby_helper.rb',     'app/helpers/bioruby_helper.rb'
-      m.file '_methods.rhtml',        'app/views/bioruby/_methods.rhtml'
-      m.file '_classes.rhtml',        'app/views/bioruby/_classes.rhtml'
-      m.file '_modules.rhtml',        'app/views/bioruby/_modules.rhtml'
-      m.file '_log.rhtml',            'app/views/bioruby/_log.rhtml'
-      m.file '_variables.rhtml',      'app/views/bioruby/_variables.rhtml'
-      m.file 'commands.rhtml',        'app/views/bioruby/commands.rhtml'
-      m.file 'history.rhtml',         'app/views/bioruby/history.rhtml'
-      m.file 'index.rhtml',           'app/views/bioruby/index.rhtml'
-      m.file 'bioruby.rhtml',         'app/views/layouts/bioruby.rhtml'
-      m.file 'spinner.gif',           'public/images/bioruby/spinner.gif'
-      m.file 'bioruby-gem.png',       'public/images/bioruby/gem.png'
-      m.file 'bioruby-link.gif',      'public/images/bioruby/link.gif'
-      m.file 'bioruby-bg.gif',        'public/images/bioruby/bg.gif'
-      m.file 'bioruby.css',           'public/stylesheets/bioruby.css'
-    end
-  end
-end
-

data/lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml

@@ -1,4 +0,0 @@
-[ <%= @class %> ]
-<div id="class_list">
-<%= @classes.map{ |x| reference_link(x) }.join(" > ") %>
-</div>

data/lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml

@@ -1,27 +0,0 @@
-<div id="log_<%= @number %>" class="log">
-<div class="input">
-Input: [<%= link_to_remote @number, :url => {:action => "reload_script", :number => @number} %>]
-<pre class="script">
-<%=h @script %>
-</pre>
-<div class="output">
-Result:
-[<%= link_to_remote "methods", :url => {:action => "list_methods", :number => @number} %>]
-[<%= link_to_remote "classes", :url => {:action => "list_classes", :number => @number} %>]
-[<%= link_to_remote "modules", :url => {:action => "list_modules", :number => @number} %>]
-<div id="methods_<%= @number %>" class="methods"></div>
-<div id="classes_<%= @number %>" class="classes"></div>
-<div id="modules_<%= @number %>" class="modules"></div>
-<pre class="result">
-<%=h @result %>
-</pre>
-<% if @output %>
-Output:
-<pre class="output">
-<%=h @output %>
-</pre>
-<% end %>
-</div>
-</div>
-</div>
-

data/lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml

@@ -1,11 +0,0 @@
-[ <%= @class %> ]
-<div id="method_list">
-<table>
-<tr>
-<%- step = @methods.size / 4 + 1 -%>
-<%- 0.step(@methods.size, step) do |i| -%>
-<td><%= @methods[i, step].join("<br>") %></td>
-<%- end -%>
-</tr>
-</table>
-</div>

data/lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml

@@ -1,4 +0,0 @@
-[ <%= @class %> ]
-<div id="module_list">
-<%= @modules.map {|x| reference_link(x) }.sort.join("<br>") %>
-</div>

data/lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml

@@ -1,7 +0,0 @@
-<div id="variables">
-<ul>
-<% local_variables.each do |var| %>
-<li><%= link_to_remote var, :update => "index", :url => {:action => "evaluate", :script => var} %></li>
-<% end %>
-</ul>
-</div>

data/lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css

@@ -1,368 +0,0 @@
-/* body */
-
-body {
-	margin: 0;
-	color: #555555;
-	background: url("/images/bioruby/bg.gif") repeat-y center;
-	font-family: "trebuchet ms", verdana, arial, helvetica, sans-serif;
-	font-size: 12px;
-}
-
-div#content {
-	width: 750px;
-	height: auto;
-	margin: 0 auto 0 auto;
-	text-align: left;
-}
-
-/* title */
-
-div#title {
-	width: 550px;
-	padding-right: 200px;
-	margin-bottom: 20px;
-	text-align: left;
-	background: url("/images/bioruby/gem.png") no-repeat left bottom;
-}
-
-div#title .titletop {
-	color: #736451;
-	font-size: 30px;
-	font-weight: normal;
-	text-align: left;
-	text-indent: 70px;
-	margin: 0;
-	padding: 0;
-	padding-top: 20px;
-	margin-bottom: 10px;
-}
-
-div#title .titlesub {
-	color: #000000;
-	font-size: 15px;
-	font-weight: normal;
-	text-align: left;
-	text-indent: 70px;
-	margin: 0;
-	padding: 0;
-	border-bottom: 1px solid #eeeeee;
-}
-
-/* main */
-
-div#main {
-	width: 550px;
-	background-color: #ffffff;
-	padding-top: 0px;
-	padding-left: 10px;
-}
-
-div#notice {
-	background-color: #fcc;
-	border: 1px solid #f00;
-}
-
-div#notice p {
-	margin: 0;
-	padding: 10px;
-}
-
-pre {
-	color: #6e8377;
-	background-color: #eaedeb;
-	border-color: #6e8377;
-	border-style: dashed;
-	border-width: 1px;
-	padding: 5px;
-	width: 500px;
-	overflow: auto;
-}
-
-div.log {
-	width: 500px;
-	margin-top: 15px;
-	padding-top: 5px;
-	border-top: 1px dotted #333333;
-}
-
-div.log div.input pre.script {
-	background-color: #ffffeb;
-	border-style: solid;
-}
-
-div.log div.output div.methods {
-	padding: 5px;
-	background-color: #ffffdd;
-	border: 1px solid #ffcc00;
-}
-
-div.log div.output div.classes {
-	padding: 5px;
-	background-color: #ccffcc;
-	border: 1px solid #00ff00;
-}
-
-div.log div.output div.modules {
-	padding: 5px;
-	background-color: #ffcccc;
-	border: 1px solid #ff0000;
-}
-
-div.log div.output pre.result {
-	border-style: dashed;
-}
-
-div.log div.output pre.output {
-	border-style: dashed;
-}
-
-div.log hr.log {
-	border-style: dotted none none none;
-	border-top-width: 1px;
-	border-color: #6e8377;
-	width: 200px;
-	height: 1px;
-}
-
-/* side */
-
-div#side {
-	width: 150px;
-	float: right;
-	margin-top: 20px;
-	text-align: left;
-	font-size: 12px;
-	color: #e44268;
-}
-
-div#side div.title {
-	font-weight: normal;
-	color: #e44268;
-	text-align: left;
-	border-width: 0px 0px 1px 0px;
-	border-bottom: 1px solid #e44268;
-}
-
-div#side a:link {
-	color: #ffffff;
-	text-decoration: none;
-}
-
-div#side a:visited {
-	color: #ffffff;
-	text-decoration: none;
-}
-
-div#side a:hover {
-	color: #cccccc;
-	text-decoration: underline;
-}
-
-div#side ol,ul {
-	margin: 10px;
-	padding-left: 10px;
-}
-
-div#side li {
-	color: #e44268;
-}
-
-div#side img {
-	padding: 5px;
-	/* centering */
-	display: block;
-	margin-left: auto;
-	margin-right: auto;
-	border: 0px;
-}
-
-/* history */
-
-div#history {
-	width: 500px;
-}
-
-div#history div.histtime {
-	background-color: #eaedeb;
-	padding: 5px;
-}
-
-div#history div.histline {
-	background-color: #ffffeb;
-	padding: 5px;
-	font-family: monospace;
-	white-space: pre;
-}
-
-/* command */
-
-div#command {
-	width: 500px;
-}
-
-/* image */
-
-img {
-}
-
-/* em */
-
-em {
-	color: #6e8377;
-	font-style: normal;
-}
-
-/* link */
-
-a {
-	text-decoration: none;
-}
-
-a:link {
-	color: #669933;
-}
-
-a:visited {
-	color: #669933;
-}
-
-a:hover {
-	text-decoration: underline;
-}
-
-/* header */
-
-h1 {
-	font-size: 180%;
-	color: #ffffff;
-	background-color: #6e8377;
-	line-height: 64px;
-	text-align: left;
-	padding-left: 20px;
-}
-
-h2 {
-	font-size: 160%;
-	color: #6e8377;
-	border-color: #b9c3be;
-	border-style: dashed;
-	border-width: 0px 0px 1px 0px;
-}
-
-h3 {
-	font-size: 140%;
-	color: #6e8377;
-	border-color: #b9c3be;
-	border-style: dotted;
-	border-width: 0px 0px 1px 0px;
-}
-
-h4 {
-	font-size: 130%;
-	color: #6e8377;
-	border-color: #b9c3be;
-	border-style: solid;
-	border-width: 0px 0px 1px 0px;
-}
-
-h5 {
-	font-size: 120%;
-	color: #6e8377;
-}
-
-h6 {
-	font-size: 110%;
-	color: #6e8377;
-}
-
-/* list */
-
-dt {
-	color: #6e8377;
-	border-color: #b9c3be;
-	border-style: dashed;
-	border-width: 1px;
-	padding: 5px;
-}
-
-ul {
-	color: #6e8377;
-}
-
-/* table */
-
-table {
-	border: 1px solid #cccccc;
-	border-collapse: collapse;
-}
-
-th {
-	vertical-align: top;
-	padding: 5px;
-}
-
-td {
-	vertical-align: top;
-	padding: 5px;
-}
-
-div#method_list table {
-	border: none;
-}
-
-
-/* form */
-
-input {
-	background-color: #FFFFFF;
-	padding: 2px;
-	font-size: 10px;
-	color: #666666;
-	border: 1px solid #611022;
-	margin-bottom: 2px;
-}
-
-input[type=submit] {
-	background-color: #FFFFFF;
-	padding: 2px;
-	font-size: 10px;
-	color: #ffffff;
-	border: 1px solid #611022;
-	background-color: #E44268;
-	margin-bottom: 2px;
-}
-
-/* textarea */
-
-textarea {
-	background-color: #eaedeb;
-	font-family: monospace;
-	font-size: 12px;
-	overflow: auto;
-	width: 500px;
-	padding: 5px;
-}
-
-
-/* blockquote */
-
-blockquote {
-	color: #6e8377;
-	background-color: #eaedeb;
-	border-color: #6e8377;
-	border-style: dashed;
-	border-width: 1px;
-}
-
-/* media */
-
-@media print {
-	div#main	{ margin-left: 0px; }
-	div#side	{ display: none; }
-}
-
-@media screen {
-	div#main	{ margin-left: 0px; }
-	div#side	{ display: block; }
-}
-