bio-ucsc-api 0.0.3 → 0.0.4

data/spec/hg19/wgencodeuwaffyexonarrayhresimplesignalrep2_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHreSimpleSignalRep2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHreSimpleSignalRep2.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHreSimpleSignalRep2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhrgecsimplesignalrep1_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep1.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhrgecsimplesignalrep2_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep2.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhrpesimplesignalrep1_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep1.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhrpesimplesignalrep2_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep2.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhsmmsimplesignalrep1_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep1.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhsmmsimplesignalrep2_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep2.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhsmmtsimplesignalrep1_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmtSimpleSignalRep1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmtSimpleSignalRep1.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmtSimpleSignalRep1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhuvecsimplesignalrep1_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep1.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhuvecsimplesignalrep2_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep2.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhvmfsimplesignalrep1_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep1.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayhvmfsimplesignalrep2_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep2.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayjurkatsimplesignalrep1_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep1.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayjurkatsimplesignalrep2_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep2.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayk562simplesignalrep1_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep1.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarrayk562simplesignalrep2_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep2.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarraylncapsimplesignalrep1_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep1.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg19/wgencodeuwaffyexonarraylncapsimplesignalrep2_spec.rb

@@ -0,0 +1,24 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000" do
+      it "returns an array of records" do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep2.find_all_by_interval(i)
+        r.should have(41).items
+      end
+
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg19::DBConnection.default
+        Bio::Ucsc::Hg19::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000")
+        r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end