bio-velvet 0.0.1
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- checksums.yaml +7 -0
- data/.document +5 -0
- data/.rspec +1 -0
- data/.travis.yml +12 -0
- data/Gemfile +17 -0
- data/LICENSE.txt +20 -0
- data/README.md +62 -0
- data/Rakefile +49 -0
- data/VERSION +1 -0
- data/lib/bio-velvet.rb +13 -0
- data/lib/bio-velvet/graph.rb +517 -0
- data/lib/bio-velvet/runner.rb +91 -0
- data/spec/bio-velvet_arc_array_spec.rb +123 -0
- data/spec/bio-velvet_graph_spec.rb +290 -0
- data/spec/bio-velvet_runner_spec.rb +67 -0
- data/spec/data/node_sequence/LastGraph +33 -0
- data/spec/data/node_sequence/contigs.fa +75 -0
- data/spec/data/runner_input.fa +18 -0
- data/spec/data/short_node_LastGraph +40 -0
- data/spec/data/short_node_sequence_test_graph +20 -0
- data/spec/data/velvet_test_reads_assembly/Graph +3465 -0
- data/spec/data/velvet_test_reads_assembly/HOWTO_RECREATE +2 -0
- data/spec/data/velvet_test_reads_assembly/LastGraph +3462 -0
- data/spec/data/velvet_test_reads_assembly_read_tracking/Graph2 +45602 -0
- data/spec/data/velvet_test_reads_assembly_read_tracking/HOWTO_RECREATE +2 -0
- data/spec/data/velvet_test_trail_sequence_assembly/reads1.fa +18 -0
- data/spec/spec_helper.rb +14 -0
- metadata +211 -0
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