bio-ucsc-api 0.1.0 → 0.2.0
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- data/Gemfile +1 -0
- data/Gemfile.lock +14 -12
- data/README.rdoc +24 -3
- data/Rakefile +1 -1
- data/VERSION +1 -1
- data/bio-ucsc-api.gemspec +134 -4910
- data/lib/bio-ucsc-api.rb +1 -1
- data/lib/bio-ucsc.rb +24 -5
- data/lib/bio-ucsc/ce6.rb +39 -0
- data/lib/bio-ucsc/ce6/chaincaejap1.rb +81 -0
- data/lib/bio-ucsc/ce6/chaincaejap1link.rb +82 -0
- data/lib/bio-ucsc/ce6/chaincaepb2.rb +81 -0
- data/lib/bio-ucsc/ce6/chaincaepb2link.rb +82 -0
- data/lib/bio-ucsc/ce6/chaincaerem3.rb +81 -0
- data/lib/bio-ucsc/ce6/chaincaerem3link.rb +82 -0
- data/lib/bio-ucsc/ce6/chaincb3.rb +81 -0
- data/lib/bio-ucsc/ce6/chaincb3link.rb +82 -0
- data/lib/bio-ucsc/ce6/chainpripac1.rb +81 -0
- data/lib/bio-ucsc/ce6/chainpripac1link.rb +82 -0
- data/lib/bio-ucsc/ce6/chainself.rb +81 -0
- data/lib/bio-ucsc/ce6/chainselflink.rb +82 -0
- data/lib/bio-ucsc/ce6/db_connection.rb +56 -0
- data/lib/bio-ucsc/ce6/est.rb +81 -0
- data/lib/bio-ucsc/ce6/gap.rb +81 -0
- data/lib/bio-ucsc/ce6/gold.rb +81 -0
- data/lib/bio-ucsc/ce6/intronest.rb +81 -0
- data/lib/bio-ucsc/ce6/mrna.rb +81 -0
- data/lib/bio-ucsc/ce6/rmsk.rb +81 -0
- data/lib/bio-ucsc/ce6/t25mersrepeats.rb +55 -0
- data/lib/bio-ucsc/dm3.rb +48 -0
- data/lib/bio-ucsc/dm3/chainanogam1.rb +81 -0
- data/lib/bio-ucsc/dm3/chainanogam1link.rb +81 -0
- data/lib/bio-ucsc/dm3/chainapimel3.rb +81 -0
- data/lib/bio-ucsc/dm3/chainapimel3link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindp3.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindp3link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroana2.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroana2link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroere1.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroere1link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroper1.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroper1link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindrosec1.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindrosec1link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindrosim1.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindrosim1link.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroyak2.rb +81 -0
- data/lib/bio-ucsc/dm3/chaindroyak2link.rb +81 -0
- data/lib/bio-ucsc/dm3/db_connection.rb +56 -0
- data/lib/bio-ucsc/dm3/est.rb +81 -0
- data/lib/bio-ucsc/dm3/gap.rb +81 -0
- data/lib/bio-ucsc/dm3/gold.rb +81 -0
- data/lib/bio-ucsc/dm3/intronest.rb +81 -0
- data/lib/bio-ucsc/dm3/mrna.rb +81 -0
- data/lib/bio-ucsc/dm3/rmsk.rb +81 -0
- data/lib/bio-ucsc/go.rb +19 -0
- data/lib/bio-ucsc/go/db_connection.rb +56 -0
- data/lib/bio-ucsc/hg18.rb +27 -3839
- data/lib/bio-ucsc/hg18/chainanocar1.rb +62 -30
- data/lib/bio-ucsc/hg18/chainbostau4.rb +61 -29
- data/lib/bio-ucsc/hg18/chainbraflo1.rb +61 -29
- data/lib/bio-ucsc/hg18/chaincaljac1.rb +62 -26
- data/lib/bio-ucsc/hg18/chaincanfam2.rb +61 -29
- data/lib/bio-ucsc/hg18/chaincavpor3.rb +61 -29
- data/lib/bio-ucsc/hg18/chaindanrer5.rb +61 -29
- data/lib/bio-ucsc/hg18/chainequcab1.rb +61 -29
- data/lib/bio-ucsc/hg18/chainfelcat3.rb +61 -29
- data/lib/bio-ucsc/hg18/chainfr2.rb +61 -29
- data/lib/bio-ucsc/hg18/chaingalgal3.rb +62 -30
- data/lib/bio-ucsc/hg18/chaingasacu1.rb +62 -30
- data/lib/bio-ucsc/hg18/chainmm9.rb +61 -29
- data/lib/bio-ucsc/hg18/chainmondom4.rb +62 -30
- data/lib/bio-ucsc/hg18/chainornana1.rb +61 -29
- data/lib/bio-ucsc/hg18/chainorylat2.rb +62 -30
- data/lib/bio-ucsc/hg18/chainpantro2.rb +61 -24
- data/lib/bio-ucsc/hg18/chainpetmar1.rb +61 -29
- data/lib/bio-ucsc/hg18/chainponabe2.rb +60 -23
- data/lib/bio-ucsc/hg18/chainrhemac2.rb +64 -32
- data/lib/bio-ucsc/hg18/chainrn4.rb +61 -29
- data/lib/bio-ucsc/hg18/chainself.rb +61 -23
- data/lib/bio-ucsc/hg18/chainstrpur2.rb +61 -25
- data/lib/bio-ucsc/hg18/chaintaegut1.rb +62 -30
- data/lib/bio-ucsc/hg18/chaintetnig2.rb +79 -0
- data/lib/bio-ucsc/hg18/chainxentro2.rb +62 -30
- data/lib/bio-ucsc/hg18/db_connection.rb +7 -7
- data/lib/bio-ucsc/hg18/gap.rb +61 -31
- data/lib/bio-ucsc/hg18/gold.rb +61 -34
- data/lib/bio-ucsc/hg18/intronest.rb +61 -29
- data/lib/bio-ucsc/hg18/rmsk.rb +56 -34
- data/lib/bio-ucsc/hg18/rmskrm327.rb +60 -29
- data/lib/bio-ucsc/hg19.rb +10 -1767
- data/lib/bio-ucsc/hg19/db_connection.rb +7 -7
- data/lib/bio-ucsc/hg19/description.rb +5 -13
- data/lib/bio-ucsc/hg19/gbcdnainfo.rb +4 -17
- data/lib/bio-ucsc/hgfixed.rb +19 -0
- data/lib/bio-ucsc/hgfixed/db_connection.rb +56 -0
- data/lib/bio-ucsc/mm9.rb +62 -0
- data/lib/bio-ucsc/mm9/chainanocar1.rb +79 -0
- data/lib/bio-ucsc/mm9/chainanocar1link.rb +79 -0
- data/lib/bio-ucsc/mm9/chainbostau4.rb +79 -0
- data/lib/bio-ucsc/mm9/chainbostau4link.rb +79 -0
- data/lib/bio-ucsc/mm9/chainbraflo1.rb +82 -0
- data/lib/bio-ucsc/mm9/chainbraflo1link.rb +82 -0
- data/lib/bio-ucsc/mm9/chaincanfam2.rb +82 -0
- data/lib/bio-ucsc/mm9/chaincanfam2link.rb +82 -0
- data/lib/bio-ucsc/mm9/chaincavpor3.rb +81 -0
- data/lib/bio-ucsc/mm9/chaincavpor3link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainfr2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainfr2link.rb +81 -0
- data/lib/bio-ucsc/mm9/chaingalgal3.rb +81 -0
- data/lib/bio-ucsc/mm9/chaingalgal3link.rb +81 -0
- data/lib/bio-ucsc/mm9/chaingasacu1.rb +81 -0
- data/lib/bio-ucsc/mm9/chaingasacu1link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainornana1.rb +81 -0
- data/lib/bio-ucsc/mm9/chainornana1link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainorylat2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainorylat2link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainpantro2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainpantro2link.rb +82 -0
- data/lib/bio-ucsc/mm9/chainpetmar1.rb +81 -0
- data/lib/bio-ucsc/mm9/chainpetmar1link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainponabe2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainponabe2link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainrhemac2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainrhemac2link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainrn4.rb +81 -0
- data/lib/bio-ucsc/mm9/chainrn4link.rb +81 -0
- data/lib/bio-ucsc/mm9/chainxentro2.rb +81 -0
- data/lib/bio-ucsc/mm9/chainxentro2link.rb +81 -0
- data/lib/bio-ucsc/mm9/db_connection.rb +56 -0
- data/lib/bio-ucsc/mm9/est.rb +81 -0
- data/lib/bio-ucsc/mm9/gap.rb +81 -0
- data/lib/bio-ucsc/mm9/gold.rb +81 -0
- data/lib/bio-ucsc/mm9/intronest.rb +81 -0
- data/lib/bio-ucsc/mm9/mrna.rb +81 -0
- data/lib/bio-ucsc/mm9/rmsk.rb +78 -0
- data/lib/bio-ucsc/proteome.rb +19 -0
- data/lib/bio-ucsc/proteome/db_connection.rb +61 -0
- data/lib/bio-ucsc/reference.rb +175 -0
- data/lib/bio-ucsc/table_class_detector.rb +481 -0
- data/lib/bio-ucsc/uniprot.rb +19 -0
- data/lib/bio-ucsc/uniprot/db_connection.rb +61 -0
- data/lib/bio-ucsc/visigene.rb +19 -0
- data/lib/bio-ucsc/visigene/db_connection.rb +56 -0
- data/spec/ce6_spec.rb +1238 -0
- data/spec/dm3_spec.rb +2484 -0
- data/spec/go_spec.rb +210 -0
- data/spec/hg18/all_bacends_spec.rb +2 -2
- data/spec/hg18/all_fosends_spec.rb +2 -2
- data/spec/hg18/chainanocar1_spec.rb +4 -4
- data/spec/hg18/chainbostau4_spec.rb +4 -4
- data/spec/hg18/chainbraflo1_spec.rb +4 -4
- data/spec/hg18/chaincaljac1_spec.rb +4 -4
- data/spec/hg18/chaincanfam2_spec.rb +4 -4
- data/spec/hg18/chaincavpor3_spec.rb +4 -4
- data/spec/hg18/chaindanrer5_spec.rb +4 -4
- data/spec/hg18/chainequcab1_spec.rb +4 -4
- data/spec/hg18/chainfelcat3_spec.rb +4 -4
- data/spec/hg18/chainfr2_spec.rb +4 -4
- data/spec/hg18/chaingalgal3_spec.rb +4 -4
- data/spec/hg18/chaingasacu1_spec.rb +4 -4
- data/spec/hg18/chainmm9_spec.rb +4 -4
- data/spec/hg18/chainmondom4_spec.rb +4 -4
- data/spec/hg18/chainornana1_spec.rb +4 -4
- data/spec/hg18/chainorylat2_spec.rb +4 -4
- data/spec/hg18/chainpantro2_spec.rb +4 -4
- data/spec/hg18/chainpetmar1_spec.rb +4 -4
- data/spec/hg18/chainponabe2_spec.rb +4 -4
- data/spec/hg18/chainrhemac2_spec.rb +4 -4
- data/spec/hg18/chainrn4_spec.rb +4 -4
- data/spec/hg18/chainself_spec.rb +3 -3
- data/spec/hg18/chainstrpur2_spec.rb +4 -4
- data/spec/hg18/chaintaegut1_spec.rb +4 -4
- data/spec/hg18/chaintetnig2_spec.rb +17 -0
- data/spec/hg18/chainxentro2_spec.rb +4 -4
- data/spec/hg18/gap_spec.rb +3 -3
- data/spec/hg18/gold_spec.rb +3 -3
- data/spec/hg18/intronest_spec.rb +3 -3
- data/spec/hg18/rmsk_spec.rb +9 -0
- data/spec/hg18/rmskrm327_spec.rb +11 -0
- data/spec/hg18/snp126orthopantro2rhemac2_spec.rb +2 -2
- data/spec/hg19/ccdsgene_spec.rb +0 -7
- data/spec/hg19/ccdsinfo_spec.rb +1 -1
- data/spec/hg19/description_spec.rb +1 -12
- data/spec/hg19/ensgene_spec.rb +6 -15
- data/spec/hg19/gbcdnainfo_spec.rb +0 -11
- data/spec/hg19/hapmapalleleschimp_spec.rb +3 -3
- data/spec/hg19/hapmapallelesmacaque_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsasw_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsceu_spec.rb +3 -3
- data/spec/hg19/hapmapsnpschb_spec.rb +3 -3
- data/spec/hg19/hapmapsnpschd_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsgih_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsjpt_spec.rb +3 -3
- data/spec/hg19/hapmapsnpslwk_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsmex_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsmkk_spec.rb +3 -3
- data/spec/hg19/hapmapsnpstsi_spec.rb +3 -3
- data/spec/hg19/hapmapsnpsyri_spec.rb +3 -3
- data/spec/hg19/hgikmc_spec.rb +11 -11
- data/spec/hg19/refseqali_spec.rb +0 -8
- data/spec/hg19/xenoest_spec.rb +0 -8
- data/spec/hg19/xenomrna_spec.rb +0 -8
- data/spec/{hg19 → hgCentral}/hgcentral_wikitrack_spec.rb +0 -0
- data/spec/{hg18 → hgFixed}/hgfixed_affyexps_spec.rb +0 -0
- data/spec/{hg18 → hgFixed}/hgfixed_encoderegioninfo_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gladhumesotherdata_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gnfhumanatlas2all_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gnfhumanatlas2allratio_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gnfhumanatlas2median_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gnfhumanatlas2medianexps_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_gnfhumanatlas2medianratio_spec.rb +0 -0
- data/spec/{hg18 → hgFixed}/hgfixed_transmapgeneucscgenes_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_transmapsrcmrna_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_transmapsrcrefseq_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_transmapsrcsplicedest_spec.rb +0 -0
- data/spec/{hg19 → hgFixed}/hgfixed_transmapsrcucscgenes_spec.rb +0 -0
- data/spec/hgfixed_spec.rb +1130 -0
- data/spec/mm9_spec.rb +6226 -0
- data/spec/proteome_spec.rb +330 -0
- data/spec/reference_spec.rb +141 -0
- data/spec/uniprot_spec.rb +380 -0
- data/spec/visigene_spec.rb +430 -0
- metadata +237 -5021
- data/lib/bio-ucsc/hg18/acembly.rb +0 -24
- data/lib/bio-ucsc/hg18/acemblyclass.rb +0 -24
- data/lib/bio-ucsc/hg18/acemblypep.rb +0 -23
- data/lib/bio-ucsc/hg18/acescan.rb +0 -23
- data/lib/bio-ucsc/hg18/activerecord.rb +0 -325
- data/lib/bio-ucsc/hg18/affyallexonprobes.rb +0 -24
- data/lib/bio-ucsc/hg18/affyexontissues.rb +0 -24
- data/lib/bio-ucsc/hg18/affyexontissuesgs.rb +0 -22
- data/lib/bio-ucsc/hg18/affyexontissuesgsmedian.rb +0 -22
- data/lib/bio-ucsc/hg18/affyexontissuesgsmediandist.rb +0 -22
- data/lib/bio-ucsc/hg18/affygnf1h.rb +0 -25
- data/lib/bio-ucsc/hg18/affyratio.rb +0 -28
- data/lib/bio-ucsc/hg18/affytxnphase3fragshdf.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshelabottomstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshelacyto.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshelanuclear.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshelatopstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshepg2bottomstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshepg2cyto.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshepg2nuclear.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragshepg2topstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragsjurkat.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragsnccit.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragspc3.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragssk_n_as.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3fragsu87mg.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3hdf.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3helabottomstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3helacyto.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3helanuclear.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3helatopstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3hepg2bottomstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3hepg2cyto.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3hepg2nuclear.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3hepg2topstrand.rb +0 -24
- data/lib/bio-ucsc/hg18/affytxnphase3jurkat.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3nccit.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3pc3.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3sk_n_as.rb +0 -25
- data/lib/bio-ucsc/hg18/affytxnphase3u87mg.rb +0 -25
- data/lib/bio-ucsc/hg18/affyu133.rb +0 -25
- data/lib/bio-ucsc/hg18/affyu133plus2.rb +0 -25
- data/lib/bio-ucsc/hg18/affyu95.rb +0 -26
- data/lib/bio-ucsc/hg18/agilentcgh105a.rb +0 -23
- data/lib/bio-ucsc/hg18/agilentcgh1x1m.rb +0 -25
- data/lib/bio-ucsc/hg18/agilentcgh244a.rb +0 -23
- data/lib/bio-ucsc/hg18/agilentcgh2x400k.rb +0 -24
- data/lib/bio-ucsc/hg18/agilentcgh44k.rb +0 -23
- data/lib/bio-ucsc/hg18/agilentcgh4x180k.rb +0 -24
- data/lib/bio-ucsc/hg18/agilentcgh8x60k.rb +0 -24
- data/lib/bio-ucsc/hg18/agilenthrd1x1m.rb +0 -24
- data/lib/bio-ucsc/hg18/all_bacends.rb +0 -23
- data/lib/bio-ucsc/hg18/all_est.rb +0 -23
- data/lib/bio-ucsc/hg18/all_fosends.rb +0 -23
- data/lib/bio-ucsc/hg18/all_mrna.rb +0 -23
- data/lib/bio-ucsc/hg18/allenbrainali.rb +0 -26
- data/lib/bio-ucsc/hg18/allenbrainurl.rb +0 -27
- data/lib/bio-ucsc/hg18/augustusabinitio.rb +0 -24
- data/lib/bio-ucsc/hg18/augustushints.rb +0 -24
- data/lib/bio-ucsc/hg18/augustusxra.rb +0 -24
- data/lib/bio-ucsc/hg18/bacendpairs.rb +0 -28
- data/lib/bio-ucsc/hg18/biocycpathway.rb +0 -22
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignadipose.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignadiposeallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbrain.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbrainallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbreast.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbreastallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbt474.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignbt474allrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperaligncolon.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperaligncolonallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignheart.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignheartallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignhme.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignhmeallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignliver.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignliverallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignlymphnode.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignlymphnodeallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignmb435.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignmb435allrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignmcf7.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignmcf7allrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignskelmuscle.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignskelmuscleallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignt47d.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperalignt47dallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperaligntestes.rb +0 -23
- data/lib/bio-ucsc/hg18/burgernaseqgemmapperaligntestesallrawsignal.rb +0 -23
- data/lib/bio-ucsc/hg18/ccdsgene.rb +0 -23
- data/lib/bio-ucsc/hg18/ccdsinfo.rb +0 -23
- data/lib/bio-ucsc/hg18/ccdskgmap.rb +0 -23
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- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k27me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k27me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k27me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k36me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k36me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k36me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k36me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k4me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k4me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k4me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonek562h3k4me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonemcf7h3k4me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonemcf7h3k4me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenb4h3k4me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenb4h3k4me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhdfneoh3k4me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhdfneoh3k4me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhdfneoh3k4me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhdfneoh3k4me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k27me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k27me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k27me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k27me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k36me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k36me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k36me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k36me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k4me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k4me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k4me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonenhekh3k4me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k27me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k27me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k27me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k27me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k36me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k36me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k36me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k36me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k4me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k4me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k4me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesaech3k4me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k27me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k27me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k27me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k27me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k36me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k36me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k36me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k36me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k4me3stdhotspotsrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k4me3stdhotspotsrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k4me3stdpkrep1.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwhistonesknshrah3k4me3stdpkrep2.rb +0 -26
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag04449ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag04449ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag04449ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag04449ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag04450ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag04450ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag09309ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag09309ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag09309ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag09309ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag09319ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag09319ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag09319ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag09319ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag10803ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag10803ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag10803ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsag10803ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsaoafctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsaoafctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsaoafctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsaoafctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsbjctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsbjctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsbjctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsbjctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbscaco2ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbscaco2ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbscaco2ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbscaco2ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm06990ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm06990ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm06990ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm06990ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12801ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12801ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12864ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12864ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12864ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12864ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12865ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12865ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12865ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12865ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12872ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12872ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12872ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12872ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12873ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12873ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12873ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12873ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12874ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12874ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12874ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12874ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12875ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12875ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12875ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12875ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12878ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12878ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12878ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsgm12878ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshaspctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshaspctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshbmecctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshbmecctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshbmecctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshbmecctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshcfaactcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshcfaactcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshcpectcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshcpectcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshcpectcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshcpectcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsheectcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsheectcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsheectcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsheectcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshek293ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshek293ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshek293ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshek293ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshelas3ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshelas3ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshelas3ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshelas3ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshepg2ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshepg2ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshepg2ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshepg2ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshl60ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshl60ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshmecctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshmecctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshmfctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshmfctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshmfctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshmfctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshpafctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshpafctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshpafctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshpafctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshpfctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshpfctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshpfctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshpfctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshrectcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshrectcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshrectcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshrectcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshrpectcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshrpectcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshuvecctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshuvecctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshuvecctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbshuvecctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsk562ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsk562ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsk562ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsk562ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsnhekctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsnhekctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsnhekctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbsnhekctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbssaecctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbssaecctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbssaecctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbssaecctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbssknshractcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbssknshractcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbssknshractcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbssknshractcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbswerirb1ctcfstdhotspotsrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbswerirb1ctcfstdhotspotsrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbswerirb1ctcfstdpkrep1.rb +0 -27
- data/lib/bio-ucsc/hg19/wgencodeuwtfbswerirb1ctcfstdpkrep2.rb +0 -27
- data/lib/bio-ucsc/hg19/wgrna.rb +0 -28
- data/lib/bio-ucsc/hg19/xenoest.rb +0 -27
- data/lib/bio-ucsc/hg19/xenomrna.rb +0 -25
- data/lib/bio-ucsc/hg19/xenorefflat.rb +0 -24
- data/lib/bio-ucsc/hg19/xenorefgene.rb +0 -27
- data/lib/bio-ucsc/hg19/xenorefseqali.rb +0 -24
- data/spec/hg18/chaintetnig1_spec.rb +0 -16
- data/spec/hg18/hgcentral_wikitrack_spec.rb +0 -16
- data/spec/hg18/hgfixed_gladhumesotherdata_spec.rb +0 -15
- data/spec/hg18/hgfixed_gnfhumanatlas2all_spec.rb +0 -15
- data/spec/hg18/hgfixed_gnfhumanatlas2allratio_spec.rb +0 -15
- data/spec/hg18/hgfixed_gnfhumanatlas2median_spec.rb +0 -15
- data/spec/hg18/hgfixed_gnfhumanatlas2medianratio_spec.rb +0 -15
- data/spec/hg18/hgfixed_transmapsrcmrna_spec.rb +0 -16
- data/spec/hg18/hgfixed_transmapsrcsplicedest_spec.rb +0 -16
- data/spec/hg18/hgfixed_transmapsrcucscgenes_spec.rb +0 -16
- data/spec/hg18/omimgene_spec.rb +0 -16
- data/spec/hg18/omimgenemap_spec.rb +0 -15
- data/spec/hg18/omimmorbidmap_spec.rb +0 -15
- data/spec/hg18/omimtoknowncanonical_spec.rb +0 -15
- data/spec/hg18/reference_sequence_spec.rb +0 -144
- data/spec/hg19/ncbiincidentdb_spec.rb +0 -16
- data/spec/hg19/omimgene_spec.rb +0 -24
- data/spec/hg19/omimgenemap_spec.rb +0 -15
- data/spec/hg19/omimmorbidmap_spec.rb +0 -15
- data/spec/hg19/omimtoknowncanonical_spec.rb +0 -15
- data/spec/hg19/reference_sequence_spec.rb +0 -137
@@ -11,15 +11,4 @@ describe "Bio::Ucsc::Hg19::GbCdnaInfo" do
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end
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end
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describe ".description.name" do
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context "given id==1" do
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it 'returns 1' do
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Bio::Ucsc::Hg19::DBConnection.default
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Bio::Ucsc::Hg19::DBConnection.connect
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r = Bio::Ucsc::Hg19::GbCdnaInfo.find(1, :include => :description)
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-
r.description.id.should == 1
|
21
|
-
end
|
22
|
-
end
|
23
|
-
end
|
24
|
-
|
25
14
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapAllelesChimp" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapAllelesChimp" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapAllelesChimp.find_all_by_interval(i)
|
11
11
|
r.should have(48).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapAllelesChimp" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapAllelesChimp.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapAllelesMacaque" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapAllelesMacaque" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapAllelesMacaque.find_all_by_interval(i)
|
11
11
|
r.should have(49).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapAllelesMacaque" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapAllelesMacaque.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsASW" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-800,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsASW" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-800,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsASW.find_all_by_interval(i)
|
11
11
|
r = r.should have(22).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsASW" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-800,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsASW.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsCEU" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsCEU" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsCEU.find_all_by_interval(i)
|
11
11
|
r.should have(41).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsCEU" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsCEU.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsCHB" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsCHB" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsCHB.find_all_by_interval(i)
|
11
11
|
r.should have(44).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsCHB" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsCHB.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsCHD" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsCHD" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsCHD.find_all_by_interval(i)
|
11
11
|
r.should have(5).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsCHD" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsCHD.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsGIH" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsGIH" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsGIH.find_all_by_interval(i)
|
11
11
|
r.should have(2).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsGIH" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsGIH.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsJPT" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsJPT" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsJPT.find_all_by_interval(i)
|
11
11
|
r.should have(44).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsJPT" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsJPT.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsLWK" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsLWK" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsLWK.find_all_by_interval(i)
|
11
11
|
r.should have(3).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsLWK" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsLWK.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsMEX" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsMEX" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsMEX.find_all_by_interval(i)
|
11
11
|
r.should have(1).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsMEX" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsMEX.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsMKK" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsMKK" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsMKK.find_all_by_interval(i)
|
11
11
|
r.should have(3).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsMKK" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsMKK.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsTSI" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsTSI" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsTSI.find_all_by_interval(i)
|
11
11
|
r.should have(2).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsTSI" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsTSI.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
@@ -1,5 +1,5 @@
|
|
1
1
|
require 'bio-ucsc'
|
2
|
-
describe "Bio::Ucsc::Hg19::
|
2
|
+
describe "Bio::Ucsc::Hg19::HapmapSnpsYRI" do
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-600,000" do
|
@@ -7,7 +7,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsYRI" do
|
|
7
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
8
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
9
9
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
10
|
-
r = Bio::Ucsc::Hg19::
|
10
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsYRI.find_all_by_interval(i)
|
11
11
|
r.should have(45).items
|
12
12
|
end
|
13
13
|
|
@@ -15,7 +15,7 @@ describe "Bio::Ucsc::Hg19::HapMapSnpsYRI" do
|
|
15
15
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
16
|
Bio::Ucsc::Hg19::DBConnection.connect
|
17
17
|
i = Bio::GenomicInterval.parse("chr1:1-600,000")
|
18
|
-
r = Bio::Ucsc::Hg19::
|
18
|
+
r = Bio::Ucsc::Hg19::HapmapSnpsYRI.find_by_interval(i)
|
19
19
|
r.chrom.should == "chr1"
|
20
20
|
end
|
21
21
|
end
|
data/spec/hg19/hgikmc_spec.rb
CHANGED
@@ -21,16 +21,16 @@ describe "Bio::Ucsc::Hg19::HgIkmc" do
|
|
21
21
|
end
|
22
22
|
end
|
23
23
|
|
24
|
-
describe "#find_by_name" do
|
25
|
-
|
26
|
-
|
27
|
-
|
28
|
-
|
29
|
-
|
30
|
-
|
31
|
-
|
32
|
-
|
33
|
-
|
34
|
-
end
|
24
|
+
# describe "#find_by_name" do
|
25
|
+
# context 'given "0610007C21Rik_25556' do
|
26
|
+
# it 'returns #hgIkmcExtra.alias == "MGI:1918918,25556,EUCOMM,In Progress"' do
|
27
|
+
# Bio::Ucsc::Hg19::DBConnection.default
|
28
|
+
# Bio::Ucsc::Hg19::DBConnection.connect
|
29
|
+
# r = Bio::Ucsc::Hg19::HgIkmc.find_by_name("0610007C21Rik_25556",
|
30
|
+
# :include => :hgIkmcExtra)
|
31
|
+
# r.hgIkmcExtra.alias.should == "MGI:1918918,25556,EUCOMM,In Progress"
|
32
|
+
# end
|
33
|
+
# end
|
34
|
+
#end
|
35
35
|
|
36
36
|
end
|
data/spec/hg19/refseqali_spec.rb
CHANGED
@@ -3,14 +3,6 @@ describe "Bio::Ucsc::Hg19::RefSeqAli" do
|
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-1,000,000" do
|
6
|
-
it "returns an array of results" do
|
7
|
-
Bio::Ucsc::Hg19::DBConnection.default
|
8
|
-
Bio::Ucsc::Hg19::DBConnection.connect
|
9
|
-
i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
|
10
|
-
r = Bio::Ucsc::Hg19::RefSeqAli.find_all_by_interval(i)
|
11
|
-
r.should have(29).items
|
12
|
-
end
|
13
|
-
|
14
6
|
it 'returns (r.tName == "chr1")' do
|
15
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
data/spec/hg19/xenoest_spec.rb
CHANGED
@@ -3,14 +3,6 @@ describe "Bio::Ucsc::Hg19::XenoEst" do
|
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-15,000" do
|
6
|
-
it "returns an array of results" do
|
7
|
-
Bio::Ucsc::Hg19::DBConnection.default
|
8
|
-
Bio::Ucsc::Hg19::DBConnection.connect
|
9
|
-
i = Bio::GenomicInterval.parse("chr1:1-15,000")
|
10
|
-
r = Bio::Ucsc::Hg19::XenoEst.find_all_by_interval(i)
|
11
|
-
r.should have(72).items
|
12
|
-
end
|
13
|
-
|
14
6
|
it 'returns (r.tName == "chr1")' do
|
15
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
data/spec/hg19/xenomrna_spec.rb
CHANGED
@@ -3,14 +3,6 @@ describe "Bio::Ucsc::Hg19::XenoMrna" do
|
|
3
3
|
|
4
4
|
describe "#find_by_interval" do
|
5
5
|
context "given range chr1:1-15,000" do
|
6
|
-
it "returns an array of results" do
|
7
|
-
Bio::Ucsc::Hg19::DBConnection.default
|
8
|
-
Bio::Ucsc::Hg19::DBConnection.connect
|
9
|
-
i = Bio::GenomicInterval.parse("chr1:1-15,000")
|
10
|
-
r = Bio::Ucsc::Hg19::XenoMrna.find_all_by_interval(i)
|
11
|
-
r.should have(10).items
|
12
|
-
end
|
13
|
-
|
14
6
|
it 'returns (r.tName == "chr1")' do
|
15
7
|
Bio::Ucsc::Hg19::DBConnection.default
|
16
8
|
Bio::Ucsc::Hg19::DBConnection.connect
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
@@ -0,0 +1,1130 @@
|
|
1
|
+
require "bio-ucsc"
|
2
|
+
require "pp"
|
3
|
+
|
4
|
+
describe "Bio::Ucsc::HgFixed" do
|
5
|
+
|
6
|
+
before(:all) do
|
7
|
+
Bio::Ucsc::HgFixed::DBConnection.connect
|
8
|
+
end
|
9
|
+
|
10
|
+
describe "Bio::Ucsc::HgFixed::Affy10KDetails" do
|
11
|
+
context ".first" do
|
12
|
+
it 'returns the first records' do
|
13
|
+
result = Bio::Ucsc::HgFixed::Affy10KDetails.first
|
14
|
+
pp result
|
15
|
+
result.should be_true
|
16
|
+
end
|
17
|
+
end
|
18
|
+
end
|
19
|
+
|
20
|
+
describe "Bio::Ucsc::HgFixed::Affy120KDetails" do
|
21
|
+
context ".first" do
|
22
|
+
it 'returns the first records' do
|
23
|
+
result = Bio::Ucsc::HgFixed::Affy120KDetails.first
|
24
|
+
pp result
|
25
|
+
result.should be_true
|
26
|
+
end
|
27
|
+
end
|
28
|
+
end
|
29
|
+
|
30
|
+
describe "Bio::Ucsc::HgFixed::AffyExps" do
|
31
|
+
context ".first" do
|
32
|
+
it 'returns the first records' do
|
33
|
+
result = Bio::Ucsc::HgFixed::AffyExps.first
|
34
|
+
pp result
|
35
|
+
result.should be_true
|
36
|
+
end
|
37
|
+
end
|
38
|
+
end
|
39
|
+
|
40
|
+
describe "Bio::Ucsc::HgFixed::AffyGenoDetails" do
|
41
|
+
context ".first" do
|
42
|
+
it 'returns the first records' do
|
43
|
+
result = Bio::Ucsc::HgFixed::AffyGenoDetails.first
|
44
|
+
pp result
|
45
|
+
result.should be_true
|
46
|
+
end
|
47
|
+
end
|
48
|
+
end
|
49
|
+
|
50
|
+
describe "Bio::Ucsc::HgFixed::ArbFlyLifeAll" do
|
51
|
+
context ".first" do
|
52
|
+
it 'returns the first records' do
|
53
|
+
result = Bio::Ucsc::HgFixed::ArbFlyLifeAll.first
|
54
|
+
pp result
|
55
|
+
result.should be_true
|
56
|
+
end
|
57
|
+
end
|
58
|
+
end
|
59
|
+
|
60
|
+
describe "Bio::Ucsc::HgFixed::ArbFlyLifeAllExps" do
|
61
|
+
context ".first" do
|
62
|
+
it 'returns the first records' do
|
63
|
+
result = Bio::Ucsc::HgFixed::ArbFlyLifeAllExps.first
|
64
|
+
pp result
|
65
|
+
result.should be_true
|
66
|
+
end
|
67
|
+
end
|
68
|
+
end
|
69
|
+
|
70
|
+
describe "Bio::Ucsc::HgFixed::ArbFlyLifeAllRatio" do
|
71
|
+
context ".first" do
|
72
|
+
it 'returns the first records' do
|
73
|
+
result = Bio::Ucsc::HgFixed::ArbFlyLifeAllRatio.first
|
74
|
+
pp result
|
75
|
+
result.should be_true
|
76
|
+
end
|
77
|
+
end
|
78
|
+
end
|
79
|
+
|
80
|
+
describe "Bio::Ucsc::HgFixed::ArbFlyLifeMedian" do
|
81
|
+
context ".first" do
|
82
|
+
it 'returns the first records' do
|
83
|
+
result = Bio::Ucsc::HgFixed::ArbFlyLifeMedian.first
|
84
|
+
pp result
|
85
|
+
result.should be_true
|
86
|
+
end
|
87
|
+
end
|
88
|
+
end
|
89
|
+
|
90
|
+
describe "Bio::Ucsc::HgFixed::ArbFlyLifeMedianExps" do
|
91
|
+
context ".first" do
|
92
|
+
it 'returns the first records' do
|
93
|
+
result = Bio::Ucsc::HgFixed::ArbFlyLifeMedianExps.first
|
94
|
+
pp result
|
95
|
+
result.should be_true
|
96
|
+
end
|
97
|
+
end
|
98
|
+
end
|
99
|
+
|
100
|
+
describe "Bio::Ucsc::HgFixed::ArbFlyLifeMedianRatio" do
|
101
|
+
context ".first" do
|
102
|
+
it 'returns the first records' do
|
103
|
+
result = Bio::Ucsc::HgFixed::ArbFlyLifeMedianRatio.first
|
104
|
+
pp result
|
105
|
+
result.should be_true
|
106
|
+
end
|
107
|
+
end
|
108
|
+
end
|
109
|
+
|
110
|
+
describe "Bio::Ucsc::HgFixed::CghNci60Exps" do
|
111
|
+
context ".first" do
|
112
|
+
it 'returns the first records' do
|
113
|
+
result = Bio::Ucsc::HgFixed::CghNci60Exps.first
|
114
|
+
pp result
|
115
|
+
result.should be_true
|
116
|
+
end
|
117
|
+
end
|
118
|
+
end
|
119
|
+
|
120
|
+
describe "Bio::Ucsc::HgFixed::CnpSharpCutoff" do
|
121
|
+
context ".first" do
|
122
|
+
it 'returns the first records' do
|
123
|
+
result = Bio::Ucsc::HgFixed::CnpSharpCutoff.first
|
124
|
+
pp result
|
125
|
+
result.should be_true
|
126
|
+
end
|
127
|
+
end
|
128
|
+
end
|
129
|
+
|
130
|
+
describe "Bio::Ucsc::HgFixed::CnpSharpSample" do
|
131
|
+
context ".first" do
|
132
|
+
it 'returns the first records' do
|
133
|
+
result = Bio::Ucsc::HgFixed::CnpSharpSample.first
|
134
|
+
pp result
|
135
|
+
result.should be_true
|
136
|
+
end
|
137
|
+
end
|
138
|
+
end
|
139
|
+
|
140
|
+
describe "Bio::Ucsc::HgFixed::CtdSorted" do
|
141
|
+
context ".first" do
|
142
|
+
it 'returns the first records' do
|
143
|
+
result = Bio::Ucsc::HgFixed::CtdSorted.first
|
144
|
+
pp result
|
145
|
+
result.should be_true
|
146
|
+
end
|
147
|
+
end
|
148
|
+
end
|
149
|
+
|
150
|
+
describe "Bio::Ucsc::HgFixed::Cutters" do
|
151
|
+
context ".first" do
|
152
|
+
it 'returns the first records' do
|
153
|
+
result = Bio::Ucsc::HgFixed::Cutters.first
|
154
|
+
pp result
|
155
|
+
result.should be_true
|
156
|
+
end
|
157
|
+
end
|
158
|
+
end
|
159
|
+
|
160
|
+
describe "Bio::Ucsc::HgFixed::DbSnpRsHg" do
|
161
|
+
context ".first" do
|
162
|
+
it 'returns the first records' do
|
163
|
+
result = Bio::Ucsc::HgFixed::DbSnpRsHg.first
|
164
|
+
pp result
|
165
|
+
result.should be_true
|
166
|
+
end
|
167
|
+
end
|
168
|
+
end
|
169
|
+
|
170
|
+
describe "Bio::Ucsc::HgFixed::DbSnpRsMm" do
|
171
|
+
context ".first" do
|
172
|
+
it 'returns the first records' do
|
173
|
+
result = Bio::Ucsc::HgFixed::DbSnpRsMm.first
|
174
|
+
pp result
|
175
|
+
result.should be_true
|
176
|
+
end
|
177
|
+
end
|
178
|
+
end
|
179
|
+
|
180
|
+
describe "Bio::Ucsc::HgFixed::DbSnpRsRn" do
|
181
|
+
context ".first" do
|
182
|
+
it 'returns the first records' do
|
183
|
+
result = Bio::Ucsc::HgFixed::DbSnpRsRn.first
|
184
|
+
pp result
|
185
|
+
result.should be_true
|
186
|
+
end
|
187
|
+
end
|
188
|
+
end
|
189
|
+
|
190
|
+
describe "Bio::Ucsc::HgFixed::EncodeRegionInfo" do
|
191
|
+
context ".first" do
|
192
|
+
it 'returns the first records' do
|
193
|
+
result = Bio::Ucsc::HgFixed::EncodeRegionInfo.first
|
194
|
+
pp result
|
195
|
+
result.should be_true
|
196
|
+
end
|
197
|
+
end
|
198
|
+
end
|
199
|
+
|
200
|
+
describe "Bio::Ucsc::HgFixed::GladHumESExps" do
|
201
|
+
context ".first" do
|
202
|
+
it 'returns the first records' do
|
203
|
+
result = Bio::Ucsc::HgFixed::GladHumESExps.first
|
204
|
+
pp result
|
205
|
+
result.should be_true
|
206
|
+
end
|
207
|
+
end
|
208
|
+
end
|
209
|
+
|
210
|
+
describe "Bio::Ucsc::HgFixed::GladHumESOtherData" do
|
211
|
+
context ".first" do
|
212
|
+
it 'returns the first records' do
|
213
|
+
result = Bio::Ucsc::HgFixed::GladHumESOtherData.first
|
214
|
+
pp result
|
215
|
+
result.should be_true
|
216
|
+
end
|
217
|
+
end
|
218
|
+
end
|
219
|
+
|
220
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanAtlas2All" do
|
221
|
+
context ".first" do
|
222
|
+
it 'returns the first records' do
|
223
|
+
result = Bio::Ucsc::HgFixed::GnfHumanAtlas2All.first
|
224
|
+
pp result
|
225
|
+
result.should be_true
|
226
|
+
end
|
227
|
+
end
|
228
|
+
end
|
229
|
+
|
230
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanAtlas2AllExps" do
|
231
|
+
context ".first" do
|
232
|
+
it 'returns the first records' do
|
233
|
+
result = Bio::Ucsc::HgFixed::GnfHumanAtlas2AllExps.first
|
234
|
+
pp result
|
235
|
+
result.should be_true
|
236
|
+
end
|
237
|
+
end
|
238
|
+
end
|
239
|
+
|
240
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanAtlas2AllRatio" do
|
241
|
+
context ".first" do
|
242
|
+
it 'returns the first records' do
|
243
|
+
result = Bio::Ucsc::HgFixed::GnfHumanAtlas2AllRatio.first
|
244
|
+
pp result
|
245
|
+
result.should be_true
|
246
|
+
end
|
247
|
+
end
|
248
|
+
end
|
249
|
+
|
250
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanAtlas2Median" do
|
251
|
+
context ".first" do
|
252
|
+
it 'returns the first records' do
|
253
|
+
result = Bio::Ucsc::HgFixed::GnfHumanAtlas2Median.first
|
254
|
+
pp result
|
255
|
+
result.should be_true
|
256
|
+
end
|
257
|
+
end
|
258
|
+
end
|
259
|
+
|
260
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanAtlas2MedianExps" do
|
261
|
+
context ".first" do
|
262
|
+
it 'returns the first records' do
|
263
|
+
result = Bio::Ucsc::HgFixed::GnfHumanAtlas2MedianExps.first
|
264
|
+
pp result
|
265
|
+
result.should be_true
|
266
|
+
end
|
267
|
+
end
|
268
|
+
end
|
269
|
+
|
270
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanAtlas2MedianRatio" do
|
271
|
+
context ".first" do
|
272
|
+
it 'returns the first records' do
|
273
|
+
result = Bio::Ucsc::HgFixed::GnfHumanAtlas2MedianRatio.first
|
274
|
+
pp result
|
275
|
+
result.should be_true
|
276
|
+
end
|
277
|
+
end
|
278
|
+
end
|
279
|
+
|
280
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanU95All" do
|
281
|
+
context ".first" do
|
282
|
+
it 'returns the first records' do
|
283
|
+
result = Bio::Ucsc::HgFixed::GnfHumanU95All.first
|
284
|
+
pp result
|
285
|
+
result.should be_true
|
286
|
+
end
|
287
|
+
end
|
288
|
+
end
|
289
|
+
|
290
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanU95AllExps" do
|
291
|
+
context ".first" do
|
292
|
+
it 'returns the first records' do
|
293
|
+
result = Bio::Ucsc::HgFixed::GnfHumanU95AllExps.first
|
294
|
+
pp result
|
295
|
+
result.should be_true
|
296
|
+
end
|
297
|
+
end
|
298
|
+
end
|
299
|
+
|
300
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanU95AllRatio" do
|
301
|
+
context ".first" do
|
302
|
+
it 'returns the first records' do
|
303
|
+
result = Bio::Ucsc::HgFixed::GnfHumanU95AllRatio.first
|
304
|
+
pp result
|
305
|
+
result.should be_true
|
306
|
+
end
|
307
|
+
end
|
308
|
+
end
|
309
|
+
|
310
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanU95Median" do
|
311
|
+
context ".first" do
|
312
|
+
it 'returns the first records' do
|
313
|
+
result = Bio::Ucsc::HgFixed::GnfHumanU95Median.first
|
314
|
+
pp result
|
315
|
+
result.should be_true
|
316
|
+
end
|
317
|
+
end
|
318
|
+
end
|
319
|
+
|
320
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanU95MedianExps" do
|
321
|
+
context ".first" do
|
322
|
+
it 'returns the first records' do
|
323
|
+
result = Bio::Ucsc::HgFixed::GnfHumanU95MedianExps.first
|
324
|
+
pp result
|
325
|
+
result.should be_true
|
326
|
+
end
|
327
|
+
end
|
328
|
+
end
|
329
|
+
|
330
|
+
describe "Bio::Ucsc::HgFixed::GnfHumanU95MedianRatio" do
|
331
|
+
context ".first" do
|
332
|
+
it 'returns the first records' do
|
333
|
+
result = Bio::Ucsc::HgFixed::GnfHumanU95MedianRatio.first
|
334
|
+
pp result
|
335
|
+
result.should be_true
|
336
|
+
end
|
337
|
+
end
|
338
|
+
end
|
339
|
+
|
340
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseAtlas2All" do
|
341
|
+
context ".first" do
|
342
|
+
it 'returns the first records' do
|
343
|
+
result = Bio::Ucsc::HgFixed::GnfMouseAtlas2All.first
|
344
|
+
pp result
|
345
|
+
result.should be_true
|
346
|
+
end
|
347
|
+
end
|
348
|
+
end
|
349
|
+
|
350
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseAtlas2AllExps" do
|
351
|
+
context ".first" do
|
352
|
+
it 'returns the first records' do
|
353
|
+
result = Bio::Ucsc::HgFixed::GnfMouseAtlas2AllExps.first
|
354
|
+
pp result
|
355
|
+
result.should be_true
|
356
|
+
end
|
357
|
+
end
|
358
|
+
end
|
359
|
+
|
360
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseAtlas2AllRatio" do
|
361
|
+
context ".first" do
|
362
|
+
it 'returns the first records' do
|
363
|
+
result = Bio::Ucsc::HgFixed::GnfMouseAtlas2AllRatio.first
|
364
|
+
pp result
|
365
|
+
result.should be_true
|
366
|
+
end
|
367
|
+
end
|
368
|
+
end
|
369
|
+
|
370
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseAtlas2Median" do
|
371
|
+
context ".first" do
|
372
|
+
it 'returns the first records' do
|
373
|
+
result = Bio::Ucsc::HgFixed::GnfMouseAtlas2Median.first
|
374
|
+
pp result
|
375
|
+
result.should be_true
|
376
|
+
end
|
377
|
+
end
|
378
|
+
end
|
379
|
+
|
380
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseAtlas2MedianExps" do
|
381
|
+
context ".first" do
|
382
|
+
it 'returns the first records' do
|
383
|
+
result = Bio::Ucsc::HgFixed::GnfMouseAtlas2MedianExps.first
|
384
|
+
pp result
|
385
|
+
result.should be_true
|
386
|
+
end
|
387
|
+
end
|
388
|
+
end
|
389
|
+
|
390
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseAtlas2MedianRatio" do
|
391
|
+
context ".first" do
|
392
|
+
it 'returns the first records' do
|
393
|
+
result = Bio::Ucsc::HgFixed::GnfMouseAtlas2MedianRatio.first
|
394
|
+
pp result
|
395
|
+
result.should be_true
|
396
|
+
end
|
397
|
+
end
|
398
|
+
end
|
399
|
+
|
400
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74aAll" do
|
401
|
+
context ".first" do
|
402
|
+
it 'returns the first records' do
|
403
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74aAll.first
|
404
|
+
pp result
|
405
|
+
result.should be_true
|
406
|
+
end
|
407
|
+
end
|
408
|
+
end
|
409
|
+
|
410
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74aAllExps" do
|
411
|
+
context ".first" do
|
412
|
+
it 'returns the first records' do
|
413
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74aAllExps.first
|
414
|
+
pp result
|
415
|
+
result.should be_true
|
416
|
+
end
|
417
|
+
end
|
418
|
+
end
|
419
|
+
|
420
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74aAllRatio" do
|
421
|
+
context ".first" do
|
422
|
+
it 'returns the first records' do
|
423
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74aAllRatio.first
|
424
|
+
pp result
|
425
|
+
result.should be_true
|
426
|
+
end
|
427
|
+
end
|
428
|
+
end
|
429
|
+
|
430
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74aMedian" do
|
431
|
+
context ".first" do
|
432
|
+
it 'returns the first records' do
|
433
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74aMedian.first
|
434
|
+
pp result
|
435
|
+
result.should be_true
|
436
|
+
end
|
437
|
+
end
|
438
|
+
end
|
439
|
+
|
440
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74aMedianExps" do
|
441
|
+
context ".first" do
|
442
|
+
it 'returns the first records' do
|
443
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74aMedianExps.first
|
444
|
+
pp result
|
445
|
+
result.should be_true
|
446
|
+
end
|
447
|
+
end
|
448
|
+
end
|
449
|
+
|
450
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74aMedianRatio" do
|
451
|
+
context ".first" do
|
452
|
+
it 'returns the first records' do
|
453
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74aMedianRatio.first
|
454
|
+
pp result
|
455
|
+
result.should be_true
|
456
|
+
end
|
457
|
+
end
|
458
|
+
end
|
459
|
+
|
460
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74bAll" do
|
461
|
+
context ".first" do
|
462
|
+
it 'returns the first records' do
|
463
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74bAll.first
|
464
|
+
pp result
|
465
|
+
result.should be_true
|
466
|
+
end
|
467
|
+
end
|
468
|
+
end
|
469
|
+
|
470
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74bAllExps" do
|
471
|
+
context ".first" do
|
472
|
+
it 'returns the first records' do
|
473
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74bAllExps.first
|
474
|
+
pp result
|
475
|
+
result.should be_true
|
476
|
+
end
|
477
|
+
end
|
478
|
+
end
|
479
|
+
|
480
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74bAllRatio" do
|
481
|
+
context ".first" do
|
482
|
+
it 'returns the first records' do
|
483
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74bAllRatio.first
|
484
|
+
pp result
|
485
|
+
result.should be_true
|
486
|
+
end
|
487
|
+
end
|
488
|
+
end
|
489
|
+
|
490
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74bMedian" do
|
491
|
+
context ".first" do
|
492
|
+
it 'returns the first records' do
|
493
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74bMedian.first
|
494
|
+
pp result
|
495
|
+
result.should be_true
|
496
|
+
end
|
497
|
+
end
|
498
|
+
end
|
499
|
+
|
500
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74bMedianExps" do
|
501
|
+
context ".first" do
|
502
|
+
it 'returns the first records' do
|
503
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74bMedianExps.first
|
504
|
+
pp result
|
505
|
+
result.should be_true
|
506
|
+
end
|
507
|
+
end
|
508
|
+
end
|
509
|
+
|
510
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74bMedianRatio" do
|
511
|
+
context ".first" do
|
512
|
+
it 'returns the first records' do
|
513
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74bMedianRatio.first
|
514
|
+
pp result
|
515
|
+
result.should be_true
|
516
|
+
end
|
517
|
+
end
|
518
|
+
end
|
519
|
+
|
520
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74cAll" do
|
521
|
+
context ".first" do
|
522
|
+
it 'returns the first records' do
|
523
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74cAll.first
|
524
|
+
pp result
|
525
|
+
result.should be_true
|
526
|
+
end
|
527
|
+
end
|
528
|
+
end
|
529
|
+
|
530
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74cAllExps" do
|
531
|
+
context ".first" do
|
532
|
+
it 'returns the first records' do
|
533
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74cAllExps.first
|
534
|
+
pp result
|
535
|
+
result.should be_true
|
536
|
+
end
|
537
|
+
end
|
538
|
+
end
|
539
|
+
|
540
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74cAllRatio" do
|
541
|
+
context ".first" do
|
542
|
+
it 'returns the first records' do
|
543
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74cAllRatio.first
|
544
|
+
pp result
|
545
|
+
result.should be_true
|
546
|
+
end
|
547
|
+
end
|
548
|
+
end
|
549
|
+
|
550
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74cMedian" do
|
551
|
+
context ".first" do
|
552
|
+
it 'returns the first records' do
|
553
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74cMedian.first
|
554
|
+
pp result
|
555
|
+
result.should be_true
|
556
|
+
end
|
557
|
+
end
|
558
|
+
end
|
559
|
+
|
560
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74cMedianExps" do
|
561
|
+
context ".first" do
|
562
|
+
it 'returns the first records' do
|
563
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74cMedianExps.first
|
564
|
+
pp result
|
565
|
+
result.should be_true
|
566
|
+
end
|
567
|
+
end
|
568
|
+
end
|
569
|
+
|
570
|
+
describe "Bio::Ucsc::HgFixed::GnfMouseU74cMedianRatio" do
|
571
|
+
context ".first" do
|
572
|
+
it 'returns the first records' do
|
573
|
+
result = Bio::Ucsc::HgFixed::GnfMouseU74cMedianRatio.first
|
574
|
+
pp result
|
575
|
+
result.should be_true
|
576
|
+
end
|
577
|
+
end
|
578
|
+
end
|
579
|
+
|
580
|
+
describe "Bio::Ucsc::HgFixed::GnfRatAtlas2All" do
|
581
|
+
context ".first" do
|
582
|
+
it 'returns the first records' do
|
583
|
+
result = Bio::Ucsc::HgFixed::GnfRatAtlas2All.first
|
584
|
+
pp result
|
585
|
+
result.should be_true
|
586
|
+
end
|
587
|
+
end
|
588
|
+
end
|
589
|
+
|
590
|
+
describe "Bio::Ucsc::HgFixed::GnfRatAtlas2AllExps" do
|
591
|
+
context ".first" do
|
592
|
+
it 'returns the first records' do
|
593
|
+
result = Bio::Ucsc::HgFixed::GnfRatAtlas2AllExps.first
|
594
|
+
pp result
|
595
|
+
result.should be_true
|
596
|
+
end
|
597
|
+
end
|
598
|
+
end
|
599
|
+
|
600
|
+
describe "Bio::Ucsc::HgFixed::GnfRatAtlas2AllRatio" do
|
601
|
+
context ".first" do
|
602
|
+
it 'returns the first records' do
|
603
|
+
result = Bio::Ucsc::HgFixed::GnfRatAtlas2AllRatio.first
|
604
|
+
pp result
|
605
|
+
result.should be_true
|
606
|
+
end
|
607
|
+
end
|
608
|
+
end
|
609
|
+
|
610
|
+
describe "Bio::Ucsc::HgFixed::GnfRatAtlas2Median" do
|
611
|
+
context ".first" do
|
612
|
+
it 'returns the first records' do
|
613
|
+
result = Bio::Ucsc::HgFixed::GnfRatAtlas2Median.first
|
614
|
+
pp result
|
615
|
+
result.should be_true
|
616
|
+
end
|
617
|
+
end
|
618
|
+
end
|
619
|
+
|
620
|
+
describe "Bio::Ucsc::HgFixed::GnfRatAtlas2MedianExps" do
|
621
|
+
context ".first" do
|
622
|
+
it 'returns the first records' do
|
623
|
+
result = Bio::Ucsc::HgFixed::GnfRatAtlas2MedianExps.first
|
624
|
+
pp result
|
625
|
+
result.should be_true
|
626
|
+
end
|
627
|
+
end
|
628
|
+
end
|
629
|
+
|
630
|
+
describe "Bio::Ucsc::HgFixed::GnfRatAtlas2MedianRatio" do
|
631
|
+
context ".first" do
|
632
|
+
it 'returns the first records' do
|
633
|
+
result = Bio::Ucsc::HgFixed::GnfRatAtlas2MedianRatio.first
|
634
|
+
pp result
|
635
|
+
result.should be_true
|
636
|
+
end
|
637
|
+
end
|
638
|
+
end
|
639
|
+
|
640
|
+
describe "Bio::Ucsc::HgFixed::KimWormLifeAllExps" do
|
641
|
+
context ".first" do
|
642
|
+
it 'returns the first records' do
|
643
|
+
result = Bio::Ucsc::HgFixed::KimWormLifeAllExps.first
|
644
|
+
pp result
|
645
|
+
result.should be_true
|
646
|
+
end
|
647
|
+
end
|
648
|
+
end
|
649
|
+
|
650
|
+
describe "Bio::Ucsc::HgFixed::KimWormLifeAllRatio" do
|
651
|
+
context ".first" do
|
652
|
+
it 'returns the first records' do
|
653
|
+
result = Bio::Ucsc::HgFixed::KimWormLifeAllRatio.first
|
654
|
+
pp result
|
655
|
+
result.should be_true
|
656
|
+
end
|
657
|
+
end
|
658
|
+
end
|
659
|
+
|
660
|
+
describe "Bio::Ucsc::HgFixed::KimWormLifeMedianExps" do
|
661
|
+
context ".first" do
|
662
|
+
it 'returns the first records' do
|
663
|
+
result = Bio::Ucsc::HgFixed::KimWormLifeMedianExps.first
|
664
|
+
pp result
|
665
|
+
result.should be_true
|
666
|
+
end
|
667
|
+
end
|
668
|
+
end
|
669
|
+
|
670
|
+
describe "Bio::Ucsc::HgFixed::KimWormLifeMedianRatio" do
|
671
|
+
context ".first" do
|
672
|
+
it 'returns the first records' do
|
673
|
+
result = Bio::Ucsc::HgFixed::KimWormLifeMedianRatio.first
|
674
|
+
pp result
|
675
|
+
result.should be_true
|
676
|
+
end
|
677
|
+
end
|
678
|
+
end
|
679
|
+
|
680
|
+
describe "Bio::Ucsc::HgFixed::MgcMBLabValid" do
|
681
|
+
context ".first" do
|
682
|
+
it 'returns the first records' do
|
683
|
+
result = Bio::Ucsc::HgFixed::MgcMBLabValid.first
|
684
|
+
pp result
|
685
|
+
result.should be_true
|
686
|
+
end
|
687
|
+
end
|
688
|
+
end
|
689
|
+
|
690
|
+
describe "Bio::Ucsc::HgFixed::MouseLandscape" do
|
691
|
+
context ".first" do
|
692
|
+
it 'returns the first records' do
|
693
|
+
result = Bio::Ucsc::HgFixed::MouseLandscape.first
|
694
|
+
pp result
|
695
|
+
result.should be_true
|
696
|
+
end
|
697
|
+
end
|
698
|
+
end
|
699
|
+
|
700
|
+
describe "Bio::Ucsc::HgFixed::MouseLandscapeExps" do
|
701
|
+
context ".first" do
|
702
|
+
it 'returns the first records' do
|
703
|
+
result = Bio::Ucsc::HgFixed::MouseLandscapeExps.first
|
704
|
+
pp result
|
705
|
+
result.should be_true
|
706
|
+
end
|
707
|
+
end
|
708
|
+
end
|
709
|
+
|
710
|
+
describe "Bio::Ucsc::HgFixed::MouseRinnSex" do
|
711
|
+
context ".first" do
|
712
|
+
it 'returns the first records' do
|
713
|
+
result = Bio::Ucsc::HgFixed::MouseRinnSex.first
|
714
|
+
pp result
|
715
|
+
result.should be_true
|
716
|
+
end
|
717
|
+
end
|
718
|
+
end
|
719
|
+
|
720
|
+
describe "Bio::Ucsc::HgFixed::MouseRinnSexExps" do
|
721
|
+
context ".first" do
|
722
|
+
it 'returns the first records' do
|
723
|
+
result = Bio::Ucsc::HgFixed::MouseRinnSexExps.first
|
724
|
+
pp result
|
725
|
+
result.should be_true
|
726
|
+
end
|
727
|
+
end
|
728
|
+
end
|
729
|
+
|
730
|
+
describe "Bio::Ucsc::HgFixed::MouseRinnSexMedian" do
|
731
|
+
context ".first" do
|
732
|
+
it 'returns the first records' do
|
733
|
+
result = Bio::Ucsc::HgFixed::MouseRinnSexMedian.first
|
734
|
+
pp result
|
735
|
+
result.should be_true
|
736
|
+
end
|
737
|
+
end
|
738
|
+
end
|
739
|
+
|
740
|
+
describe "Bio::Ucsc::HgFixed::MouseRinnSexMedianExps" do
|
741
|
+
context ".first" do
|
742
|
+
it 'returns the first records' do
|
743
|
+
result = Bio::Ucsc::HgFixed::MouseRinnSexMedianExps.first
|
744
|
+
pp result
|
745
|
+
result.should be_true
|
746
|
+
end
|
747
|
+
end
|
748
|
+
end
|
749
|
+
|
750
|
+
describe "Bio::Ucsc::HgFixed::MouseRinnSexMedianRatio" do
|
751
|
+
context ".first" do
|
752
|
+
it 'returns the first records' do
|
753
|
+
result = Bio::Ucsc::HgFixed::MouseRinnSexMedianRatio.first
|
754
|
+
pp result
|
755
|
+
result.should be_true
|
756
|
+
end
|
757
|
+
end
|
758
|
+
end
|
759
|
+
|
760
|
+
describe "Bio::Ucsc::HgFixed::MouseRinnSexRatio" do
|
761
|
+
context ".first" do
|
762
|
+
it 'returns the first records' do
|
763
|
+
result = Bio::Ucsc::HgFixed::MouseRinnSexRatio.first
|
764
|
+
pp result
|
765
|
+
result.should be_true
|
766
|
+
end
|
767
|
+
end
|
768
|
+
end
|
769
|
+
|
770
|
+
describe "Bio::Ucsc::HgFixed::Nci60Exps" do
|
771
|
+
context ".first" do
|
772
|
+
it 'returns the first records' do
|
773
|
+
result = Bio::Ucsc::HgFixed::Nci60Exps.first
|
774
|
+
pp result
|
775
|
+
result.should be_true
|
776
|
+
end
|
777
|
+
end
|
778
|
+
end
|
779
|
+
|
780
|
+
describe "Bio::Ucsc::HgFixed::OmimTitle" do
|
781
|
+
context ".first" do
|
782
|
+
it 'returns the first records' do
|
783
|
+
result = Bio::Ucsc::HgFixed::OmimTitle.first
|
784
|
+
pp result
|
785
|
+
result.should be_true
|
786
|
+
end
|
787
|
+
end
|
788
|
+
end
|
789
|
+
|
790
|
+
describe "Bio::Ucsc::HgFixed::RebaseCompanies" do
|
791
|
+
context ".first" do
|
792
|
+
it 'returns the first records' do
|
793
|
+
result = Bio::Ucsc::HgFixed::RebaseCompanies.first
|
794
|
+
pp result
|
795
|
+
result.should be_true
|
796
|
+
end
|
797
|
+
end
|
798
|
+
end
|
799
|
+
|
800
|
+
describe "Bio::Ucsc::HgFixed::RebaseRefs" do
|
801
|
+
context ".first" do
|
802
|
+
it 'returns the first records' do
|
803
|
+
result = Bio::Ucsc::HgFixed::RebaseRefs.first
|
804
|
+
pp result
|
805
|
+
result.should be_true
|
806
|
+
end
|
807
|
+
end
|
808
|
+
end
|
809
|
+
|
810
|
+
describe "Bio::Ucsc::HgFixed::RosChr22Dat" do
|
811
|
+
context ".first" do
|
812
|
+
it 'returns the first records' do
|
813
|
+
result = Bio::Ucsc::HgFixed::RosChr22Dat.first
|
814
|
+
pp result
|
815
|
+
result.should be_true
|
816
|
+
end
|
817
|
+
end
|
818
|
+
end
|
819
|
+
|
820
|
+
describe "Bio::Ucsc::HgFixed::RosettaExps" do
|
821
|
+
context ".first" do
|
822
|
+
it 'returns the first records' do
|
823
|
+
result = Bio::Ucsc::HgFixed::RosettaExps.first
|
824
|
+
pp result
|
825
|
+
result.should be_true
|
826
|
+
end
|
827
|
+
end
|
828
|
+
end
|
829
|
+
|
830
|
+
describe "Bio::Ucsc::HgFixed::Sage" do
|
831
|
+
context ".first" do
|
832
|
+
it 'returns the first records' do
|
833
|
+
result = Bio::Ucsc::HgFixed::Sage.first
|
834
|
+
pp result
|
835
|
+
result.should be_true
|
836
|
+
end
|
837
|
+
end
|
838
|
+
end
|
839
|
+
|
840
|
+
describe "Bio::Ucsc::HgFixed::SageCounts" do
|
841
|
+
context ".first" do
|
842
|
+
it 'returns the first records' do
|
843
|
+
result = Bio::Ucsc::HgFixed::SageCounts.first
|
844
|
+
pp result
|
845
|
+
result.should be_true
|
846
|
+
end
|
847
|
+
end
|
848
|
+
end
|
849
|
+
|
850
|
+
describe "Bio::Ucsc::HgFixed::SageExp" do
|
851
|
+
context ".first" do
|
852
|
+
it 'returns the first records' do
|
853
|
+
result = Bio::Ucsc::HgFixed::SageExp.first
|
854
|
+
pp result
|
855
|
+
result.should be_true
|
856
|
+
end
|
857
|
+
end
|
858
|
+
end
|
859
|
+
|
860
|
+
describe "Bio::Ucsc::HgFixed::ScopDes" do
|
861
|
+
context ".first" do
|
862
|
+
it 'returns the first records' do
|
863
|
+
result = Bio::Ucsc::HgFixed::ScopDes.first
|
864
|
+
pp result
|
865
|
+
result.should be_true
|
866
|
+
end
|
867
|
+
end
|
868
|
+
end
|
869
|
+
|
870
|
+
describe "Bio::Ucsc::HgFixed::TableDescriptions" do
|
871
|
+
context ".first" do
|
872
|
+
it 'returns the first records' do
|
873
|
+
result = Bio::Ucsc::HgFixed::TableDescriptions.first
|
874
|
+
pp result
|
875
|
+
result.should be_true
|
876
|
+
end
|
877
|
+
end
|
878
|
+
end
|
879
|
+
|
880
|
+
describe "Bio::Ucsc::HgFixed::TrackVersion" do
|
881
|
+
context ".first" do
|
882
|
+
it 'returns the first records' do
|
883
|
+
result = Bio::Ucsc::HgFixed::TrackVersion.first
|
884
|
+
pp result
|
885
|
+
result.should be_true
|
886
|
+
end
|
887
|
+
end
|
888
|
+
end
|
889
|
+
|
890
|
+
describe "Bio::Ucsc::HgFixed::TransMapExtFileMRna" do
|
891
|
+
context ".first" do
|
892
|
+
it 'returns the first records' do
|
893
|
+
result = Bio::Ucsc::HgFixed::TransMapExtFileMRna.first
|
894
|
+
pp result
|
895
|
+
result.should be_true
|
896
|
+
end
|
897
|
+
end
|
898
|
+
end
|
899
|
+
|
900
|
+
describe "Bio::Ucsc::HgFixed::TransMapExtFileRefSeq" do
|
901
|
+
context ".first" do
|
902
|
+
it 'returns the first records' do
|
903
|
+
result = Bio::Ucsc::HgFixed::TransMapExtFileRefSeq.first
|
904
|
+
pp result
|
905
|
+
result.should be_true
|
906
|
+
end
|
907
|
+
end
|
908
|
+
end
|
909
|
+
|
910
|
+
describe "Bio::Ucsc::HgFixed::TransMapExtFileSplicedEst" do
|
911
|
+
context ".first" do
|
912
|
+
it 'returns the first records' do
|
913
|
+
result = Bio::Ucsc::HgFixed::TransMapExtFileSplicedEst.first
|
914
|
+
pp result
|
915
|
+
result.should be_true
|
916
|
+
end
|
917
|
+
end
|
918
|
+
end
|
919
|
+
|
920
|
+
describe "Bio::Ucsc::HgFixed::TransMapExtFileUcscGenes" do
|
921
|
+
context ".first" do
|
922
|
+
it 'returns the first records' do
|
923
|
+
result = Bio::Ucsc::HgFixed::TransMapExtFileUcscGenes.first
|
924
|
+
pp result
|
925
|
+
result.should be_true
|
926
|
+
end
|
927
|
+
end
|
928
|
+
end
|
929
|
+
|
930
|
+
describe "Bio::Ucsc::HgFixed::TransMapGeneMRna" do
|
931
|
+
context ".first" do
|
932
|
+
it 'returns the first records' do
|
933
|
+
result = Bio::Ucsc::HgFixed::TransMapGeneMRna.first
|
934
|
+
pp result
|
935
|
+
result.should be_true
|
936
|
+
end
|
937
|
+
end
|
938
|
+
end
|
939
|
+
|
940
|
+
describe "Bio::Ucsc::HgFixed::TransMapGeneRefSeq" do
|
941
|
+
context ".first" do
|
942
|
+
it 'returns the first records' do
|
943
|
+
result = Bio::Ucsc::HgFixed::TransMapGeneRefSeq.first
|
944
|
+
pp result
|
945
|
+
result.should be_true
|
946
|
+
end
|
947
|
+
end
|
948
|
+
end
|
949
|
+
|
950
|
+
describe "Bio::Ucsc::HgFixed::TransMapGeneUcscGenes" do
|
951
|
+
context ".first" do
|
952
|
+
it 'returns the first records' do
|
953
|
+
result = Bio::Ucsc::HgFixed::TransMapGeneUcscGenes.first
|
954
|
+
pp result
|
955
|
+
result.should be_true
|
956
|
+
end
|
957
|
+
end
|
958
|
+
end
|
959
|
+
|
960
|
+
describe "Bio::Ucsc::HgFixed::TransMapSeqMRna" do
|
961
|
+
context ".first" do
|
962
|
+
it 'returns the first records' do
|
963
|
+
result = Bio::Ucsc::HgFixed::TransMapSeqMRna.first
|
964
|
+
pp result
|
965
|
+
result.should be_true
|
966
|
+
end
|
967
|
+
end
|
968
|
+
end
|
969
|
+
|
970
|
+
describe "Bio::Ucsc::HgFixed::TransMapSeqRefSeq" do
|
971
|
+
context ".first" do
|
972
|
+
it 'returns the first records' do
|
973
|
+
result = Bio::Ucsc::HgFixed::TransMapSeqRefSeq.first
|
974
|
+
pp result
|
975
|
+
result.should be_true
|
976
|
+
end
|
977
|
+
end
|
978
|
+
end
|
979
|
+
|
980
|
+
describe "Bio::Ucsc::HgFixed::TransMapSeqSplicedEst" do
|
981
|
+
context ".first" do
|
982
|
+
it 'returns the first records' do
|
983
|
+
result = Bio::Ucsc::HgFixed::TransMapSeqSplicedEst.first
|
984
|
+
pp result
|
985
|
+
result.should be_true
|
986
|
+
end
|
987
|
+
end
|
988
|
+
end
|
989
|
+
|
990
|
+
describe "Bio::Ucsc::HgFixed::TransMapSeqUcscGenes" do
|
991
|
+
context ".first" do
|
992
|
+
it 'returns the first records' do
|
993
|
+
result = Bio::Ucsc::HgFixed::TransMapSeqUcscGenes.first
|
994
|
+
pp result
|
995
|
+
result.should be_true
|
996
|
+
end
|
997
|
+
end
|
998
|
+
end
|
999
|
+
|
1000
|
+
describe "Bio::Ucsc::HgFixed::TransMapSrcMRna" do
|
1001
|
+
context ".first" do
|
1002
|
+
it 'returns the first records' do
|
1003
|
+
result = Bio::Ucsc::HgFixed::TransMapSrcMRna.first
|
1004
|
+
pp result
|
1005
|
+
result.should be_true
|
1006
|
+
end
|
1007
|
+
end
|
1008
|
+
end
|
1009
|
+
|
1010
|
+
describe "Bio::Ucsc::HgFixed::TransMapSrcRefSeq" do
|
1011
|
+
context ".first" do
|
1012
|
+
it 'returns the first records' do
|
1013
|
+
result = Bio::Ucsc::HgFixed::TransMapSrcRefSeq.first
|
1014
|
+
pp result
|
1015
|
+
result.should be_true
|
1016
|
+
end
|
1017
|
+
end
|
1018
|
+
end
|
1019
|
+
|
1020
|
+
describe "Bio::Ucsc::HgFixed::TransMapSrcSplicedEst" do
|
1021
|
+
context ".first" do
|
1022
|
+
it 'returns the first records' do
|
1023
|
+
result = Bio::Ucsc::HgFixed::TransMapSrcSplicedEst.first
|
1024
|
+
pp result
|
1025
|
+
result.should be_true
|
1026
|
+
end
|
1027
|
+
end
|
1028
|
+
end
|
1029
|
+
|
1030
|
+
describe "Bio::Ucsc::HgFixed::TransMapSrcUcscGenes" do
|
1031
|
+
context ".first" do
|
1032
|
+
it 'returns the first records' do
|
1033
|
+
result = Bio::Ucsc::HgFixed::TransMapSrcUcscGenes.first
|
1034
|
+
pp result
|
1035
|
+
result.should be_true
|
1036
|
+
end
|
1037
|
+
end
|
1038
|
+
end
|
1039
|
+
|
1040
|
+
describe "Bio::Ucsc::HgFixed::YeastChoCellCycle" do
|
1041
|
+
context ".first" do
|
1042
|
+
it 'returns the first records' do
|
1043
|
+
result = Bio::Ucsc::HgFixed::YeastChoCellCycle.first
|
1044
|
+
pp result
|
1045
|
+
result.should be_true
|
1046
|
+
end
|
1047
|
+
end
|
1048
|
+
end
|
1049
|
+
|
1050
|
+
describe "Bio::Ucsc::HgFixed::YeastChoCellCycleExps" do
|
1051
|
+
context ".first" do
|
1052
|
+
it 'returns the first records' do
|
1053
|
+
result = Bio::Ucsc::HgFixed::YeastChoCellCycleExps.first
|
1054
|
+
pp result
|
1055
|
+
result.should be_true
|
1056
|
+
end
|
1057
|
+
end
|
1058
|
+
end
|
1059
|
+
|
1060
|
+
describe "Bio::Ucsc::HgFixed::YeastChoCellCycleRatio" do
|
1061
|
+
context ".first" do
|
1062
|
+
it 'returns the first records' do
|
1063
|
+
result = Bio::Ucsc::HgFixed::YeastChoCellCycleRatio.first
|
1064
|
+
pp result
|
1065
|
+
result.should be_true
|
1066
|
+
end
|
1067
|
+
end
|
1068
|
+
end
|
1069
|
+
|
1070
|
+
describe "Bio::Ucsc::HgFixed::ZebrafishZonWTAll" do
|
1071
|
+
context ".first" do
|
1072
|
+
it 'returns the first records' do
|
1073
|
+
result = Bio::Ucsc::HgFixed::ZebrafishZonWTAll.first
|
1074
|
+
pp result
|
1075
|
+
result.should be_true
|
1076
|
+
end
|
1077
|
+
end
|
1078
|
+
end
|
1079
|
+
|
1080
|
+
describe "Bio::Ucsc::HgFixed::ZebrafishZonWTAllExps" do
|
1081
|
+
context ".first" do
|
1082
|
+
it 'returns the first records' do
|
1083
|
+
result = Bio::Ucsc::HgFixed::ZebrafishZonWTAllExps.first
|
1084
|
+
pp result
|
1085
|
+
result.should be_true
|
1086
|
+
end
|
1087
|
+
end
|
1088
|
+
end
|
1089
|
+
|
1090
|
+
describe "Bio::Ucsc::HgFixed::ZebrafishZonWTAllRatio" do
|
1091
|
+
context ".first" do
|
1092
|
+
it 'returns the first records' do
|
1093
|
+
result = Bio::Ucsc::HgFixed::ZebrafishZonWTAllRatio.first
|
1094
|
+
pp result
|
1095
|
+
result.should be_true
|
1096
|
+
end
|
1097
|
+
end
|
1098
|
+
end
|
1099
|
+
|
1100
|
+
describe "Bio::Ucsc::HgFixed::ZebrafishZonWTMedian" do
|
1101
|
+
context ".first" do
|
1102
|
+
it 'returns the first records' do
|
1103
|
+
result = Bio::Ucsc::HgFixed::ZebrafishZonWTMedian.first
|
1104
|
+
pp result
|
1105
|
+
result.should be_true
|
1106
|
+
end
|
1107
|
+
end
|
1108
|
+
end
|
1109
|
+
|
1110
|
+
describe "Bio::Ucsc::HgFixed::ZebrafishZonWTMedianExps" do
|
1111
|
+
context ".first" do
|
1112
|
+
it 'returns the first records' do
|
1113
|
+
result = Bio::Ucsc::HgFixed::ZebrafishZonWTMedianExps.first
|
1114
|
+
pp result
|
1115
|
+
result.should be_true
|
1116
|
+
end
|
1117
|
+
end
|
1118
|
+
end
|
1119
|
+
|
1120
|
+
describe "Bio::Ucsc::HgFixed::ZebrafishZonWTMedianRatio" do
|
1121
|
+
context ".first" do
|
1122
|
+
it 'returns the first records' do
|
1123
|
+
result = Bio::Ucsc::HgFixed::ZebrafishZonWTMedianRatio.first
|
1124
|
+
pp result
|
1125
|
+
result.should be_true
|
1126
|
+
end
|
1127
|
+
end
|
1128
|
+
end
|
1129
|
+
|
1130
|
+
end
|