bio-ucsc-api 0.1.0 → 0.2.0
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- data/Gemfile +1 -0
- data/Gemfile.lock +14 -12
- data/README.rdoc +24 -3
- data/Rakefile +1 -1
- data/VERSION +1 -1
- data/bio-ucsc-api.gemspec +134 -4910
- data/lib/bio-ucsc-api.rb +1 -1
- data/lib/bio-ucsc.rb +24 -5
- data/lib/bio-ucsc/ce6.rb +39 -0
- data/lib/bio-ucsc/ce6/chaincaejap1.rb +81 -0
- data/lib/bio-ucsc/ce6/chaincaejap1link.rb +82 -0
- data/lib/bio-ucsc/ce6/chaincaepb2.rb +81 -0
- data/lib/bio-ucsc/ce6/chaincaepb2link.rb +82 -0
- data/lib/bio-ucsc/ce6/chaincaerem3.rb +81 -0
- data/lib/bio-ucsc/ce6/chaincaerem3link.rb +82 -0
- data/lib/bio-ucsc/ce6/chaincb3.rb +81 -0
- data/lib/bio-ucsc/ce6/chaincb3link.rb +82 -0
- data/lib/bio-ucsc/ce6/chainpripac1.rb +81 -0
- data/lib/bio-ucsc/ce6/chainpripac1link.rb +82 -0
- data/lib/bio-ucsc/ce6/chainself.rb +81 -0
- data/lib/bio-ucsc/ce6/chainselflink.rb +82 -0
- data/lib/bio-ucsc/ce6/db_connection.rb +56 -0
- data/lib/bio-ucsc/ce6/est.rb +81 -0
- data/lib/bio-ucsc/ce6/gap.rb +81 -0
- data/lib/bio-ucsc/ce6/gold.rb +81 -0
- data/lib/bio-ucsc/ce6/intronest.rb +81 -0
- data/lib/bio-ucsc/ce6/mrna.rb +81 -0
- data/lib/bio-ucsc/ce6/rmsk.rb +81 -0
- data/lib/bio-ucsc/ce6/t25mersrepeats.rb +55 -0
- data/lib/bio-ucsc/dm3.rb +48 -0
- data/lib/bio-ucsc/dm3/chainanogam1.rb +81 -0
- data/lib/bio-ucsc/dm3/chainanogam1link.rb +81 -0
- data/lib/bio-ucsc/dm3/chainapimel3.rb +81 -0
- data/lib/bio-ucsc/dm3/chainapimel3link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindp3.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindp3link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroana2.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroana2link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroere1.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroere1link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroper1.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroper1link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindrosec1.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindrosec1link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindrosim1.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindrosim1link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroyak2.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroyak2link.rb +81 -0
- data/lib/bio-ucsc/dm3/db_connection.rb +56 -0
- data/lib/bio-ucsc/dm3/est.rb +81 -0
- data/lib/bio-ucsc/dm3/gap.rb +81 -0
- data/lib/bio-ucsc/dm3/gold.rb +81 -0
- data/lib/bio-ucsc/dm3/intronest.rb +81 -0
- data/lib/bio-ucsc/dm3/mrna.rb +81 -0
- data/lib/bio-ucsc/dm3/rmsk.rb +81 -0
- data/lib/bio-ucsc/go.rb +19 -0
- data/lib/bio-ucsc/go/db_connection.rb +56 -0
- data/lib/bio-ucsc/hg18.rb +27 -3839
- data/lib/bio-ucsc/hg18/chainanocar1.rb +62 -30
- data/lib/bio-ucsc/hg18/chainbostau4.rb +61 -29
- data/lib/bio-ucsc/hg18/chainbraflo1.rb +61 -29
- data/lib/bio-ucsc/hg18/chaincaljac1.rb +62 -26
- data/lib/bio-ucsc/hg18/chaincanfam2.rb +61 -29
- data/lib/bio-ucsc/hg18/chaincavpor3.rb +61 -29
- data/lib/bio-ucsc/hg18/chaindanrer5.rb +61 -29
- data/lib/bio-ucsc/hg18/chainequcab1.rb +61 -29
- data/lib/bio-ucsc/hg18/chainfelcat3.rb +61 -29
- data/lib/bio-ucsc/hg18/chainfr2.rb +61 -29
- data/lib/bio-ucsc/hg18/chaingalgal3.rb +62 -30
- data/lib/bio-ucsc/hg18/chaingasacu1.rb +62 -30
- data/lib/bio-ucsc/hg18/chainmm9.rb +61 -29
- data/lib/bio-ucsc/hg18/chainmondom4.rb +62 -30
- data/lib/bio-ucsc/hg18/chainornana1.rb +61 -29
- data/lib/bio-ucsc/hg18/chainorylat2.rb +62 -30
- data/lib/bio-ucsc/hg18/chainpantro2.rb +61 -24
- data/lib/bio-ucsc/hg18/chainpetmar1.rb +61 -29
- data/lib/bio-ucsc/hg18/chainponabe2.rb +60 -23
- data/lib/bio-ucsc/hg18/chainrhemac2.rb +64 -32
- data/lib/bio-ucsc/hg18/chainrn4.rb +61 -29
- data/lib/bio-ucsc/hg18/chainself.rb +61 -23
- data/lib/bio-ucsc/hg18/chainstrpur2.rb +61 -25
- data/lib/bio-ucsc/hg18/chaintaegut1.rb +62 -30
- data/lib/bio-ucsc/hg18/chaintetnig2.rb +79 -0
- data/lib/bio-ucsc/hg18/chainxentro2.rb +62 -30
- data/lib/bio-ucsc/hg18/db_connection.rb +7 -7
- data/lib/bio-ucsc/hg18/gap.rb +61 -31
- data/lib/bio-ucsc/hg18/gold.rb +61 -34
- data/lib/bio-ucsc/hg18/intronest.rb +61 -29
- data/lib/bio-ucsc/hg18/rmsk.rb +56 -34
- data/lib/bio-ucsc/hg18/rmskrm327.rb +60 -29
- data/lib/bio-ucsc/hg19.rb +10 -1767
- data/lib/bio-ucsc/hg19/db_connection.rb +7 -7
- data/lib/bio-ucsc/hg19/description.rb +5 -13
- data/lib/bio-ucsc/hg19/gbcdnainfo.rb +4 -17
- data/lib/bio-ucsc/hgfixed.rb +19 -0
- data/lib/bio-ucsc/hgfixed/db_connection.rb +56 -0
- data/lib/bio-ucsc/mm9.rb +62 -0
- data/lib/bio-ucsc/mm9/chainanocar1.rb +79 -0
- data/lib/bio-ucsc/mm9/chainanocar1link.rb +79 -0
- data/lib/bio-ucsc/mm9/chainbostau4.rb +79 -0
- data/lib/bio-ucsc/mm9/chainbostau4link.rb +79 -0
- data/lib/bio-ucsc/mm9/chainbraflo1.rb +82 -0
- data/lib/bio-ucsc/mm9/chainbraflo1link.rb +82 -0
- data/lib/bio-ucsc/mm9/chaincanfam2.rb +82 -0
- data/lib/bio-ucsc/mm9/chaincanfam2link.rb +82 -0
- data/lib/bio-ucsc/mm9/chaincavpor3.rb +81 -0
- data/lib/bio-ucsc/mm9/chaincavpor3link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainfr2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainfr2link.rb +81 -0
- data/lib/bio-ucsc/mm9/chaingalgal3.rb +81 -0
- data/lib/bio-ucsc/mm9/chaingalgal3link.rb +81 -0
- data/lib/bio-ucsc/mm9/chaingasacu1.rb +81 -0
- data/lib/bio-ucsc/mm9/chaingasacu1link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainornana1.rb +81 -0
- data/lib/bio-ucsc/mm9/chainornana1link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainorylat2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainorylat2link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainpantro2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainpantro2link.rb +82 -0
- data/lib/bio-ucsc/mm9/chainpetmar1.rb +81 -0
- data/lib/bio-ucsc/mm9/chainpetmar1link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainponabe2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainponabe2link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainrhemac2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainrhemac2link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainrn4.rb +81 -0
- data/lib/bio-ucsc/mm9/chainrn4link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainxentro2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainxentro2link.rb +81 -0
- data/lib/bio-ucsc/mm9/db_connection.rb +56 -0
- data/lib/bio-ucsc/mm9/est.rb +81 -0
- data/lib/bio-ucsc/mm9/gap.rb +81 -0
- data/lib/bio-ucsc/mm9/gold.rb +81 -0
- data/lib/bio-ucsc/mm9/intronest.rb +81 -0
- data/lib/bio-ucsc/mm9/mrna.rb +81 -0
- data/lib/bio-ucsc/mm9/rmsk.rb +78 -0
- data/lib/bio-ucsc/proteome.rb +19 -0
- data/lib/bio-ucsc/proteome/db_connection.rb +61 -0
- data/lib/bio-ucsc/reference.rb +175 -0
- data/lib/bio-ucsc/table_class_detector.rb +481 -0
- data/lib/bio-ucsc/uniprot.rb +19 -0
- data/lib/bio-ucsc/uniprot/db_connection.rb +61 -0
- data/lib/bio-ucsc/visigene.rb +19 -0
- data/lib/bio-ucsc/visigene/db_connection.rb +56 -0
- data/spec/ce6_spec.rb +1238 -0
- data/spec/dm3_spec.rb +2484 -0
- data/spec/go_spec.rb +210 -0
- data/spec/hg18/all_bacends_spec.rb +2 -2
- data/spec/hg18/all_fosends_spec.rb +2 -2
- data/spec/hg18/chainanocar1_spec.rb +4 -4
- data/spec/hg18/chainbostau4_spec.rb +4 -4
- data/spec/hg18/chainbraflo1_spec.rb +4 -4
- data/spec/hg18/chaincaljac1_spec.rb +4 -4
- data/spec/hg18/chaincanfam2_spec.rb +4 -4
- data/spec/hg18/chaincavpor3_spec.rb +4 -4
- data/spec/hg18/chaindanrer5_spec.rb +4 -4
- data/spec/hg18/chainequcab1_spec.rb +4 -4
- data/spec/hg18/chainfelcat3_spec.rb +4 -4
- data/spec/hg18/chainfr2_spec.rb +4 -4
- data/spec/hg18/chaingalgal3_spec.rb +4 -4
- data/spec/hg18/chaingasacu1_spec.rb +4 -4
- data/spec/hg18/chainmm9_spec.rb +4 -4
- data/spec/hg18/chainmondom4_spec.rb +4 -4
- data/spec/hg18/chainornana1_spec.rb +4 -4
- data/spec/hg18/chainorylat2_spec.rb +4 -4
- data/spec/hg18/chainpantro2_spec.rb +4 -4
- data/spec/hg18/chainpetmar1_spec.rb +4 -4
- data/spec/hg18/chainponabe2_spec.rb +4 -4
- data/spec/hg18/chainrhemac2_spec.rb +4 -4
- data/spec/hg18/chainrn4_spec.rb +4 -4
- data/spec/hg18/chainself_spec.rb +3 -3
- data/spec/hg18/chainstrpur2_spec.rb +4 -4
- data/spec/hg18/chaintaegut1_spec.rb +4 -4
- data/spec/hg18/chaintetnig2_spec.rb +17 -0
- data/spec/hg18/chainxentro2_spec.rb +4 -4
- data/spec/hg18/gap_spec.rb +3 -3
- data/spec/hg18/gold_spec.rb +3 -3
- data/spec/hg18/intronest_spec.rb +3 -3
- data/spec/hg18/rmsk_spec.rb +9 -0
- data/spec/hg18/rmskrm327_spec.rb +11 -0
- data/spec/hg18/snp126orthopantro2rhemac2_spec.rb +2 -2
- data/spec/hg19/ccdsgene_spec.rb +0 -7
- data/spec/hg19/ccdsinfo_spec.rb +1 -1
- data/spec/hg19/description_spec.rb +1 -12
- data/spec/hg19/ensgene_spec.rb +6 -15
- data/spec/hg19/gbcdnainfo_spec.rb +0 -11
- data/spec/hg19/hapmapalleleschimp_spec.rb +3 -3
- data/spec/hg19/hapmapallelesmacaque_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsasw_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsceu_spec.rb +3 -3
- data/spec/hg19/hapmapsnpschb_spec.rb +3 -3
- data/spec/hg19/hapmapsnpschd_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsgih_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsjpt_spec.rb +3 -3
- data/spec/hg19/hapmapsnpslwk_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsmex_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsmkk_spec.rb +3 -3
- data/spec/hg19/hapmapsnpstsi_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsyri_spec.rb +3 -3
- data/spec/hg19/hgikmc_spec.rb +11 -11
- data/spec/hg19/refseqali_spec.rb +0 -8
- data/spec/hg19/xenoest_spec.rb +0 -8
- data/spec/hg19/xenomrna_spec.rb +0 -8
- data/spec/{hg19 → hgCentral}/hgcentral_wikitrack_spec.rb +0 -0
- data/spec/{hg18 → hgFixed}/hgfixed_affyexps_spec.rb +0 -0
- data/spec/{hg18 → hgFixed}/hgfixed_encoderegioninfo_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gladhumesotherdata_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gnfhumanatlas2all_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gnfhumanatlas2allratio_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gnfhumanatlas2median_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gnfhumanatlas2medianexps_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gnfhumanatlas2medianratio_spec.rb +0 -0
- data/spec/{hg18 → hgFixed}/hgfixed_transmapgeneucscgenes_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_transmapsrcmrna_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_transmapsrcrefseq_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_transmapsrcsplicedest_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_transmapsrcucscgenes_spec.rb +0 -0
- data/spec/hgfixed_spec.rb +1130 -0
- data/spec/mm9_spec.rb +6226 -0
- data/spec/proteome_spec.rb +330 -0
- data/spec/reference_spec.rb +141 -0
- data/spec/uniprot_spec.rb +380 -0
- data/spec/visigene_spec.rb +430 -0
- metadata +237 -5021
- data/lib/bio-ucsc/hg18/acembly.rb +0 -24
- data/lib/bio-ucsc/hg18/acemblyclass.rb +0 -24
- data/lib/bio-ucsc/hg18/acemblypep.rb +0 -23
- data/lib/bio-ucsc/hg18/acescan.rb +0 -23
- data/lib/bio-ucsc/hg18/activerecord.rb +0 -325
- data/lib/bio-ucsc/hg18/affyallexonprobes.rb +0 -24
- data/lib/bio-ucsc/hg18/affyexontissues.rb +0 -24
- data/lib/bio-ucsc/hg18/affyexontissuesgs.rb +0 -22
- data/lib/bio-ucsc/hg18/affyexontissuesgsmedian.rb +0 -22
- data/lib/bio-ucsc/hg18/affyexontissuesgsmediandist.rb +0 -22
- data/lib/bio-ucsc/hg18/affygnf1h.rb +0 -25
- data/lib/bio-ucsc/hg18/affyratio.rb +0 -28
- data/lib/bio-ucsc/hg18/affytxnphase3fragshdf.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshelabottomstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshelacyto.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshelanuclear.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshelatopstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshepg2bottomstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshepg2cyto.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshepg2nuclear.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshepg2topstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragsjurkat.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragsnccit.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragspc3.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragssk_n_as.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragsu87mg.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3hdf.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3helabottomstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3helacyto.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3helanuclear.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3helatopstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3hepg2bottomstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3hepg2cyto.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3hepg2nuclear.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3hepg2topstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3jurkat.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3nccit.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3pc3.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3sk_n_as.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3u87mg.rb +0 -25
- data/lib/bio-ucsc/hg18/affyu133.rb +0 -25
- data/lib/bio-ucsc/hg18/affyu133plus2.rb +0 -25
- data/lib/bio-ucsc/hg18/affyu95.rb +0 -26
- data/lib/bio-ucsc/hg18/agilentcgh105a.rb +0 -23
- data/lib/bio-ucsc/hg18/agilentcgh1x1m.rb +0 -25
- data/lib/bio-ucsc/hg18/agilentcgh244a.rb +0 -23
- data/lib/bio-ucsc/hg18/agilentcgh2x400k.rb +0 -24
- data/lib/bio-ucsc/hg18/agilentcgh44k.rb +0 -23
- data/lib/bio-ucsc/hg18/agilentcgh4x180k.rb +0 -24
- data/lib/bio-ucsc/hg18/agilentcgh8x60k.rb +0 -24
- data/lib/bio-ucsc/hg18/agilenthrd1x1m.rb +0 -24
- data/lib/bio-ucsc/hg18/all_bacends.rb +0 -23
- data/lib/bio-ucsc/hg18/all_est.rb +0 -23
- data/lib/bio-ucsc/hg18/all_fosends.rb +0 -23
- data/lib/bio-ucsc/hg18/all_mrna.rb +0 -23
- data/lib/bio-ucsc/hg18/allenbrainali.rb +0 -26
- data/lib/bio-ucsc/hg18/allenbrainurl.rb +0 -27
- data/lib/bio-ucsc/hg18/augustusabinitio.rb +0 -24
- data/lib/bio-ucsc/hg18/augustushints.rb +0 -24
- data/lib/bio-ucsc/hg18/augustusxra.rb +0 -24
- data/lib/bio-ucsc/hg18/bacendpairs.rb +0 -28
- data/lib/bio-ucsc/hg18/biocycpathway.rb +0 -22
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignadipose.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignadiposeallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbrain.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbrainallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbreast.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbreastallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbt474.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbt474allrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperaligncolon.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperaligncolonallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignheart.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignheartallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignhme.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignhmeallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignliver.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignliverallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignlymphnode.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignlymphnodeallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignmb435.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignmb435allrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignmcf7.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignmcf7allrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignskelmuscle.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignskelmuscleallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignt47d.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignt47dallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperaligntestes.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperaligntestesallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/ccdsgene.rb +0 -23
- data/lib/bio-ucsc/hg18/ccdsinfo.rb +0 -23
- data/lib/bio-ucsc/hg18/ccdskgmap.rb +0 -23
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- data/lib/bio-ucsc/hg19/xenorefflat.rb +0 -24
- data/lib/bio-ucsc/hg19/xenorefgene.rb +0 -27
- data/lib/bio-ucsc/hg19/xenorefseqali.rb +0 -24
- data/spec/hg18/chaintetnig1_spec.rb +0 -16
- data/spec/hg18/hgcentral_wikitrack_spec.rb +0 -16
- data/spec/hg18/hgfixed_gladhumesotherdata_spec.rb +0 -15
- data/spec/hg18/hgfixed_gnfhumanatlas2all_spec.rb +0 -15
- data/spec/hg18/hgfixed_gnfhumanatlas2allratio_spec.rb +0 -15
- data/spec/hg18/hgfixed_gnfhumanatlas2median_spec.rb +0 -15
- data/spec/hg18/hgfixed_gnfhumanatlas2medianratio_spec.rb +0 -15
- data/spec/hg18/hgfixed_transmapsrcmrna_spec.rb +0 -16
- data/spec/hg18/hgfixed_transmapsrcsplicedest_spec.rb +0 -16
- data/spec/hg18/hgfixed_transmapsrcucscgenes_spec.rb +0 -16
- data/spec/hg18/omimgene_spec.rb +0 -16
- data/spec/hg18/omimgenemap_spec.rb +0 -15
- data/spec/hg18/omimmorbidmap_spec.rb +0 -15
- data/spec/hg18/omimtoknowncanonical_spec.rb +0 -15
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- data/spec/hg19/omimmorbidmap_spec.rb +0 -15
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# = hg19/wgencodeuwhistonehek293h3k4me3stdpkrep1.rb
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# Copyright::
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# Copyright (C) 2011 MISHIMA, Hiroyuki
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# <missy at be.to / hmishima at nagasaki-u.ac.jp>
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# License:: The Ruby licence (Ryby's / GPLv2 dual)
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# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHek293H3k4me3StdPkRep1 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHek293H3k4me3StdPkRep1'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehek293h3k4me3stdpkrep2.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHek293H3k4me3StdPkRep2 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHek293H3k4me3StdPkRep2'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k27me3stdhotspotsrep1.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k27me3StdHotspotsRep1 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k27me3StdHotspotsRep1'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k27me3stdhotspotsrep2.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k27me3StdHotspotsRep2 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k27me3StdHotspotsRep2'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k27me3stdpkrep1.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k27me3StdPkRep1 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k27me3StdPkRep1'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k27me3stdpkrep2.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k27me3StdPkRep2 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k27me3StdPkRep2'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k36me3stdhotspotsrep1.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k36me3StdHotspotsRep1 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k36me3StdHotspotsRep1'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k36me3stdhotspotsrep2.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k36me3StdHotspotsRep2 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k36me3StdHotspotsRep2'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k36me3stdpkrep1.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k36me3StdPkRep1 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k36me3StdPkRep1'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k36me3stdpkrep2.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k36me3StdPkRep2 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k36me3StdPkRep2'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k4me3stdhotspotsrep1.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k4me3StdHotspotsRep1 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k4me3StdHotspotsRep1'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k4me3stdhotspotsrep2.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k4me3StdHotspotsRep2 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k4me3StdHotspotsRep2'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k4me3stdpkrep1.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHelas3H3k4me3StdPkRep1 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHelas3H3k4me3StdPkRep1'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehelas3h3k4me3stdpkrep2.rb
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3
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# Copyright::
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4
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# Copyright (C) 2011 MISHIMA, Hiroyuki
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# <missy at be.to / hmishima at nagasaki-u.ac.jp>
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# License:: The Ruby licence (Ryby's / GPLv2 dual)
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#
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8
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# = Table desfription in UCSC Table Browser
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9
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# This track is produced as part of the ENCODE Project. This track
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10
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# displays genome-wide maps of histone modifications in different cell
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11
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# lines, using ChIP-seq high-throughput sequencing.
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12
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#
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# = ommitted dynamic method(s) due to the method name collision
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# none
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module Bio
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module Ucsc
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module Hg19
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class WgEncodeUwHistoneHelas3H3k4me3StdPkRep2 < DBConnection
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extend Bio::Ucsc::Hg19::QueryUsingChromBin
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set_table_name 'wgEncodeUwHistoneHelas3H3k4me3StdPkRep2'
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set_primary_key nil
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end
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end # module Hg19
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end # module Ucsc
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end # Bio
|
@@ -1,26 +0,0 @@
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1
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# -*- coding: utf-8 -*-
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2
|
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# = hg19/wgencodeuwhistonehepg2h3k27me3stdhotspotsrep1.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
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class WgEncodeUwHistoneHepg2H3k27me3StdHotspotsRep1 < DBConnection
|
20
|
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extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHepg2H3k27me3StdHotspotsRep1'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehepg2h3k27me3stdhotspotsrep2.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHepg2H3k27me3StdHotspotsRep2 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHepg2H3k27me3StdHotspotsRep2'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|
@@ -1,26 +0,0 @@
|
|
1
|
-
# -*- coding: utf-8 -*-
|
2
|
-
# = hg19/wgencodeuwhistonehepg2h3k27me3stdpkrep1.rb
|
3
|
-
# Copyright::
|
4
|
-
# Copyright (C) 2011 MISHIMA, Hiroyuki
|
5
|
-
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
|
6
|
-
# License:: The Ruby licence (Ryby's / GPLv2 dual)
|
7
|
-
#
|
8
|
-
# = Table desfription in UCSC Table Browser
|
9
|
-
# This track is produced as part of the ENCODE Project. This track
|
10
|
-
# displays genome-wide maps of histone modifications in different cell
|
11
|
-
# lines, using ChIP-seq high-throughput sequencing.
|
12
|
-
#
|
13
|
-
# = ommitted dynamic method(s) due to the method name collision
|
14
|
-
# none
|
15
|
-
|
16
|
-
module Bio
|
17
|
-
module Ucsc
|
18
|
-
module Hg19
|
19
|
-
class WgEncodeUwHistoneHepg2H3k27me3StdPkRep1 < DBConnection
|
20
|
-
extend Bio::Ucsc::Hg19::QueryUsingChromBin
|
21
|
-
set_table_name 'wgEncodeUwHistoneHepg2H3k27me3StdPkRep1'
|
22
|
-
set_primary_key nil
|
23
|
-
end
|
24
|
-
end # module Hg19
|
25
|
-
end # module Ucsc
|
26
|
-
end # Bio
|