bio-ucsc-api 0.0.3 → 0.0.4

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Files changed (3039) hide show
  1. data/Gemfile +1 -2
  2. data/Gemfile.lock +2 -1
  3. data/README.rdoc +8 -5
  4. data/Rakefile +7 -21
  5. data/VERSION +1 -1
  6. data/bio-ucsc-api.gemspec +2992 -66
  7. data/lib/bio-ucsc/hg18/activerecord.rb +37 -5
  8. data/lib/bio-ucsc/hg18/rmsk.rb +5 -0
  9. data/lib/bio-ucsc/hg19.rb +1736 -65
  10. data/lib/bio-ucsc/hg19/activerecord.rb +89 -6
  11. data/lib/bio-ucsc/hg19/affyexonprobeambiguous.rb +25 -0
  12. data/lib/bio-ucsc/hg19/affyexonprobecore.rb +25 -0
  13. data/lib/bio-ucsc/hg19/affyexonprobeextended.rb +25 -0
  14. data/lib/bio-ucsc/hg19/affyexonprobefree.rb +25 -0
  15. data/lib/bio-ucsc/hg19/affyexonprobefull.rb +25 -0
  16. data/lib/bio-ucsc/hg19/affyexonprobesetambiguous.rb +25 -0
  17. data/lib/bio-ucsc/hg19/affyexonprobesetcore.rb +25 -0
  18. data/lib/bio-ucsc/hg19/affyexonprobesetextended.rb +25 -0
  19. data/lib/bio-ucsc/hg19/affyexonprobesetfree.rb +25 -0
  20. data/lib/bio-ucsc/hg19/affyexonprobesetfull.rb +25 -0
  21. data/lib/bio-ucsc/hg19/affygnf1h.rb +25 -0
  22. data/lib/bio-ucsc/hg19/affyu133.rb +25 -0
  23. data/lib/bio-ucsc/hg19/affyu133plus2.rb +25 -0
  24. data/lib/bio-ucsc/hg19/affyu95.rb +26 -0
  25. data/lib/bio-ucsc/hg19/agilentcgh1x1m.rb +25 -0
  26. data/lib/bio-ucsc/hg19/agilentcgh1x244k.rb +24 -0
  27. data/lib/bio-ucsc/hg19/agilentcgh2x105k.rb +24 -0
  28. data/lib/bio-ucsc/hg19/agilentcgh2x400k.rb +24 -0
  29. data/lib/bio-ucsc/hg19/agilentcgh4x180k.rb +24 -0
  30. data/lib/bio-ucsc/hg19/agilentcgh4x44k.rb +24 -0
  31. data/lib/bio-ucsc/hg19/agilentcgh8x60k.rb +24 -0
  32. data/lib/bio-ucsc/hg19/agilentcghsnp2x400k.rb +24 -0
  33. data/lib/bio-ucsc/hg19/agilentcghsnp4x180k.rb +24 -0
  34. data/lib/bio-ucsc/hg19/agilenthrd1x1m.rb +24 -0
  35. data/lib/bio-ucsc/hg19/all_bacends.rb +25 -0
  36. data/lib/bio-ucsc/hg19/all_est.rb +23 -0
  37. data/lib/bio-ucsc/hg19/all_fosends.rb +23 -0
  38. data/lib/bio-ucsc/hg19/all_mrna.rb +23 -0
  39. data/lib/bio-ucsc/hg19/allenbrainali.rb +26 -0
  40. data/lib/bio-ucsc/hg19/allenbrainurl.rb +27 -0
  41. data/lib/bio-ucsc/hg19/altseqhaplotypes.rb +31 -0
  42. data/lib/bio-ucsc/hg19/altseqliftoverpsl.rb +31 -0
  43. data/lib/bio-ucsc/hg19/altseqpatches.rb +31 -0
  44. data/lib/bio-ucsc/hg19/bacendpairs.rb +28 -0
  45. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignadipose.rb +31 -0
  46. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignadiposeallrawsignal.rb +31 -0
  47. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignbrain.rb +31 -0
  48. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignbrainallrawsignal.rb +31 -0
  49. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignbreast.rb +31 -0
  50. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignbreastallrawsignal.rb +31 -0
  51. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignbt474.rb +31 -0
  52. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignbt474allrawsignal.rb +31 -0
  53. data/lib/bio-ucsc/hg19/burgernaseqgemmapperaligncolon.rb +31 -0
  54. data/lib/bio-ucsc/hg19/burgernaseqgemmapperaligncolonallrawsignal.rb +31 -0
  55. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignheart.rb +31 -0
  56. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignheartallrawsignal.rb +31 -0
  57. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignhme.rb +31 -0
  58. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignhmeallrawsignal.rb +31 -0
  59. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignliver.rb +31 -0
  60. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignliverallrawsignal.rb +31 -0
  61. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignlymphnode.rb +31 -0
  62. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignlymphnodeallrawsignal.rb +31 -0
  63. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignmb435.rb +31 -0
  64. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignmb435allrawsignal.rb +31 -0
  65. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignmcf7.rb +31 -0
  66. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignmcf7allrawsignal.rb +31 -0
  67. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignskelmuscle.rb +31 -0
  68. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignskelmuscleallrawsignal.rb +31 -0
  69. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignt47d.rb +31 -0
  70. data/lib/bio-ucsc/hg19/burgernaseqgemmapperalignt47dallrawsignal.rb +31 -0
  71. data/lib/bio-ucsc/hg19/burgernaseqgemmapperaligntestes.rb +31 -0
  72. data/lib/bio-ucsc/hg19/burgernaseqgemmapperaligntestesallrawsignal.rb +31 -0
  73. data/lib/bio-ucsc/hg19/ccdsgene.rb +0 -5
  74. data/lib/bio-ucsc/hg19/ccdsinfo.rb +23 -0
  75. data/lib/bio-ucsc/hg19/ccdskgmap.rb +23 -0
  76. data/lib/bio-ucsc/hg19/ccdsnotes.rb +22 -0
  77. data/lib/bio-ucsc/hg19/cgapsage.rb +28 -0
  78. data/lib/bio-ucsc/hg19/cgapsagelib.rb +29 -0
  79. data/lib/bio-ucsc/hg19/chainailmel1.rb +29 -0
  80. data/lib/bio-ucsc/hg19/chainanocar1.rb +29 -0
  81. data/lib/bio-ucsc/hg19/chainaplcal1.rb +29 -0
  82. data/lib/bio-ucsc/hg19/chainbostau4.rb +29 -0
  83. data/lib/bio-ucsc/hg19/chaincaljac3.rb +29 -0
  84. data/lib/bio-ucsc/hg19/chaincanfam2.rb +29 -0
  85. data/lib/bio-ucsc/hg19/chaincavpor3.rb +29 -0
  86. data/lib/bio-ucsc/hg19/chaindanrer7.rb +29 -0
  87. data/lib/bio-ucsc/hg19/chainequcab2.rb +29 -0
  88. data/lib/bio-ucsc/hg19/chainfelcat4.rb +29 -0
  89. data/lib/bio-ucsc/hg19/chainfr2.rb +29 -0
  90. data/lib/bio-ucsc/hg19/chaingalgal3.rb +29 -0
  91. data/lib/bio-ucsc/hg19/chaingasacu1.rb +29 -0
  92. data/lib/bio-ucsc/hg19/chainhg19patch2.rb +31 -0
  93. data/lib/bio-ucsc/hg19/chainloxafr3.rb +29 -0
  94. data/lib/bio-ucsc/hg19/chainmm9.rb +29 -0
  95. data/lib/bio-ucsc/hg19/chainmondom5.rb +29 -0
  96. data/lib/bio-ucsc/hg19/chainornana1.rb +29 -0
  97. data/lib/bio-ucsc/hg19/chainorycun2.rb +29 -0
  98. data/lib/bio-ucsc/hg19/chainorylat2.rb +29 -0
  99. data/lib/bio-ucsc/hg19/chainoviari1.rb +28 -0
  100. data/lib/bio-ucsc/hg19/chainpantro3.rb +29 -0
  101. data/lib/bio-ucsc/hg19/chainpetmar1.rb +29 -0
  102. data/lib/bio-ucsc/hg19/chainponabe2.rb +29 -0
  103. data/lib/bio-ucsc/hg19/chainrhemac2.rb +29 -0
  104. data/lib/bio-ucsc/hg19/chainrn4.rb +29 -0
  105. data/lib/bio-ucsc/hg19/chainself.rb +33 -0
  106. data/lib/bio-ucsc/hg19/chainsusscr2.rb +29 -0
  107. data/lib/bio-ucsc/hg19/chaintaegut1.rb +29 -0
  108. data/lib/bio-ucsc/hg19/chaintetnig2.rb +29 -0
  109. data/lib/bio-ucsc/hg19/chainxentro2.rb +29 -0
  110. data/lib/bio-ucsc/hg19/consindelshgmmcanfam.rb +30 -0
  111. data/lib/bio-ucsc/hg19/consindelshgmmcanfamconf.rb +29 -0
  112. data/lib/bio-ucsc/hg19/cpgislandext.rb +38 -0
  113. data/lib/bio-ucsc/hg19/ctgpos.rb +28 -0
  114. data/lib/bio-ucsc/hg19/ctgpos2.rb +28 -0
  115. data/lib/bio-ucsc/hg19/darned.rb +33 -0
  116. data/lib/bio-ucsc/hg19/eiojcvinasneg.rb +41 -0
  117. data/lib/bio-ucsc/hg19/eiojcvinaspos.rb +41 -0
  118. data/lib/bio-ucsc/hg19/ensgtp.rb +23 -0
  119. data/lib/bio-ucsc/hg19/enspep.rb +23 -0
  120. data/lib/bio-ucsc/hg19/estorientinfo.rb +24 -0
  121. data/lib/bio-ucsc/hg19/evofold.rb +26 -0
  122. data/lib/bio-ucsc/hg19/exoniphy.rb +32 -0
  123. data/lib/bio-ucsc/hg19/fishclones.rb +27 -0
  124. data/lib/bio-ucsc/hg19/fosendpairs.rb +26 -0
  125. data/lib/bio-ucsc/hg19/gad.rb +31 -0
  126. data/lib/bio-ucsc/hg19/gap.rb +26 -0
  127. data/lib/bio-ucsc/hg19/gbmiscdiff.rb +22 -0
  128. data/lib/bio-ucsc/hg19/gbseq.rb +24 -0
  129. data/lib/bio-ucsc/hg19/gbstatus.rb +23 -0
  130. data/lib/bio-ucsc/hg19/gbwarn.rb +22 -0
  131. data/lib/bio-ucsc/hg19/gc5base.rb +25 -0
  132. data/lib/bio-ucsc/hg19/geneid.rb +28 -0
  133. data/lib/bio-ucsc/hg19/genomicsuperdups.rb +25 -0
  134. data/lib/bio-ucsc/hg19/genscan.rb +28 -0
  135. data/lib/bio-ucsc/hg19/genscanpep.rb +23 -0
  136. data/lib/bio-ucsc/hg19/ggburgernaseqgemmapperalignheart.rb +31 -0
  137. data/lib/bio-ucsc/hg19/gnfatlas2.rb +30 -0
  138. data/lib/bio-ucsc/hg19/gold.rb +28 -0
  139. data/lib/bio-ucsc/hg19/hg19contigdiff.rb +26 -0
  140. data/lib/bio-ucsc/hg19/hgcentral_wikitrack.rb +27 -0
  141. data/lib/bio-ucsc/hg19/hgdpgeo.rb +28 -0
  142. data/lib/bio-ucsc/hg19/hgfixed_gladhumesotherdata.rb +22 -0
  143. data/lib/bio-ucsc/hg19/hgfixed_gnfhumanatlas2all.rb +22 -0
  144. data/lib/bio-ucsc/hg19/hgfixed_gnfhumanatlas2allratio.rb +22 -0
  145. data/lib/bio-ucsc/hg19/hgfixed_gnfhumanatlas2median.rb +22 -0
  146. data/lib/bio-ucsc/hg19/hgfixed_gnfhumanatlas2medianexps.rb +22 -0
  147. data/lib/bio-ucsc/hg19/hgfixed_gnfhumanatlas2medianratio.rb +22 -0
  148. data/lib/bio-ucsc/hg19/hgfixed_transmapsrcmrna.rb +24 -0
  149. data/lib/bio-ucsc/hg19/hgfixed_transmapsrcrefseq.rb +24 -0
  150. data/lib/bio-ucsc/hg19/hgfixed_transmapsrcsplicedest.rb +24 -0
  151. data/lib/bio-ucsc/hg19/hgfixed_transmapsrcucscgenes.rb +28 -0
  152. data/lib/bio-ucsc/hg19/hgikmc.rb +30 -0
  153. data/lib/bio-ucsc/hg19/hgikmcextra.rb +30 -0
  154. data/lib/bio-ucsc/hg19/hinv.rb +23 -0
  155. data/lib/bio-ucsc/hg19/hinvgenemrna.rb +29 -0
  156. data/lib/bio-ucsc/hg19/illuminaprobes.rb +23 -0
  157. data/lib/bio-ucsc/hg19/illuminaprobesalign.rb +24 -0
  158. data/lib/bio-ucsc/hg19/illuminaprobesseq.rb +22 -0
  159. data/lib/bio-ucsc/hg19/imageclone.rb +23 -0
  160. data/lib/bio-ucsc/hg19/intronest.rb +28 -0
  161. data/lib/bio-ucsc/hg19/jaxqtlasis.rb +32 -0
  162. data/lib/bio-ucsc/hg19/jaxqtlpadded.rb +32 -0
  163. data/lib/bio-ucsc/hg19/knownalt.rb +25 -0
  164. data/lib/bio-ucsc/hg19/knowngene.rb +1 -1
  165. data/lib/bio-ucsc/hg19/knowntoensembl.rb +23 -0
  166. data/lib/bio-ucsc/hg19/knowntognfatlas2.rb +22 -0
  167. data/lib/bio-ucsc/hg19/knowntohinv.rb +23 -0
  168. data/lib/bio-ucsc/hg19/knowntorefseq.rb +22 -0
  169. data/lib/bio-ucsc/hg19/knowntou133.rb +22 -0
  170. data/lib/bio-ucsc/hg19/knowntou133plus2.rb +22 -0
  171. data/lib/bio-ucsc/hg19/knowntou95.rb +22 -0
  172. data/lib/bio-ucsc/hg19/laminb1lads.rb +24 -0
  173. data/lib/bio-ucsc/hg19/mgcfullmrna.rb +29 -0
  174. data/lib/bio-ucsc/hg19/mgcgenes.rb +24 -0
  175. data/lib/bio-ucsc/hg19/microsat.rb +26 -0
  176. data/lib/bio-ucsc/hg19/mrnaorientinfo.rb +25 -0
  177. data/lib/bio-ucsc/hg19/multiz46way.rb +30 -0
  178. data/lib/bio-ucsc/hg19/ncbiincidentdb.rb +23 -0
  179. data/lib/bio-ucsc/hg19/nestedrepeats.rb +28 -0
  180. data/lib/bio-ucsc/hg19/netailmel1.rb +28 -0
  181. data/lib/bio-ucsc/hg19/netanocar1.rb +28 -0
  182. data/lib/bio-ucsc/hg19/netaplcal1.rb +28 -0
  183. data/lib/bio-ucsc/hg19/netbostau4.rb +28 -0
  184. data/lib/bio-ucsc/hg19/netcaljac3.rb +28 -0
  185. data/lib/bio-ucsc/hg19/netcanfam2.rb +28 -0
  186. data/lib/bio-ucsc/hg19/netcavpor3.rb +28 -0
  187. data/lib/bio-ucsc/hg19/netdanrer7.rb +28 -0
  188. data/lib/bio-ucsc/hg19/netequcab2.rb +28 -0
  189. data/lib/bio-ucsc/hg19/netfelcat4.rb +28 -0
  190. data/lib/bio-ucsc/hg19/netfr2.rb +28 -0
  191. data/lib/bio-ucsc/hg19/netgalgal3.rb +28 -0
  192. data/lib/bio-ucsc/hg19/netgasacu1.rb +28 -0
  193. data/lib/bio-ucsc/hg19/nethg19patch2.rb +32 -0
  194. data/lib/bio-ucsc/hg19/netloxafr3.rb +28 -0
  195. data/lib/bio-ucsc/hg19/netmm9.rb +28 -0
  196. data/lib/bio-ucsc/hg19/netmondom5.rb +28 -0
  197. data/lib/bio-ucsc/hg19/netornana1.rb +28 -0
  198. data/lib/bio-ucsc/hg19/netorycun2.rb +28 -0
  199. data/lib/bio-ucsc/hg19/netorylat2.rb +28 -0
  200. data/lib/bio-ucsc/hg19/netoviari1.rb +28 -0
  201. data/lib/bio-ucsc/hg19/netpantro3.rb +28 -0
  202. data/lib/bio-ucsc/hg19/netpetmar1.rb +28 -0
  203. data/lib/bio-ucsc/hg19/netponabe2.rb +28 -0
  204. data/lib/bio-ucsc/hg19/netrhemac2.rb +28 -0
  205. data/lib/bio-ucsc/hg19/netrn4.rb +28 -0
  206. data/lib/bio-ucsc/hg19/netsusscr2.rb +28 -0
  207. data/lib/bio-ucsc/hg19/nettaegut1.rb +28 -0
  208. data/lib/bio-ucsc/hg19/nettetnig2.rb +28 -0
  209. data/lib/bio-ucsc/hg19/netxentro2.rb +28 -0
  210. data/lib/bio-ucsc/hg19/nscangene.rb +26 -0
  211. data/lib/bio-ucsc/hg19/nscanpep.rb +23 -0
  212. data/lib/bio-ucsc/hg19/nthumchimpcodingdiff.rb +26 -0
  213. data/lib/bio-ucsc/hg19/ntooahaplo.rb +32 -0
  214. data/lib/bio-ucsc/hg19/ntssssnps.rb +25 -0
  215. data/lib/bio-ucsc/hg19/ntssstop5p.rb +26 -0
  216. data/lib/bio-ucsc/hg19/oreganno.rb +27 -0
  217. data/lib/bio-ucsc/hg19/oregannoattr.rb +26 -0
  218. data/lib/bio-ucsc/hg19/oregannolink.rb +26 -0
  219. data/lib/bio-ucsc/hg19/orfeomegenes.rb +24 -0
  220. data/lib/bio-ucsc/hg19/orfeomemrna.rb +30 -0
  221. data/lib/bio-ucsc/hg19/pgna12878.rb +28 -0
  222. data/lib/bio-ucsc/hg19/pgna12891.rb +28 -0
  223. data/lib/bio-ucsc/hg19/pgna12892.rb +28 -0
  224. data/lib/bio-ucsc/hg19/pgna19240.rb +28 -0
  225. data/lib/bio-ucsc/hg19/pgsjk.rb +28 -0
  226. data/lib/bio-ucsc/hg19/pgventer.rb +28 -0
  227. data/lib/bio-ucsc/hg19/pgwatson.rb +28 -0
  228. data/lib/bio-ucsc/hg19/pgyh1.rb +28 -0
  229. data/lib/bio-ucsc/hg19/pgyoruban3.rb +31 -0
  230. data/lib/bio-ucsc/hg19/phastcons46way.rb +30 -0
  231. data/lib/bio-ucsc/hg19/phastcons46wayplacental.rb +30 -0
  232. data/lib/bio-ucsc/hg19/phastcons46wayprimates.rb +30 -0
  233. data/lib/bio-ucsc/hg19/phastconselements46way.rb +30 -0
  234. data/lib/bio-ucsc/hg19/phastconselements46wayplacental.rb +30 -0
  235. data/lib/bio-ucsc/hg19/phylop46wayall.rb +31 -0
  236. data/lib/bio-ucsc/hg19/phylop46wayplacental.rb +31 -0
  237. data/lib/bio-ucsc/hg19/polyadb.rb +29 -0
  238. data/lib/bio-ucsc/hg19/polyapredict.rb +29 -0
  239. data/lib/bio-ucsc/hg19/recombrate.rb +29 -0
  240. data/lib/bio-ucsc/hg19/refflat.rb +24 -0
  241. data/lib/bio-ucsc/hg19/reflink.rb +23 -0
  242. data/lib/bio-ucsc/hg19/refseqali.rb +24 -0
  243. data/lib/bio-ucsc/hg19/refseqstatus.rb +23 -0
  244. data/lib/bio-ucsc/hg19/rgdqtl.rb +28 -0
  245. data/lib/bio-ucsc/hg19/rgdqtllink.rb +29 -0
  246. data/lib/bio-ucsc/hg19/rgdratqtl.rb +31 -0
  247. data/lib/bio-ucsc/hg19/rgdratqtllink.rb +32 -0
  248. data/lib/bio-ucsc/hg19/rnacluster.rb +28 -0
  249. data/lib/bio-ucsc/hg19/seq.rb +22 -0
  250. data/lib/bio-ucsc/hg19/sestanbrainatlas.rb +30 -0
  251. data/lib/bio-ucsc/hg19/sgpgene.rb +30 -0
  252. data/lib/bio-ucsc/hg19/sibtxgraph.rb +30 -0
  253. data/lib/bio-ucsc/hg19/simplerepeat.rb +27 -0
  254. data/lib/bio-ucsc/hg19/snparrayaffy250nsp.rb +26 -0
  255. data/lib/bio-ucsc/hg19/snparrayaffy250sty.rb +26 -0
  256. data/lib/bio-ucsc/hg19/snparrayaffy5.rb +27 -0
  257. data/lib/bio-ucsc/hg19/snparrayaffy6.rb +36 -0
  258. data/lib/bio-ucsc/hg19/snparrayaffy6sv.rb +36 -0
  259. data/lib/bio-ucsc/hg19/snparrayillumina1m.rb +26 -0
  260. data/lib/bio-ucsc/hg19/snparrayillumina300.rb +29 -0
  261. data/lib/bio-ucsc/hg19/snparrayillumina550.rb +29 -0
  262. data/lib/bio-ucsc/hg19/snparrayillumina650.rb +29 -0
  263. data/lib/bio-ucsc/hg19/snparrayilluminahuman660w_quad.rb +28 -0
  264. data/lib/bio-ucsc/hg19/snparrayilluminahumancytosnp_12.rb +26 -0
  265. data/lib/bio-ucsc/hg19/snparrayilluminahumanomni1_quad.rb +36 -0
  266. data/lib/bio-ucsc/hg19/spmrna.rb +23 -0
  267. data/lib/bio-ucsc/hg19/stsalias.rb +22 -0
  268. data/lib/bio-ucsc/hg19/stsinfo2.rb +22 -0
  269. data/lib/bio-ucsc/hg19/stsmap.rb +33 -0
  270. data/lib/bio-ucsc/hg19/switchdbtss.rb +31 -0
  271. data/lib/bio-ucsc/hg19/targetscans.rb +25 -0
  272. data/lib/bio-ucsc/hg19/tfbsconssites.rb +30 -0
  273. data/lib/bio-ucsc/hg19/transmapalnmrna.rb +28 -0
  274. data/lib/bio-ucsc/hg19/transmapalnrefseq.rb +28 -0
  275. data/lib/bio-ucsc/hg19/transmapalnsplicedest.rb +24 -0
  276. data/lib/bio-ucsc/hg19/transmapalnucscgenes.rb +28 -0
  277. data/lib/bio-ucsc/hg19/transmapinfomrna.rb +23 -0
  278. data/lib/bio-ucsc/hg19/transmapinforefseq.rb +23 -0
  279. data/lib/bio-ucsc/hg19/transmapinfosplicedest.rb +23 -0
  280. data/lib/bio-ucsc/hg19/transmapinfoucscgenes.rb +23 -0
  281. data/lib/bio-ucsc/hg19/ucsfchipseqh3k4me3braincoverage.rb +29 -0
  282. data/lib/bio-ucsc/hg19/ucsfmedipseqbraincoverage.rb +29 -0
  283. data/lib/bio-ucsc/hg19/ucsfmedipseqbraincpg.rb +29 -0
  284. data/lib/bio-ucsc/hg19/ucsfmreseqbraincpg.rb +29 -0
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  1516. data/spec/hg19/affyexonprobesetambiguous_spec.rb +24 -0
  1517. data/spec/hg19/affyexonprobesetcore_spec.rb +24 -0
  1518. data/spec/hg19/affyexonprobesetextended_spec.rb +24 -0
  1519. data/spec/hg19/affyexonprobesetfree_spec.rb +24 -0
  1520. data/spec/hg19/affyexonprobesetfull_spec.rb +24 -0
  1521. data/spec/hg19/affygnf1h_spec.rb +24 -0
  1522. data/spec/hg19/affyu133_spec.rb +24 -0
  1523. data/spec/hg19/affyu133plus2_spec.rb +24 -0
  1524. data/spec/hg19/affyu95_spec.rb +24 -0
  1525. data/spec/hg19/agilentcgh1x1m_spec.rb +24 -0
  1526. data/spec/hg19/agilentcgh1x244k_spec.rb +24 -0
  1527. data/spec/hg19/agilentcgh2x105k_spec.rb +24 -0
  1528. data/spec/hg19/agilentcgh2x400k_spec.rb +24 -0
  1529. data/spec/hg19/agilentcgh4x180k_spec.rb +24 -0
  1530. data/spec/hg19/agilentcgh4x44k_spec.rb +24 -0
  1531. data/spec/hg19/agilentcgh8x60k_spec.rb +24 -0
  1532. data/spec/hg19/agilentcghsnp2x400k_spec.rb +24 -0
  1533. data/spec/hg19/agilentcghsnp4x180k_spec.rb +24 -0
  1534. data/spec/hg19/agilenthrd1x1m_spec.rb +24 -0
  1535. data/spec/hg19/all_bacends_spec.rb +24 -0
  1536. data/spec/hg19/all_est_spec.rb +24 -0
  1537. data/spec/hg19/all_fosends_spec.rb +24 -0
  1538. data/spec/hg19/all_mrna_spec.rb +24 -0
  1539. data/spec/hg19/allenbrainali_spec.rb +24 -0
  1540. data/spec/hg19/allenbrainurl_spec.rb +15 -0
  1541. data/spec/hg19/altseqhaplotypes_spec.rb +24 -0
  1542. data/spec/hg19/altseqliftoverpsl_spec.rb +24 -0
  1543. data/spec/hg19/altseqpatches_spec.rb +24 -0
  1544. data/spec/hg19/bacendpairs_spec.rb +24 -0
  1545. data/spec/hg19/burgernaseqgemmapperalignadipose_spec.rb +24 -0
  1546. data/spec/hg19/burgernaseqgemmapperalignadiposeallrawsignal_spec.rb +24 -0
  1547. data/spec/hg19/burgernaseqgemmapperalignbrain_spec.rb +24 -0
  1548. data/spec/hg19/burgernaseqgemmapperalignbrainallrawsignal_spec.rb +24 -0
  1549. data/spec/hg19/burgernaseqgemmapperalignbreast_spec.rb +24 -0
  1550. data/spec/hg19/burgernaseqgemmapperalignbreastallrawsignal_spec.rb +24 -0
  1551. data/spec/hg19/burgernaseqgemmapperalignbt474_spec.rb +24 -0
  1552. data/spec/hg19/burgernaseqgemmapperalignbt474allrawsignal_spec.rb +24 -0
  1553. data/spec/hg19/burgernaseqgemmapperaligncolon_spec.rb +24 -0
  1554. data/spec/hg19/burgernaseqgemmapperaligncolonallrawsignal_spec.rb +24 -0
  1555. data/spec/hg19/burgernaseqgemmapperalignheart_spec.rb +24 -0
  1556. data/spec/hg19/burgernaseqgemmapperalignheartallrawsignal_spec.rb +24 -0
  1557. data/spec/hg19/burgernaseqgemmapperalignhme_spec.rb +24 -0
  1558. data/spec/hg19/burgernaseqgemmapperalignhmeallrawsignal_spec.rb +24 -0
  1559. data/spec/hg19/burgernaseqgemmapperalignliver_spec.rb +24 -0
  1560. data/spec/hg19/burgernaseqgemmapperalignliverallrawsignal_spec.rb +24 -0
  1561. data/spec/hg19/burgernaseqgemmapperalignlymphnode_spec.rb +24 -0
  1562. data/spec/hg19/burgernaseqgemmapperalignlymphnodeallrawsignal_spec.rb +24 -0
  1563. data/spec/hg19/burgernaseqgemmapperalignmb435_spec.rb +24 -0
  1564. data/spec/hg19/burgernaseqgemmapperalignmb435allrawsignal_spec.rb +24 -0
  1565. data/spec/hg19/burgernaseqgemmapperalignmcf7_spec.rb +24 -0
  1566. data/spec/hg19/burgernaseqgemmapperalignmcf7allrawsignal_spec.rb +24 -0
  1567. data/spec/hg19/burgernaseqgemmapperalignskelmuscle_spec.rb +24 -0
  1568. data/spec/hg19/burgernaseqgemmapperalignskelmuscleallrawsignal_spec.rb +24 -0
  1569. data/spec/hg19/burgernaseqgemmapperalignt47d_spec.rb +24 -0
  1570. data/spec/hg19/burgernaseqgemmapperalignt47dallrawsignal_spec.rb +24 -0
  1571. data/spec/hg19/burgernaseqgemmapperaligntestes_spec.rb +24 -0
  1572. data/spec/hg19/burgernaseqgemmapperaligntestesallrawsignal_spec.rb +24 -0
  1573. data/spec/hg19/ccdsgene_spec.rb +5 -5
  1574. data/spec/hg19/ccdsinfo_spec.rb +15 -0
  1575. data/spec/hg19/ccdskgmap_spec.rb +25 -0
  1576. data/spec/hg19/ccdsnotes_spec.rb +15 -0
  1577. data/spec/hg19/cgapsage_spec.rb +24 -0
  1578. data/spec/hg19/cgapsagelib_spec.rb +15 -0
  1579. data/spec/hg19/chainailmel1_spec.rb +16 -0
  1580. data/spec/hg19/chainanocar1_spec.rb +16 -0
  1581. data/spec/hg19/chainaplcal1_spec.rb +16 -0
  1582. data/spec/hg19/chainbostau4_spec.rb +16 -0
  1583. data/spec/hg19/chaincaljac3_spec.rb +16 -0
  1584. data/spec/hg19/chaincanfam2_spec.rb +16 -0
  1585. data/spec/hg19/chaincavpor3_spec.rb +16 -0
  1586. data/spec/hg19/chaindanrer7_spec.rb +16 -0
  1587. data/spec/hg19/chainequcab2_spec.rb +16 -0
  1588. data/spec/hg19/chainfelcat4_spec.rb +16 -0
  1589. data/spec/hg19/chainfr2_spec.rb +16 -0
  1590. data/spec/hg19/chaingalgal3_spec.rb +16 -0
  1591. data/spec/hg19/chaingasacu1_spec.rb +16 -0
  1592. data/spec/hg19/chainhg19patch2_spec.rb +24 -0
  1593. data/spec/hg19/chainloxafr3_spec.rb +16 -0
  1594. data/spec/hg19/chainmm9_spec.rb +16 -0
  1595. data/spec/hg19/chainmondom5_spec.rb +16 -0
  1596. data/spec/hg19/chainornana1_spec.rb +16 -0
  1597. data/spec/hg19/chainorycun2_spec.rb +16 -0
  1598. data/spec/hg19/chainorylat2_spec.rb +16 -0
  1599. data/spec/hg19/chainoviari1_spec.rb +16 -0
  1600. data/spec/hg19/chainpantro3_spec.rb +16 -0
  1601. data/spec/hg19/chainpetmar1_spec.rb +16 -0
  1602. data/spec/hg19/chainponabe2_spec.rb +16 -0
  1603. data/spec/hg19/chainrhemac2_spec.rb +16 -0
  1604. data/spec/hg19/chainrn4_spec.rb +16 -0
  1605. data/spec/hg19/chainself_spec.rb +24 -0
  1606. data/spec/hg19/chainsusscr2_spec.rb +16 -0
  1607. data/spec/hg19/chaintaegut1_spec.rb +16 -0
  1608. data/spec/hg19/chaintetnig2_spec.rb +16 -0
  1609. data/spec/hg19/chainxentro2_spec.rb +16 -0
  1610. data/spec/hg19/consindelshgmmcanfam_spec.rb +16 -0
  1611. data/spec/hg19/consindelshgmmcanfamconf_spec.rb +15 -0
  1612. data/spec/hg19/cpgislandext_spec.rb +16 -0
  1613. data/spec/hg19/ctgpos2_spec.rb +24 -0
  1614. data/spec/hg19/ctgpos_spec.rb +24 -0
  1615. data/spec/hg19/cytoband_spec.rb +4 -4
  1616. data/spec/hg19/darned_spec.rb +24 -0
  1617. data/spec/hg19/description_spec.rb +2 -2
  1618. data/spec/hg19/dgv_spec.rb +4 -4
  1619. data/spec/hg19/eiojcvinasneg_spec.rb +16 -0
  1620. data/spec/hg19/eiojcvinaspos_spec.rb +16 -0
  1621. data/spec/hg19/ensgene_spec.rb +4 -4
  1622. data/spec/hg19/ensgtp_spec.rb +15 -0
  1623. data/spec/hg19/enspep_spec.rb +15 -0
  1624. data/spec/hg19/estorientinfo_spec.rb +24 -0
  1625. data/spec/hg19/evofold_spec.rb +24 -0
  1626. data/spec/hg19/exoniphy_spec.rb +24 -0
  1627. data/spec/hg19/fishclones_spec.rb +24 -0
  1628. data/spec/hg19/fosendpairs_spec.rb +24 -0
  1629. data/spec/hg19/gad_spec.rb +24 -0
  1630. data/spec/hg19/gap_spec.rb +24 -0
  1631. data/spec/hg19/gbcdnainfo_spec.rb +2 -2
  1632. data/spec/hg19/gbmiscdiff_spec.rb +15 -0
  1633. data/spec/hg19/gbseq_spec.rb +15 -0
  1634. data/spec/hg19/gbstatus_spec.rb +15 -0
  1635. data/spec/hg19/gbwarn_spec.rb +15 -0
  1636. data/spec/hg19/gc5base_spec.rb +24 -0
  1637. data/spec/hg19/geneid_spec.rb +24 -0
  1638. data/spec/hg19/genomicsuperdups_spec.rb +24 -0
  1639. data/spec/hg19/genscan_spec.rb +24 -0
  1640. data/spec/hg19/genscanpep_spec.rb +15 -0
  1641. data/spec/hg19/gnfatlas2_spec.rb +24 -0
  1642. data/spec/hg19/gold_spec.rb +24 -0
  1643. data/spec/hg19/gwascatalog_spec.rb +4 -4
  1644. data/spec/hg19/hapmapalleleschimp_spec.rb +5 -4
  1645. data/spec/hg19/hapmapallelesmacaque_spec.rb +5 -4
  1646. data/spec/hg19/hapmapsnpsasw_spec.rb +5 -4
  1647. data/spec/hg19/hapmapsnpsceu_spec.rb +5 -4
  1648. data/spec/hg19/hapmapsnpschb_spec.rb +5 -4
  1649. data/spec/hg19/hapmapsnpschd_spec.rb +5 -4
  1650. data/spec/hg19/hapmapsnpsgih_spec.rb +5 -4
  1651. data/spec/hg19/hapmapsnpsjpt_spec.rb +5 -4
  1652. data/spec/hg19/hapmapsnpslwk_spec.rb +5 -4
  1653. data/spec/hg19/hapmapsnpsmex_spec.rb +5 -4
  1654. data/spec/hg19/hapmapsnpsmkk_spec.rb +3 -2
  1655. data/spec/hg19/hapmapsnpstsi_spec.rb +5 -4
  1656. data/spec/hg19/hapmapsnpsyri_spec.rb +5 -4
  1657. data/spec/hg19/hg19contigdiff_spec.rb +24 -0
  1658. data/spec/hg19/hgcentral_wikitrack_spec.rb +24 -0
  1659. data/spec/hg19/hgdpgeo_spec.rb +24 -0
  1660. data/spec/hg19/hgfixed_gladhumesotherdata_spec.rb +15 -0
  1661. data/spec/hg19/hgfixed_gnfhumanatlas2all_spec.rb +15 -0
  1662. data/spec/hg19/hgfixed_gnfhumanatlas2allratio_spec.rb +15 -0
  1663. data/spec/hg19/hgfixed_gnfhumanatlas2median_spec.rb +15 -0
  1664. data/spec/hg19/hgfixed_gnfhumanatlas2medianexps_spec.rb +15 -0
  1665. data/spec/hg19/hgfixed_gnfhumanatlas2medianratio_spec.rb +15 -0
  1666. data/spec/hg19/hgfixed_transmapsrcmrna_spec.rb +24 -0
  1667. data/spec/hg19/hgfixed_transmapsrcrefseq_spec.rb +24 -0
  1668. data/spec/hg19/hgfixed_transmapsrcsplicedest_spec.rb +24 -0
  1669. data/spec/hg19/hgfixed_transmapsrcucscgenes_spec.rb +24 -0
  1670. data/spec/hg19/hgikmc_spec.rb +36 -0
  1671. data/spec/hg19/hgikmcextra_spec.rb +16 -0
  1672. data/spec/hg19/hinv_spec.rb +15 -0
  1673. data/spec/hg19/hinvgenemrna_spec.rb +24 -0
  1674. data/spec/hg19/illuminaprobes_spec.rb +24 -0
  1675. data/spec/hg19/illuminaprobesalign_spec.rb +24 -0
  1676. data/spec/hg19/illuminaprobesseq_spec.rb +16 -0
  1677. data/spec/hg19/imageclone_spec.rb +15 -0
  1678. data/spec/hg19/intronest_spec.rb +24 -0
  1679. data/spec/hg19/jaxqtlasis_spec.rb +25 -0
  1680. data/spec/hg19/jaxqtlpadded_spec.rb +24 -0
  1681. data/spec/hg19/knownalt_spec.rb +24 -0
  1682. data/spec/hg19/knowngene_spec.rb +5 -4
  1683. data/spec/hg19/knowntoensembl_spec.rb +15 -0
  1684. data/spec/hg19/knowntognfatlas2_spec.rb +15 -0
  1685. data/spec/hg19/knowntohinv_spec.rb +15 -0
  1686. data/spec/hg19/knowntorefseq_spec.rb +15 -0
  1687. data/spec/hg19/knowntou133_spec.rb +15 -0
  1688. data/spec/hg19/knowntou133plus2_spec.rb +15 -0
  1689. data/spec/hg19/knowntou95_spec.rb +15 -0
  1690. data/spec/hg19/laminb1_spec.rb +16 -0
  1691. data/spec/hg19/laminb1lads_spec.rb +16 -0
  1692. data/spec/hg19/mgcfullmrna_spec.rb +24 -0
  1693. data/spec/hg19/mgcgenes_spec.rb +24 -0
  1694. data/spec/hg19/microsat_spec.rb +24 -0
  1695. data/spec/hg19/mrnaorinetinfo_spec.rb +24 -0
  1696. data/spec/hg19/multiz46way_spec.rb +16 -0
  1697. data/spec/hg19/ncbiincidentdb_spec.rb +25 -0
  1698. data/spec/hg19/nestedrepeats_spec.rb +24 -0
  1699. data/spec/hg19/netailmel1_spec.rb +16 -0
  1700. data/spec/hg19/netanocar1_spec.rb +16 -0
  1701. data/spec/hg19/netaplcal1_spec.rb +16 -0
  1702. data/spec/hg19/netbostau4_spec.rb +16 -0
  1703. data/spec/hg19/netcaljac3_spec.rb +16 -0
  1704. data/spec/hg19/netcanfam2_spec.rb +16 -0
  1705. data/spec/hg19/netcavpor3_spec.rb +16 -0
  1706. data/spec/hg19/netdanrer7_spec.rb +16 -0
  1707. data/spec/hg19/netequcab2_spec.rb +16 -0
  1708. data/spec/hg19/netfelcat4_spec.rb +16 -0
  1709. data/spec/hg19/netfr2_spec.rb +16 -0
  1710. data/spec/hg19/netgalgal3_spec.rb +16 -0
  1711. data/spec/hg19/netgasacu1_spec.rb +16 -0
  1712. data/spec/hg19/nethg19patch2_spec.rb +24 -0
  1713. data/spec/hg19/netloxafr3_spec.rb +16 -0
  1714. data/spec/hg19/netmm9_spec.rb +16 -0
  1715. data/spec/hg19/netmondom5_spec.rb +16 -0
  1716. data/spec/hg19/netornana1_spec.rb +16 -0
  1717. data/spec/hg19/netorycun2_spec.rb +16 -0
  1718. data/spec/hg19/netorylat2_spec.rb +16 -0
  1719. data/spec/hg19/netoviari1_spec.rb +16 -0
  1720. data/spec/hg19/netpantro3_spec.rb +16 -0
  1721. data/spec/hg19/netpetmar1_spec.rb +16 -0
  1722. data/spec/hg19/netponabe2_spec.rb +16 -0
  1723. data/spec/hg19/netrhemac2_spec.rb +16 -0
  1724. data/spec/hg19/netrn4_spec.rb +16 -0
  1725. data/spec/hg19/netsusscr2_spec.rb +16 -0
  1726. data/spec/hg19/nettaegut1_spec.rb +16 -0
  1727. data/spec/hg19/nettetnig2_spec.rb +16 -0
  1728. data/spec/hg19/netxentro2_spec.rb +16 -0
  1729. data/spec/hg19/nscangene_spec.rb +24 -0
  1730. data/spec/hg19/nscanpep_spec.rb +15 -0
  1731. data/spec/hg19/nthumchimpcodingdiff_spec.rb +24 -0
  1732. data/spec/hg19/ntooahaplo_spec.rb +24 -0
  1733. data/spec/hg19/ntssssnps_spec.rb +24 -0
  1734. data/spec/hg19/ntssstop5p_spec.rb +24 -0
  1735. data/spec/hg19/omimGene_spec.rb +5 -4
  1736. data/spec/hg19/oreganno_spec.rb +16 -0
  1737. data/spec/hg19/oregannoattr_spec.rb +15 -0
  1738. data/spec/hg19/oregannolink_spec.rb +15 -0
  1739. data/spec/hg19/orfeomegenes_spec.rb +24 -0
  1740. data/spec/hg19/orfeomemrna_spec.rb +24 -0
  1741. data/spec/hg19/pgna12878_spec.rb +24 -0
  1742. data/spec/hg19/pgna12891_spec.rb +24 -0
  1743. data/spec/hg19/pgna12892_spec.rb +24 -0
  1744. data/spec/hg19/pgna19240_spec.rb +24 -0
  1745. data/spec/hg19/pgsjk_spec.rb +24 -0
  1746. data/spec/hg19/pgventer_spec.rb +24 -0
  1747. data/spec/hg19/pgwatson_spec.rb +24 -0
  1748. data/spec/hg19/pgyh1_spec.rb +24 -0
  1749. data/spec/hg19/pgyoruban3_spec.rb +24 -0
  1750. data/spec/hg19/phastcons46way_spec.rb +16 -0
  1751. data/spec/hg19/phastcons46wayplacental_spec.rb +16 -0
  1752. data/spec/hg19/phastcons46wayprimates_spec.rb +16 -0
  1753. data/spec/hg19/phastconselements46way_spec.rb +16 -0
  1754. data/spec/hg19/phastconselements46wayplacental_spec.rb +16 -0
  1755. data/spec/hg19/phastconselements46wayprimates_spec.rb +5 -4
  1756. data/spec/hg19/phylop46wayall_spec.rb +16 -0
  1757. data/spec/hg19/phylop46wayplacental_spec.rb +16 -0
  1758. data/spec/hg19/{phyloP46wayPrimates_spec.rb → phylop46wayprimates_spec.rb} +5 -4
  1759. data/spec/hg19/polyadb_spec.rb +24 -0
  1760. data/spec/hg19/polyapredict_spec.rb +24 -0
  1761. data/spec/hg19/recombrate_spec.rb +24 -0
  1762. data/spec/hg19/refflat_spec.rb +24 -0
  1763. data/spec/hg19/refgene_spec.rb +5 -4
  1764. data/spec/hg19/reflink_spec.rb +15 -0
  1765. data/spec/hg19/refseqali_spec.rb +24 -0
  1766. data/spec/hg19/refseqstatus_spec.rb +15 -0
  1767. data/spec/hg19/rgdqtl_spec.rb +24 -0
  1768. data/spec/hg19/rgdqtllink_spec.rb +15 -0
  1769. data/spec/hg19/rgdratqtl_spec.rb +24 -0
  1770. data/spec/hg19/rgdratqtllink_spec.rb +15 -0
  1771. data/spec/hg19/rmsk_spec.rb +5 -4
  1772. data/spec/hg19/rnacluster_spec.rb +24 -0
  1773. data/spec/hg19/seq_spec.rb +15 -0
  1774. data/spec/hg19/sestanbrainatlas_spec.rb +24 -0
  1775. data/spec/hg19/sgpgene_spec.rb +24 -0
  1776. data/spec/hg19/sibtxgraph_spec.rb +24 -0
  1777. data/spec/hg19/simplerepeat_spec.rb +24 -0
  1778. data/spec/hg19/snp132_spec.rb +5 -4
  1779. data/spec/hg19/snp132codingdbsnp_spec.rb +5 -4
  1780. data/spec/hg19/snp132common_spec.rb +5 -4
  1781. data/spec/hg19/{snp132Flagged_spec.rb → snp132flagged_spec.rb} +3 -2
  1782. data/spec/hg19/snp132mult_spec.rb +5 -4
  1783. data/spec/hg19/snparrayaffy250nsp_spec.rb +24 -0
  1784. data/spec/hg19/snparrayaffy250sty_spec.rb +24 -0
  1785. data/spec/hg19/snparrayaffy5_spec.rb +24 -0
  1786. data/spec/hg19/snparrayaffy6_spec.rb +24 -0
  1787. data/spec/hg19/snparrayaffy6sv_spec.rb +24 -0
  1788. data/spec/hg19/snparrayillumina1m_spec.rb +24 -0
  1789. data/spec/hg19/snparrayillumina300_spec.rb +24 -0
  1790. data/spec/hg19/snparrayillumina550_spec.rb +24 -0
  1791. data/spec/hg19/snparrayillumina650_spec.rb +24 -0
  1792. data/spec/hg19/snparrayilluminahuman660w_quad_spec.rb +24 -0
  1793. data/spec/hg19/snparrayilluminahumancytosnp_12_spec.rb +24 -0
  1794. data/spec/hg19/snparrayilluminahumanomni1_quad_spec.rb +24 -0
  1795. data/spec/hg19/spmrna_spec.rb +15 -0
  1796. data/spec/hg19/stsalias_spec.rb +15 -0
  1797. data/spec/hg19/stsinfo2_spec.rb +15 -0
  1798. data/spec/hg19/stsmap_spec.rb +32 -0
  1799. data/spec/hg19/switchdbtss_spec.rb +16 -0
  1800. data/spec/hg19/targetscans_spec.rb +16 -0
  1801. data/spec/hg19/tfbsconssites_spec.rb +16 -0
  1802. data/spec/hg19/transmapalnmrna_spec.rb +24 -0
  1803. data/spec/hg19/transmapalnrefseq_spec.rb +24 -0
  1804. data/spec/hg19/transmapalnsplicedest_spec.rb +24 -0
  1805. data/spec/hg19/transmapalnucscgenes_spec.rb +24 -0
  1806. data/spec/hg19/transmapinfomrna_spec.rb +15 -0
  1807. data/spec/hg19/transmapinforefseq_spec.rb +15 -0
  1808. data/spec/hg19/transmapinfosplicedest_spec.rb +15 -0
  1809. data/spec/hg19/transmapinfoucscgenes_spec.rb +15 -0
  1810. data/spec/hg19/trnas_spec.rb +5 -4
  1811. data/spec/hg19/ucsfchipseqh3k4me3braincoverage_spec.rb +16 -0
  1812. data/spec/hg19/ucsfmedipseqbraincoverage_spec.rb +16 -0
  1813. data/spec/hg19/ucsfmedipseqbraincpg_spec.rb +16 -0
  1814. data/spec/hg19/ucsfmreseqbraincpg_spec.rb +16 -0
  1815. data/spec/hg19/ucsfrnaseqbrainallcoverage_spec.rb +16 -0
  1816. data/spec/hg19/ucsfrnaseqbrainsmartcoverage_spec.rb +16 -0
  1817. data/spec/hg19/umassbrainhistonepeaksinfant_spec.rb +16 -0
  1818. data/spec/hg19/umassbrainhistonepeaksneuron_spec.rb +16 -0
  1819. data/spec/hg19/umassbrainhistonepeakssample_spec.rb +16 -0
  1820. data/spec/hg19/vegagene_spec.rb +24 -0
  1821. data/spec/hg19/vegapseudogene_spec.rb +24 -0
  1822. data/spec/hg19/vistaenhancers_spec.rb +16 -0
  1823. data/spec/hg19/wgencodeaffyrnachipfilttransfragsgm12878celltotal_spec.rb +24 -0
  1824. data/spec/hg19/wgencodeaffyrnachipfilttransfragsgm12878cytosollongnonpolya_spec.rb +24 -0
  1825. data/spec/hg19/wgencodeaffyrnachipfilttransfragsgm12878cytosollongpolya_spec.rb +24 -0
  1826. data/spec/hg19/wgencodeaffyrnachipfilttransfragsgm12878nucleolustotal_spec.rb +24 -0
  1827. data/spec/hg19/wgencodeaffyrnachipfilttransfragsgm12878nucleuslongnonpolya_spec.rb +24 -0
  1828. data/spec/hg19/wgencodeaffyrnachipfilttransfragsgm12878nucleuslongpolya_spec.rb +24 -0
  1829. data/spec/hg19/wgencodeaffyrnachipfilttransfragshepg2cytosollongnonpolya_spec.rb +24 -0
  1830. data/spec/hg19/wgencodeaffyrnachipfilttransfragshepg2cytosollongpolya_spec.rb +24 -0
  1831. data/spec/hg19/wgencodeaffyrnachipfilttransfragshepg2nucleolustotal_spec.rb +24 -0
  1832. data/spec/hg19/wgencodeaffyrnachipfilttransfragshepg2nucleuslongnonpolya_spec.rb +24 -0
  1833. data/spec/hg19/wgencodeaffyrnachipfilttransfragshepg2nucleuslongpolya_spec.rb +24 -0
  1834. data/spec/hg19/wgencodeaffyrnachipfilttransfragsk562celltotal_spec.rb +24 -0
  1835. data/spec/hg19/wgencodeaffyrnachipfilttransfragsk562chromatintotal_spec.rb +24 -0
  1836. data/spec/hg19/wgencodeaffyrnachipfilttransfragsk562cytosollongnonpolya_spec.rb +24 -0
  1837. data/spec/hg19/wgencodeaffyrnachipfilttransfragsk562cytosollongpolya_spec.rb +24 -0
  1838. data/spec/hg19/wgencodeaffyrnachipfilttransfragsk562nucleolustotal_spec.rb +24 -0
  1839. data/spec/hg19/wgencodeaffyrnachipfilttransfragsk562nucleoplasmtotal_spec.rb +24 -0
  1840. data/spec/hg19/wgencodeaffyrnachipfilttransfragsk562nucleuslongpolya_spec.rb +24 -0
  1841. data/spec/hg19/wgencodeaffyrnachipfilttransfragsk562polysomelongnonpolya_spec.rb +24 -0
  1842. data/spec/hg19/wgencodeaffyrnachipfilttransfragskeratinocytecytosollongnonpolya_spec.rb +24 -0
  1843. data/spec/hg19/wgencodeaffyrnachipfilttransfragskeratinocytecytosollongpolya_spec.rb +24 -0
  1844. data/spec/hg19/wgencodeaffyrnachipfilttransfragskeratinocytenucleuslongnonpolya_spec.rb +24 -0
  1845. data/spec/hg19/wgencodeaffyrnachipfilttransfragskeratinocytenucleuslongpolya_spec.rb +24 -0
  1846. data/spec/hg19/wgencodeaffyrnachipfilttransfragsprostatecelllongnonpolya_spec.rb +24 -0
  1847. data/spec/hg19/wgencodeaffyrnachipfilttransfragsprostatecelllongpolya_spec.rb +24 -0
  1848. data/spec/hg19/wgencodebroadhistonegm12878ctcfstdpk_spec.rb +16 -0
  1849. data/spec/hg19/wgencodebroadhistonegm12878h2azstdpk_spec.rb +16 -0
  1850. data/spec/hg19/wgencodebroadhistonegm12878h3k27acstdpk_spec.rb +16 -0
  1851. data/spec/hg19/wgencodebroadhistonegm12878h3k27me3stdpk_spec.rb +16 -0
  1852. data/spec/hg19/wgencodebroadhistonegm12878h3k36me3stdpk_spec.rb +16 -0
  1853. data/spec/hg19/wgencodebroadhistonegm12878h3k4me1stdpk_spec.rb +16 -0
  1854. data/spec/hg19/wgencodebroadhistonegm12878h3k4me2stdpk_spec.rb +16 -0
  1855. data/spec/hg19/wgencodebroadhistonegm12878h3k4me3stdpk_spec.rb +16 -0
  1856. data/spec/hg19/wgencodebroadhistonegm12878h3k79me2stdpk_spec.rb +16 -0
  1857. data/spec/hg19/wgencodebroadhistonegm12878h3k9acstdpk_spec.rb +16 -0
  1858. data/spec/hg19/wgencodebroadhistonegm12878h3k9me3stdpk_spec.rb +16 -0
  1859. data/spec/hg19/wgencodebroadhistonegm12878h4k20me1stdpk_spec.rb +16 -0
  1860. data/spec/hg19/wgencodebroadhistoneh1hescctcfstdpk_spec.rb +16 -0
  1861. data/spec/hg19/wgencodebroadhistoneh1hesch3k27acstdpk_spec.rb +16 -0
  1862. data/spec/hg19/wgencodebroadhistoneh1hesch3k27me3stdpk_spec.rb +16 -0
  1863. data/spec/hg19/wgencodebroadhistoneh1hesch3k36me3stdpk_spec.rb +16 -0
  1864. data/spec/hg19/wgencodebroadhistoneh1hesch3k4me1stdpk_spec.rb +16 -0
  1865. data/spec/hg19/wgencodebroadhistoneh1hesch3k4me2stdpk_spec.rb +16 -0
  1866. data/spec/hg19/wgencodebroadhistoneh1hesch3k4me3stdpk_spec.rb +16 -0
  1867. data/spec/hg19/wgencodebroadhistoneh1hesch3k9acstdpk_spec.rb +16 -0
  1868. data/spec/hg19/wgencodebroadhistoneh1hesch4k20me1stdpk_spec.rb +16 -0
  1869. data/spec/hg19/wgencodebroadhistonehelas3ctcfstdpk_spec.rb +16 -0
  1870. data/spec/hg19/wgencodebroadhistonehelas3h3k27acstdpk_spec.rb +16 -0
  1871. data/spec/hg19/wgencodebroadhistonehelas3h3k27me3stdpk_spec.rb +16 -0
  1872. data/spec/hg19/wgencodebroadhistonehelas3h3k36me3stdpk_spec.rb +16 -0
  1873. data/spec/hg19/wgencodebroadhistonehelas3h3k4me2stdpk_spec.rb +16 -0
  1874. data/spec/hg19/wgencodebroadhistonehelas3h3k4me3stdpk_spec.rb +16 -0
  1875. data/spec/hg19/wgencodebroadhistonehelas3h3k79me2stdpk_spec.rb +16 -0
  1876. data/spec/hg19/wgencodebroadhistonehelas3h3k9acstdpk_spec.rb +16 -0
  1877. data/spec/hg19/wgencodebroadhistonehelas3h4k20me1stdpk_spec.rb +16 -0
  1878. data/spec/hg19/wgencodebroadhistonehelas3pol2bstdpk_spec.rb +16 -0
  1879. data/spec/hg19/wgencodebroadhistonehepg2ctcfstdpk_spec.rb +16 -0
  1880. data/spec/hg19/wgencodebroadhistonehepg2h2azstdpk_spec.rb +16 -0
  1881. data/spec/hg19/wgencodebroadhistonehepg2h3k27acstdpk_spec.rb +16 -0
  1882. data/spec/hg19/wgencodebroadhistonehepg2h3k27me3stdpk_spec.rb +16 -0
  1883. data/spec/hg19/wgencodebroadhistonehepg2h3k36me3stdpk_spec.rb +16 -0
  1884. data/spec/hg19/wgencodebroadhistonehepg2h3k4me2stdpk_spec.rb +16 -0
  1885. data/spec/hg19/wgencodebroadhistonehepg2h3k4me3stdpk_spec.rb +16 -0
  1886. data/spec/hg19/wgencodebroadhistonehepg2h3k79me2stdpk_spec.rb +16 -0
  1887. data/spec/hg19/wgencodebroadhistonehepg2h3k9acstdpk_spec.rb +16 -0
  1888. data/spec/hg19/wgencodebroadhistonehepg2h4k20me1stdpk_spec.rb +16 -0
  1889. data/spec/hg19/wgencodebroadhistonehmecctcfstdpk_spec.rb +16 -0
  1890. data/spec/hg19/wgencodebroadhistonehmech3k27acstdpk_spec.rb +16 -0
  1891. data/spec/hg19/wgencodebroadhistonehmech3k27me3stdpk_spec.rb +16 -0
  1892. data/spec/hg19/wgencodebroadhistonehmech3k36me3stdpk_spec.rb +16 -0
  1893. data/spec/hg19/wgencodebroadhistonehmech3k4me1stdpk_spec.rb +16 -0
  1894. data/spec/hg19/wgencodebroadhistonehmech3k4me2stdpk_spec.rb +16 -0
  1895. data/spec/hg19/wgencodebroadhistonehmech3k4me3stdpk_spec.rb +16 -0
  1896. data/spec/hg19/wgencodebroadhistonehmech3k9acstdpk_spec.rb +16 -0
  1897. data/spec/hg19/wgencodebroadhistonehmech4k20me1stdpk_spec.rb +16 -0
  1898. data/spec/hg19/wgencodebroadhistonehsmmctcfstdpk_spec.rb +16 -0
  1899. data/spec/hg19/wgencodebroadhistonehsmmh2azstdpk_spec.rb +16 -0
  1900. data/spec/hg19/wgencodebroadhistonehsmmh3k27acstdpk_spec.rb +16 -0
  1901. data/spec/hg19/wgencodebroadhistonehsmmh3k27me3stdpk_spec.rb +16 -0
  1902. data/spec/hg19/wgencodebroadhistonehsmmh3k36me3stdpk_spec.rb +16 -0
  1903. data/spec/hg19/wgencodebroadhistonehsmmh3k4me1stdpk_spec.rb +16 -0
  1904. data/spec/hg19/wgencodebroadhistonehsmmh3k4me2stdpk_spec.rb +16 -0
  1905. data/spec/hg19/wgencodebroadhistonehsmmh3k4me3stdpk_spec.rb +16 -0
  1906. data/spec/hg19/wgencodebroadhistonehsmmh3k79me2stdpk_spec.rb +16 -0
  1907. data/spec/hg19/wgencodebroadhistonehsmmh3k9acstdpk_spec.rb +16 -0
  1908. data/spec/hg19/wgencodebroadhistonehsmmh3k9me3stdpk_spec.rb +16 -0
  1909. data/spec/hg19/wgencodebroadhistonehsmmh4k20me1stdpk_spec.rb +16 -0
  1910. data/spec/hg19/wgencodebroadhistonehsmmtctcfstdpk_spec.rb +16 -0
  1911. data/spec/hg19/wgencodebroadhistonehsmmth2azstdpk_spec.rb +16 -0
  1912. data/spec/hg19/wgencodebroadhistonehsmmth3k27acstdpk_spec.rb +16 -0
  1913. data/spec/hg19/wgencodebroadhistonehsmmth3k36me3stdpk_spec.rb +16 -0
  1914. data/spec/hg19/wgencodebroadhistonehsmmth3k4me1stdpk_spec.rb +16 -0
  1915. data/spec/hg19/wgencodebroadhistonehsmmth3k4me2stdpk_spec.rb +16 -0
  1916. data/spec/hg19/wgencodebroadhistonehsmmth3k4me3stdpk_spec.rb +16 -0
  1917. data/spec/hg19/wgencodebroadhistonehsmmth3k79me2stdpk_spec.rb +16 -0
  1918. data/spec/hg19/wgencodebroadhistonehsmmth3k9acstdpk_spec.rb +16 -0
  1919. data/spec/hg19/wgencodebroadhistonehsmmth4k20me1stdpk_spec.rb +16 -0
  1920. data/spec/hg19/wgencodebroadhistonehuvecctcfstdpk_spec.rb +16 -0
  1921. data/spec/hg19/wgencodebroadhistonehuvech3k27acstdpk_spec.rb +16 -0
  1922. data/spec/hg19/wgencodebroadhistonehuvech3k27me3stdpk_spec.rb +16 -0
  1923. data/spec/hg19/wgencodebroadhistonehuvech3k36me3stdpk_spec.rb +16 -0
  1924. data/spec/hg19/wgencodebroadhistonehuvech3k4me1stdpk_spec.rb +16 -0
  1925. data/spec/hg19/wgencodebroadhistonehuvech3k4me2stdpk_spec.rb +16 -0
  1926. data/spec/hg19/wgencodebroadhistonehuvech3k4me3stdpk_spec.rb +16 -0
  1927. data/spec/hg19/wgencodebroadhistonehuvech3k9acstdpk_spec.rb +16 -0
  1928. data/spec/hg19/wgencodebroadhistonehuvech3k9me1stdpk_spec.rb +16 -0
  1929. data/spec/hg19/wgencodebroadhistonehuvech4k20me1stdpk_spec.rb +16 -0
  1930. data/spec/hg19/wgencodebroadhistonehuvecpol2bstdpk_spec.rb +16 -0
  1931. data/spec/hg19/wgencodebroadhistonek562ctcfstdpk_spec.rb +16 -0
  1932. data/spec/hg19/wgencodebroadhistonek562h2azstdpk_spec.rb +16 -0
  1933. data/spec/hg19/wgencodebroadhistonek562h3k27acstdpk_spec.rb +16 -0
  1934. data/spec/hg19/wgencodebroadhistonek562h3k27me3stdpk_spec.rb +16 -0
  1935. data/spec/hg19/wgencodebroadhistonek562h3k36me3stdpk_spec.rb +16 -0
  1936. data/spec/hg19/wgencodebroadhistonek562h3k4me1stdpk_spec.rb +16 -0
  1937. data/spec/hg19/wgencodebroadhistonek562h3k4me2stdpk_spec.rb +16 -0
  1938. data/spec/hg19/wgencodebroadhistonek562h3k4me3stdpk_spec.rb +16 -0
  1939. data/spec/hg19/wgencodebroadhistonek562h3k79me2stdpk_spec.rb +16 -0
  1940. data/spec/hg19/wgencodebroadhistonek562h3k9acstdpk_spec.rb +16 -0
  1941. data/spec/hg19/wgencodebroadhistonek562h3k9me1stdpk_spec.rb +16 -0
  1942. data/spec/hg19/wgencodebroadhistonek562h3k9me3stdpk_spec.rb +16 -0
  1943. data/spec/hg19/wgencodebroadhistonek562h4k20me1stdpk_spec.rb +16 -0
  1944. data/spec/hg19/wgencodebroadhistonek562pol2bstdpk_spec.rb +16 -0
  1945. data/spec/hg19/wgencodebroadhistonenhactcfstdpk_spec.rb +16 -0
  1946. data/spec/hg19/wgencodebroadhistonenhah3k27acstdpk_spec.rb +16 -0
  1947. data/spec/hg19/wgencodebroadhistonenhah3k27me3stdpk_spec.rb +16 -0
  1948. data/spec/hg19/wgencodebroadhistonenhah3k36me3stdpk_spec.rb +16 -0
  1949. data/spec/hg19/wgencodebroadhistonenhah3k4me1stdpk_spec.rb +16 -0
  1950. data/spec/hg19/wgencodebroadhistonenhah3k4me3stdpk_spec.rb +16 -0
  1951. data/spec/hg19/wgencodebroadhistonenhdfadctcfstdpk_spec.rb +16 -0
  1952. data/spec/hg19/wgencodebroadhistonenhdfadh3k27acstdpk_spec.rb +16 -0
  1953. data/spec/hg19/wgencodebroadhistonenhdfadh3k27me3stdpk_spec.rb +16 -0
  1954. data/spec/hg19/wgencodebroadhistonenhdfadh3k36me3stdpk_spec.rb +16 -0
  1955. data/spec/hg19/wgencodebroadhistonenhdfadh3k4me2stdpk_spec.rb +16 -0
  1956. data/spec/hg19/wgencodebroadhistonenhdfadh3k4me3stdpk_spec.rb +16 -0
  1957. data/spec/hg19/wgencodebroadhistonenhdfadh3k9acstdpk_spec.rb +16 -0
  1958. data/spec/hg19/wgencodebroadhistonenhekctcfstdpk_spec.rb +16 -0
  1959. data/spec/hg19/wgencodebroadhistonenhekh3k27acstdpk_spec.rb +16 -0
  1960. data/spec/hg19/wgencodebroadhistonenhekh3k27me3stdpk_spec.rb +16 -0
  1961. data/spec/hg19/wgencodebroadhistonenhekh3k36me3stdpk_spec.rb +16 -0
  1962. data/spec/hg19/wgencodebroadhistonenhekh3k4me1stdpk_spec.rb +16 -0
  1963. data/spec/hg19/wgencodebroadhistonenhekh3k4me2stdpk_spec.rb +16 -0
  1964. data/spec/hg19/wgencodebroadhistonenhekh3k4me3stdpk_spec.rb +16 -0
  1965. data/spec/hg19/wgencodebroadhistonenhekh3k9acstdpk_spec.rb +16 -0
  1966. data/spec/hg19/wgencodebroadhistonenhekh3k9me1stdpk_spec.rb +16 -0
  1967. data/spec/hg19/wgencodebroadhistonenhekh4k20me1stdpk_spec.rb +16 -0
  1968. data/spec/hg19/wgencodebroadhistonenhekpol2bstdpk_spec.rb +16 -0
  1969. data/spec/hg19/wgencodebroadhistonenhlfctcfstdpk_spec.rb +16 -0
  1970. data/spec/hg19/wgencodebroadhistonenhlfh3k27acstdpk_spec.rb +16 -0
  1971. data/spec/hg19/wgencodebroadhistonenhlfh3k27me3stdpk_spec.rb +16 -0
  1972. data/spec/hg19/wgencodebroadhistonenhlfh3k36me3stdpk_spec.rb +16 -0
  1973. data/spec/hg19/wgencodebroadhistonenhlfh3k4me1stdpk_spec.rb +16 -0
  1974. data/spec/hg19/wgencodebroadhistonenhlfh3k4me2stdpk_spec.rb +16 -0
  1975. data/spec/hg19/wgencodebroadhistonenhlfh3k4me3stdpk_spec.rb +16 -0
  1976. data/spec/hg19/wgencodebroadhistonenhlfh3k9acstdpk_spec.rb +16 -0
  1977. data/spec/hg19/wgencodebroadhistonenhlfh4k20me1stdpk_spec.rb +16 -0
  1978. data/spec/hg19/wgencodebroadhistoneosteoblctcfstdpk_spec.rb +16 -0
  1979. data/spec/hg19/wgencodebroadhistoneosteoblh2azstdpk_spec.rb +16 -0
  1980. data/spec/hg19/wgencodebroadhistoneosteoblh3k27acstdpk_spec.rb +16 -0
  1981. data/spec/hg19/wgencodebroadhistoneosteoblh3k36me3stdpk_spec.rb +16 -0
  1982. data/spec/hg19/wgencodebroadhistoneosteoblh3k4me1stdpk_spec.rb +16 -0
  1983. data/spec/hg19/wgencodebroadhistoneosteoblh3k4me2stdpk_spec.rb +16 -0
  1984. data/spec/hg19/wgencodebroadhistoneosteoblh3k9me3stdpk_spec.rb +16 -0
  1985. data/spec/hg19/wgencodegencode2wayconspseudov4.rb +24 -0
  1986. data/spec/hg19/wgencodegencodeautov4_spec.rb +24 -0
  1987. data/spec/hg19/wgencodegencodemanualv4_spec.rb +24 -0
  1988. data/spec/hg19/wgencodegencodepolyav4_spec.rb +24 -0
  1989. data/spec/hg19/wgencodehaibmethylrrbsag04449uwstamgrowprotsitesrep1_spec.rb +16 -0
  1990. data/spec/hg19/wgencodehaibmethylrrbsag04449uwstamgrowprotsitesrep2_spec.rb +16 -0
  1991. data/spec/hg19/wgencodehaibmethylrrbsag04450uwstamgrowprotsitesrep1_spec.rb +16 -0
  1992. data/spec/hg19/wgencodehaibmethylrrbsag04450uwstamgrowprotsitesrep2_spec.rb +16 -0
  1993. data/spec/hg19/wgencodehaibmethylrrbsag09309uwstamgrowprotsitesrep1_spec.rb +16 -0
  1994. data/spec/hg19/wgencodehaibmethylrrbsag09309uwstamgrowprotsitesrep2_spec.rb +16 -0
  1995. data/spec/hg19/wgencodehaibmethylrrbsag09319uwstamgrowprotsitesrep1_spec.rb +16 -0
  1996. data/spec/hg19/wgencodehaibmethylrrbsag09319uwstamgrowprotsitesrep2_spec.rb +16 -0
  1997. data/spec/hg19/wgencodehaibmethylrrbsag10803uwstamgrowprotsitesrep1_spec.rb +16 -0
  1998. data/spec/hg19/wgencodehaibmethylrrbsag10803uwstamgrowprotsitesrep2_spec.rb +16 -0
  1999. data/spec/hg19/wgencodehaibmethylrrbscmkuwstamgrowprotsitesrep1_spec.rb +16 -0
  2000. data/spec/hg19/wgencodehaibmethylrrbscmkuwstamgrowprotsitesrep2_spec.rb +16 -0
  2001. data/spec/hg19/wgencodehaibmethylrrbsfibroblopenchromgrowprotsitesrep1_spec.rb +16 -0
  2002. data/spec/hg19/wgencodehaibmethylrrbsfibroblopenchromgrowprotsitesrep2_spec.rb +16 -0
  2003. data/spec/hg19/wgencodehaibmethylrrbsgm12878hudsonalphagrowprotsitesrep1_spec.rb +16 -0
  2004. data/spec/hg19/wgencodehaibmethylrrbsgm12878hudsonalphagrowprotsitesrep2_spec.rb +16 -0
  2005. data/spec/hg19/wgencodehaibmethylrrbsgm12878ximathudsonalphagrowprotsitesrep1_spec.rb +16 -0
  2006. data/spec/hg19/wgencodehaibmethylrrbsgm12878ximathudsonalphagrowprotsitesrep2_spec.rb +16 -0
  2007. data/spec/hg19/wgencodehaibmethylrrbsgm12891hudsonalphagrowprotsitesrep1_spec.rb +16 -0
  2008. data/spec/hg19/wgencodehaibmethylrrbsgm12891hudsonalphagrowprotsitesrep2_spec.rb +16 -0
  2009. data/spec/hg19/wgencodehaibmethylrrbsgm12892hudsonalphagrowprotsitesrep1_spec.rb +16 -0
  2010. data/spec/hg19/wgencodehaibmethylrrbsgm12892hudsonalphagrowprotsitesrep2_spec.rb +16 -0
  2011. data/spec/hg19/wgencodehaibmethylrrbsgm19239openchromgrowprotsitesrep1_spec.rb +16 -0
  2012. data/spec/hg19/wgencodehaibmethylrrbsgm19239openchromgrowprotsitesrep2_spec.rb +16 -0
  2013. data/spec/hg19/wgencodehaibmethylrrbsgm19240openchromgrowprotsitesrep1_spec.rb +16 -0
  2014. data/spec/hg19/wgencodehaibmethylrrbsgm19240openchromgrowprotsitesrep2_spec.rb +16 -0
  2015. data/spec/hg19/wgencodehaibmethylrrbsh1heschudsonalphagrowprotsitesrep1_spec.rb +16 -0
  2016. data/spec/hg19/wgencodehaibmethylrrbsh1heschudsonalphagrowprotsitesrep2_spec.rb +16 -0
  2017. data/spec/hg19/wgencodehaibmethylrrbshaeuwstamgrowprotsitesrep1_spec.rb +16 -0
  2018. data/spec/hg19/wgencodehaibmethylrrbshaeuwstamgrowprotsitesrep2_spec.rb +16 -0
  2019. data/spec/hg19/wgencodehaibmethylrrbshcfuwstamgrowprotsitesrep1_spec.rb +16 -0
  2020. data/spec/hg19/wgencodehaibmethylrrbshcfuwstamgrowprotsitesrep2_spec.rb +16 -0
  2021. data/spec/hg19/wgencodehaibmethylrrbshcmuwstamgrowprotsitesrep1_spec.rb +16 -0
  2022. data/spec/hg19/wgencodehaibmethylrrbshcmuwstamgrowprotsitesrep2_spec.rb +16 -0
  2023. data/spec/hg19/wgencodehaibmethylrrbshcpeuwstamgrowprotsitesrep1_spec.rb +16 -0
  2024. data/spec/hg19/wgencodehaibmethylrrbshcpeuwstamgrowprotsitesrep2_spec.rb +16 -0
  2025. data/spec/hg19/wgencodehaibmethylrrbshct116yalegrowprotsitesrep1_spec.rb +16 -0
  2026. data/spec/hg19/wgencodehaibmethylrrbshct116yalegrowprotsitesrep2_spec.rb +16 -0
  2027. data/spec/hg19/wgencodehaibmethylrrbsheeuwstamgrowprotsitesrep1_spec.rb +16 -0
  2028. data/spec/hg19/wgencodehaibmethylrrbsheeuwstamgrowprotsitesrep2_spec.rb +16 -0
  2029. data/spec/hg19/wgencodehaibmethylrrbshek293yalegrowprotsitesrep1_spec.rb +16 -0
  2030. data/spec/hg19/wgencodehaibmethylrrbshek293yalegrowprotsitesrep2_spec.rb +16 -0
  2031. data/spec/hg19/wgencodehaibmethylrrbshelas3hudsonalphagrowprotsitesrep1_spec.rb +16 -0
  2032. data/spec/hg19/wgencodehaibmethylrrbshelas3hudsonalphagrowprotsitesrep2_spec.rb +16 -0
  2033. data/spec/hg19/wgencodehaibmethylrrbshepg2openchromgrowprotsitesrep1_spec.rb +16 -0
  2034. data/spec/hg19/wgencodehaibmethylrrbshepg2openchromgrowprotsitesrep2_spec.rb +16 -0
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  2481. data/spec/hg19/wgencodeuwdnasehcfpkrep2_spec.rb +24 -0
  2482. data/spec/hg19/wgencodeuwdnasehcmhotspotsrep1_spec.rb +24 -0
  2483. data/spec/hg19/wgencodeuwdnasehcmhotspotsrep2_spec.rb +24 -0
  2484. data/spec/hg19/wgencodeuwdnasehcmpkrep1_spec.rb +24 -0
  2485. data/spec/hg19/wgencodeuwdnasehcmpkrep2_spec.rb +24 -0
  2486. data/spec/hg19/wgencodeuwdnasehconfhotspotsrep1_spec.rb +24 -0
  2487. data/spec/hg19/wgencodeuwdnasehconfhotspotsrep2_spec.rb +24 -0
  2488. data/spec/hg19/wgencodeuwdnasehconfpkrep1_spec.rb +24 -0
  2489. data/spec/hg19/wgencodeuwdnasehconfpkrep2_spec.rb +24 -0
  2490. data/spec/hg19/wgencodeuwdnasehcpehotspotsrep1_spec.rb +24 -0
  2491. data/spec/hg19/wgencodeuwdnasehcpehotspotsrep2_spec.rb +24 -0
  2492. data/spec/hg19/wgencodeuwdnasehcpepkrep1_spec.rb +24 -0
  2493. data/spec/hg19/wgencodeuwdnasehcpepkrep2_spec.rb +24 -0
  2494. data/spec/hg19/wgencodeuwdnasehct116hotspotsrep1_spec.rb +24 -0
  2495. data/spec/hg19/wgencodeuwdnasehct116hotspotsrep2_spec.rb +24 -0
  2496. data/spec/hg19/wgencodeuwdnasehct116pkrep1_spec.rb +24 -0
  2497. data/spec/hg19/wgencodeuwdnasehct116pkrep2_spec.rb +24 -0
  2498. data/spec/hg19/wgencodeuwdnaseheehotspotsrep1_spec.rb +24 -0
  2499. data/spec/hg19/wgencodeuwdnaseheehotspotsrep2_spec.rb +24 -0
  2500. data/spec/hg19/wgencodeuwdnaseheepkrep1_spec.rb +24 -0
  2501. data/spec/hg19/wgencodeuwdnaseheepkrep2_spec.rb +24 -0
  2502. data/spec/hg19/wgencodeuwdnasehelas3hotspotsrep1_spec.rb +24 -0
  2503. data/spec/hg19/wgencodeuwdnasehelas3hotspotsrep2_spec.rb +24 -0
  2504. data/spec/hg19/wgencodeuwdnasehelas3pkrep1_spec.rb +24 -0
  2505. data/spec/hg19/wgencodeuwdnasehelas3pkrep2_spec.rb +24 -0
  2506. data/spec/hg19/wgencodeuwdnasehepg2hotspotsrep1_spec.rb +24 -0
  2507. data/spec/hg19/wgencodeuwdnasehepg2hotspotsrep2_spec.rb +24 -0
  2508. data/spec/hg19/wgencodeuwdnasehepg2pkrep1_spec.rb +24 -0
  2509. data/spec/hg19/wgencodeuwdnasehepg2pkrep2_spec.rb +24 -0
  2510. data/spec/hg19/wgencodeuwdnasehgfhotspotsrep1_spec.rb +24 -0
  2511. data/spec/hg19/wgencodeuwdnasehgfhotspotsrep2_spec.rb +24 -0
  2512. data/spec/hg19/wgencodeuwdnasehgfpkrep1_spec.rb +24 -0
  2513. data/spec/hg19/wgencodeuwdnasehgfpkrep2_spec.rb +24 -0
  2514. data/spec/hg19/wgencodeuwdnasehl60hotspotsrep1_spec.rb +24 -0
  2515. data/spec/hg19/wgencodeuwdnasehl60hotspotsrep2_spec.rb +24 -0
  2516. data/spec/hg19/wgencodeuwdnasehl60pkrep1_spec.rb +24 -0
  2517. data/spec/hg19/wgencodeuwdnasehl60pkrep2_spec.rb +24 -0
  2518. data/spec/hg19/wgencodeuwdnasehmechotspotsrep1_spec.rb +24 -0
  2519. data/spec/hg19/wgencodeuwdnasehmechotspotsrep2_spec.rb +24 -0
  2520. data/spec/hg19/wgencodeuwdnasehmecpkrep1_spec.rb +24 -0
  2521. data/spec/hg19/wgencodeuwdnasehmecpkrep2_spec.rb +24 -0
  2522. data/spec/hg19/wgencodeuwdnasehmfhotspotsrep1_spec.rb +24 -0
  2523. data/spec/hg19/wgencodeuwdnasehmfhotspotsrep2_spec.rb +24 -0
  2524. data/spec/hg19/wgencodeuwdnasehmfpkrep1_spec.rb +24 -0
  2525. data/spec/hg19/wgencodeuwdnasehmfpkrep2_spec.rb +24 -0
  2526. data/spec/hg19/wgencodeuwdnasehmvecdbladhotspotsrep1_spec.rb +24 -0
  2527. data/spec/hg19/wgencodeuwdnasehmvecdbladhotspotsrep2_spec.rb +24 -0
  2528. data/spec/hg19/wgencodeuwdnasehmvecdbladpkrep1_spec.rb +24 -0
  2529. data/spec/hg19/wgencodeuwdnasehmvecdbladpkrep2_spec.rb +24 -0
  2530. data/spec/hg19/wgencodeuwdnasehmvecdblneohotspotsrep1_spec.rb +24 -0
  2531. data/spec/hg19/wgencodeuwdnasehmvecdblneohotspotsrep2_spec.rb +24 -0
  2532. data/spec/hg19/wgencodeuwdnasehmvecdblneopkrep1_spec.rb +24 -0
  2533. data/spec/hg19/wgencodeuwdnasehmvecdblneopkrep2_spec.rb +24 -0
  2534. data/spec/hg19/wgencodeuwdnasehmvecdlyadhotspotsrep1_spec.rb +24 -0
  2535. data/spec/hg19/wgencodeuwdnasehmvecdlyadhotspotsrep2_spec.rb +24 -0
  2536. data/spec/hg19/wgencodeuwdnasehmvecdlyadpkrep1_spec.rb +24 -0
  2537. data/spec/hg19/wgencodeuwdnasehmvecdlyadpkrep2_spec.rb +24 -0
  2538. data/spec/hg19/wgencodeuwdnasehmvecdlyneohotspotsrep1_spec.rb +24 -0
  2539. data/spec/hg19/wgencodeuwdnasehmvecdlyneohotspotsrep2_spec.rb +24 -0
  2540. data/spec/hg19/wgencodeuwdnasehmvecdlyneopkrep1_spec.rb +24 -0
  2541. data/spec/hg19/wgencodeuwdnasehmvecdlyneopkrep2_spec.rb +24 -0
  2542. data/spec/hg19/wgencodeuwdnasehmvecdneohotspotsrep1_spec.rb +24 -0
  2543. data/spec/hg19/wgencodeuwdnasehmvecdneohotspotsrep2_spec.rb +24 -0
  2544. data/spec/hg19/wgencodeuwdnasehmvecdneopkrep1_spec.rb +24 -0
  2545. data/spec/hg19/wgencodeuwdnasehmvecdneopkrep2_spec.rb +24 -0
  2546. data/spec/hg19/wgencodeuwdnasehmveclblhotspotsrep1_spec.rb +24 -0
  2547. data/spec/hg19/wgencodeuwdnasehmveclblhotspotsrep2_spec.rb +24 -0
  2548. data/spec/hg19/wgencodeuwdnasehmveclblpkrep1_spec.rb +24 -0
  2549. data/spec/hg19/wgencodeuwdnasehmveclblpkrep2_spec.rb +24 -0
  2550. data/spec/hg19/wgencodeuwdnasehmvecllyhotspotsrep1_spec.rb +24 -0
  2551. data/spec/hg19/wgencodeuwdnasehmvecllyhotspotsrep2_spec.rb +24 -0
  2552. data/spec/hg19/wgencodeuwdnasehmvecllypkrep1_spec.rb +24 -0
  2553. data/spec/hg19/wgencodeuwdnasehmvecllypkrep2_spec.rb +24 -0
  2554. data/spec/hg19/wgencodeuwdnasehnpcehotspotsrep1_spec.rb +24 -0
  2555. data/spec/hg19/wgencodeuwdnasehnpcehotspotsrep2_spec.rb +24 -0
  2556. data/spec/hg19/wgencodeuwdnasehnpcepkrep1_spec.rb +24 -0
  2557. data/spec/hg19/wgencodeuwdnasehnpcepkrep2_spec.rb +24 -0
  2558. data/spec/hg19/wgencodeuwdnasehpafhotspotsrep1_spec.rb +24 -0
  2559. data/spec/hg19/wgencodeuwdnasehpafhotspotsrep2_spec.rb +24 -0
  2560. data/spec/hg19/wgencodeuwdnasehpafpkrep1_spec.rb +24 -0
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  2562. data/spec/hg19/wgencodeuwdnasehpdlfhotspotsrep1_spec.rb +24 -0
  2563. data/spec/hg19/wgencodeuwdnasehpdlfhotspotsrep2_spec.rb +24 -0
  2564. data/spec/hg19/wgencodeuwdnasehpdlfpkrep1_spec.rb +24 -0
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  2566. data/spec/hg19/wgencodeuwdnasehpfhotspotsrep1_spec.rb +24 -0
  2567. data/spec/hg19/wgencodeuwdnasehpfhotspotsrep2_spec.rb +24 -0
  2568. data/spec/hg19/wgencodeuwdnasehpfpkrep1_spec.rb +24 -0
  2569. data/spec/hg19/wgencodeuwdnasehpfpkrep2_spec.rb +24 -0
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  2572. data/spec/hg19/wgencodeuwdnasehrcepkrep1_spec.rb +24 -0
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  2574. data/spec/hg19/wgencodeuwdnasehrehotspotsrep1_spec.rb +24 -0
  2575. data/spec/hg19/wgencodeuwdnasehrehotspotsrep2_spec.rb +24 -0
  2576. data/spec/hg19/wgencodeuwdnasehrepkrep1_spec.rb +24 -0
  2577. data/spec/hg19/wgencodeuwdnasehrepkrep2_spec.rb +24 -0
  2578. data/spec/hg19/wgencodeuwdnasehrpehotspotsrep1_spec.rb +24 -0
  2579. data/spec/hg19/wgencodeuwdnasehrpehotspotsrep2_spec.rb +24 -0
  2580. data/spec/hg19/wgencodeuwdnasehrpepkrep1_spec.rb +24 -0
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  2582. data/spec/hg19/wgencodeuwdnasehuvechotspotsrep1_spec.rb +24 -0
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  2584. data/spec/hg19/wgencodeuwdnasehvmfhotspotsrep1_spec.rb +24 -0
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  2586. data/spec/hg19/wgencodeuwdnasehvmfpkrep1_spec.rb +24 -0
  2587. data/spec/hg19/wgencodeuwdnasehvmfpkrep2_spec.rb +24 -0
  2588. data/spec/hg19/wgencodeuwdnasek562hotspotsrep1_spec.rb +24 -0
  2589. data/spec/hg19/wgencodeuwdnasek562hotspotsrep2_spec.rb +24 -0
  2590. data/spec/hg19/wgencodeuwdnasek562pkrep1_spec.rb +24 -0
  2591. data/spec/hg19/wgencodeuwdnasek562pkrep2_spec.rb +24 -0
  2592. data/spec/hg19/wgencodeuwdnasemcf7hotspotsrep1_spec.rb +24 -0
  2593. data/spec/hg19/wgencodeuwdnasemcf7hotspotsrep2_spec.rb +24 -0
  2594. data/spec/hg19/wgencodeuwdnasemcf7pkrep1_spec.rb +24 -0
  2595. data/spec/hg19/wgencodeuwdnasemcf7pkrep2_spec.rb +24 -0
  2596. data/spec/hg19/wgencodeuwdnasenb4hotspotsrep1_spec.rb +24 -0
  2597. data/spec/hg19/wgencodeuwdnasenb4hotspotsrep2_spec.rb +24 -0
  2598. data/spec/hg19/wgencodeuwdnasenb4pkrep1_spec.rb +24 -0
  2599. data/spec/hg19/wgencodeuwdnasenb4pkrep2_spec.rb +24 -0
  2600. data/spec/hg19/wgencodeuwdnasenhahotspotsrep1_spec.rb +24 -0
  2601. data/spec/hg19/wgencodeuwdnasenhahotspotsrep2_spec.rb +24 -0
  2602. data/spec/hg19/wgencodeuwdnasenhapkrep1_spec.rb +24 -0
  2603. data/spec/hg19/wgencodeuwdnasenhapkrep2_spec.rb +24 -0
  2604. data/spec/hg19/wgencodeuwdnasenhdfadhotspotsrep1_spec.rb +24 -0
  2605. data/spec/hg19/wgencodeuwdnasenhdfadhotspotsrep2_spec.rb +24 -0
  2606. data/spec/hg19/wgencodeuwdnasenhdfadpkrep1_spec.rb +24 -0
  2607. data/spec/hg19/wgencodeuwdnasenhdfadpkrep2_spec.rb +24 -0
  2608. data/spec/hg19/wgencodeuwdnasenhdfneohotspotsrep1_spec.rb +24 -0
  2609. data/spec/hg19/wgencodeuwdnasenhdfneohotspotsrep2_spec.rb +24 -0
  2610. data/spec/hg19/wgencodeuwdnasenhdfneopkrep1_spec.rb +24 -0
  2611. data/spec/hg19/wgencodeuwdnasenhdfneopkrep2_spec.rb +24 -0
  2612. data/spec/hg19/wgencodeuwdnasenhekhotspotsrep1_spec.rb +24 -0
  2613. data/spec/hg19/wgencodeuwdnasenhekpkrep1_spec.rb +24 -0
  2614. data/spec/hg19/wgencodeuwdnasenhlfhotspotsrep1_spec.rb +24 -0
  2615. data/spec/hg19/wgencodeuwdnasenhlfhotspotsrep2_spec.rb +24 -0
  2616. data/spec/hg19/wgencodeuwdnasenhlfpkrep1_spec.rb +24 -0
  2617. data/spec/hg19/wgencodeuwdnasenhlfpkrep2_spec.rb +24 -0
  2618. data/spec/hg19/wgencodeuwdnasepanc1hotspotsrep1_spec.rb +24 -0
  2619. data/spec/hg19/wgencodeuwdnasepanc1hotspotsrep2_spec.rb +24 -0
  2620. data/spec/hg19/wgencodeuwdnasepanc1pkrep1_spec.rb +24 -0
  2621. data/spec/hg19/wgencodeuwdnasepanc1pkrep2_spec.rb +24 -0
  2622. data/spec/hg19/wgencodeuwdnasesaechotspotsrep1_spec.rb +24 -0
  2623. data/spec/hg19/wgencodeuwdnasesaechotspotsrep2_spec.rb +24 -0
  2624. data/spec/hg19/wgencodeuwdnasesaecpkrep1_spec.rb +24 -0
  2625. data/spec/hg19/wgencodeuwdnasesaecpkrep2_spec.rb +24 -0
  2626. data/spec/hg19/wgencodeuwdnaseskmchotspotsrep1_spec.rb +24 -0
  2627. data/spec/hg19/wgencodeuwdnaseskmchotspotsrep2_spec.rb +24 -0
  2628. data/spec/hg19/wgencodeuwdnaseskmcpkrep1_spec.rb +24 -0
  2629. data/spec/hg19/wgencodeuwdnaseskmcpkrep2_spec.rb +24 -0
  2630. data/spec/hg19/wgencodeuwdnasesknshrahotspotsrep1_spec.rb +24 -0
  2631. data/spec/hg19/wgencodeuwdnasesknshrahotspotsrep2_spec.rb +24 -0
  2632. data/spec/hg19/wgencodeuwdnasesknshrapkrep1_spec.rb +24 -0
  2633. data/spec/hg19/wgencodeuwdnasesknshrapkrep2_spec.rb +24 -0
  2634. data/spec/hg19/wgencodeuwdnaseth1hotspotsrep1_spec.rb +24 -0
  2635. data/spec/hg19/wgencodeuwdnaseth1pkrep1_spec.rb +24 -0
  2636. data/spec/hg19/wgencodeuwdnaseth2hotspotsrep1_spec.rb +24 -0
  2637. data/spec/hg19/wgencodeuwdnaseth2pkrep1_spec.rb +24 -0
  2638. data/spec/hg19/wgencodeuwhistoneag04449h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2639. data/spec/hg19/wgencodeuwhistoneag04449h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2640. data/spec/hg19/wgencodeuwhistoneag04449h3k4me3stdpkrep1_spec.rb +16 -0
  2641. data/spec/hg19/wgencodeuwhistoneag04449h3k4me3stdpkrep2_spec.rb +16 -0
  2642. data/spec/hg19/wgencodeuwhistoneag04450h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2643. data/spec/hg19/wgencodeuwhistoneag04450h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2644. data/spec/hg19/wgencodeuwhistoneag04450h3k4me3stdpkrep1_spec.rb +16 -0
  2645. data/spec/hg19/wgencodeuwhistoneag04450h3k4me3stdpkrep2_spec.rb +16 -0
  2646. data/spec/hg19/wgencodeuwhistoneag09309h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2647. data/spec/hg19/wgencodeuwhistoneag09309h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2648. data/spec/hg19/wgencodeuwhistoneag09309h3k4me3stdpkrep1_spec.rb +16 -0
  2649. data/spec/hg19/wgencodeuwhistoneag09309h3k4me3stdpkrep2_spec.rb +16 -0
  2650. data/spec/hg19/wgencodeuwhistoneag09319h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2651. data/spec/hg19/wgencodeuwhistoneag09319h3k4me3stdpkrep1_spec.rb +16 -0
  2652. data/spec/hg19/wgencodeuwhistoneag09319h3k4me3stdpkrep2_spec.rb +16 -0
  2653. data/spec/hg19/wgencodeuwhistoneag10803h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2654. data/spec/hg19/wgencodeuwhistoneag10803h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2655. data/spec/hg19/wgencodeuwhistoneag10803h3k4me3stdpkrep1_spec.rb +16 -0
  2656. data/spec/hg19/wgencodeuwhistoneag10803h3k4me3stdpkrep2_spec.rb +16 -0
  2657. data/spec/hg19/wgencodeuwhistoneaoafh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2658. data/spec/hg19/wgencodeuwhistoneaoafh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2659. data/spec/hg19/wgencodeuwhistoneaoafh3k4me3stdpkrep1_spec.rb +16 -0
  2660. data/spec/hg19/wgencodeuwhistoneaoafh3k4me3stdpkrep2_spec.rb +16 -0
  2661. data/spec/hg19/wgencodeuwhistonebjh3k27me3stdhotspotsrep1_spec.rb +16 -0
  2662. data/spec/hg19/wgencodeuwhistonebjh3k27me3stdhotspotsrep2_spec.rb +16 -0
  2663. data/spec/hg19/wgencodeuwhistonebjh3k27me3stdpkrep1_spec.rb +16 -0
  2664. data/spec/hg19/wgencodeuwhistonebjh3k27me3stdpkrep2_spec.rb +16 -0
  2665. data/spec/hg19/wgencodeuwhistonebjh3k36me3stdhotspotsrep1_spec.rb +16 -0
  2666. data/spec/hg19/wgencodeuwhistonebjh3k36me3stdhotspotsrep2_spec.rb +16 -0
  2667. data/spec/hg19/wgencodeuwhistonebjh3k36me3stdpkrep1_spec.rb +16 -0
  2668. data/spec/hg19/wgencodeuwhistonebjh3k36me3stdpkrep2_spec.rb +16 -0
  2669. data/spec/hg19/wgencodeuwhistonebjh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2670. data/spec/hg19/wgencodeuwhistonebjh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2671. data/spec/hg19/wgencodeuwhistonebjh3k4me3stdpkrep1_spec.rb +16 -0
  2672. data/spec/hg19/wgencodeuwhistonebjh3k4me3stdpkrep2_spec.rb +16 -0
  2673. data/spec/hg19/wgencodeuwhistonecaco2h3k27me3stdhotspotsrep1_spec.rb +16 -0
  2674. data/spec/hg19/wgencodeuwhistonecaco2h3k27me3stdhotspotsrep2_spec.rb +16 -0
  2675. data/spec/hg19/wgencodeuwhistonecaco2h3k27me3stdpkrep1_spec.rb +16 -0
  2676. data/spec/hg19/wgencodeuwhistonecaco2h3k27me3stdpkrep2_spec.rb +16 -0
  2677. data/spec/hg19/wgencodeuwhistonecaco2h3k36me3stdhotspotsrep1_spec.rb +16 -0
  2678. data/spec/hg19/wgencodeuwhistonecaco2h3k36me3stdhotspotsrep2_spec.rb +16 -0
  2679. data/spec/hg19/wgencodeuwhistonecaco2h3k36me3stdpkrep1_spec.rb +16 -0
  2680. data/spec/hg19/wgencodeuwhistonecaco2h3k36me3stdpkrep2_spec.rb +16 -0
  2681. data/spec/hg19/wgencodeuwhistonecaco2h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2682. data/spec/hg19/wgencodeuwhistonecaco2h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2683. data/spec/hg19/wgencodeuwhistonecaco2h3k4me3stdpkrep1_spec.rb +16 -0
  2684. data/spec/hg19/wgencodeuwhistonecaco2h3k4me3stdpkrep2_spec.rb +16 -0
  2685. data/spec/hg19/wgencodeuwhistonegm06990h3k27me3stdhotspotsrep1_spec.rb +16 -0
  2686. data/spec/hg19/wgencodeuwhistonegm06990h3k27me3stdhotspotsrep2_spec.rb +16 -0
  2687. data/spec/hg19/wgencodeuwhistonegm06990h3k27me3stdpkrep1_spec.rb +16 -0
  2688. data/spec/hg19/wgencodeuwhistonegm06990h3k27me3stdpkrep2_spec.rb +16 -0
  2689. data/spec/hg19/wgencodeuwhistonegm06990h3k36me3stdhotspotsrep1_spec.rb +16 -0
  2690. data/spec/hg19/wgencodeuwhistonegm06990h3k36me3stdhotspotsrep2_spec.rb +16 -0
  2691. data/spec/hg19/wgencodeuwhistonegm06990h3k36me3stdpkrep1_spec.rb +16 -0
  2692. data/spec/hg19/wgencodeuwhistonegm06990h3k36me3stdpkrep2_spec.rb +16 -0
  2693. data/spec/hg19/wgencodeuwhistonegm06990h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2694. data/spec/hg19/wgencodeuwhistonegm06990h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2695. data/spec/hg19/wgencodeuwhistonegm06990h3k4me3stdpkrep1_spec.rb +16 -0
  2696. data/spec/hg19/wgencodeuwhistonegm06990h3k4me3stdpkrep2_spec.rb +16 -0
  2697. data/spec/hg19/wgencodeuwhistonegm12878h3k27me3stdhotspotsrep1_spec.rb +16 -0
  2698. data/spec/hg19/wgencodeuwhistonegm12878h3k27me3stdhotspotsrep2_spec.rb +16 -0
  2699. data/spec/hg19/wgencodeuwhistonegm12878h3k27me3stdpkrep1_spec.rb +16 -0
  2700. data/spec/hg19/wgencodeuwhistonegm12878h3k27me3stdpkrep2_spec.rb +16 -0
  2701. data/spec/hg19/wgencodeuwhistonegm12878h3k36me3stdhotspotsrep1_spec.rb +16 -0
  2702. data/spec/hg19/wgencodeuwhistonegm12878h3k36me3stdhotspotsrep2_spec.rb +16 -0
  2703. data/spec/hg19/wgencodeuwhistonegm12878h3k36me3stdpkrep1_spec.rb +16 -0
  2704. data/spec/hg19/wgencodeuwhistonegm12878h3k36me3stdpkrep2_spec.rb +16 -0
  2705. data/spec/hg19/wgencodeuwhistonegm12878h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2706. data/spec/hg19/wgencodeuwhistonegm12878h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2707. data/spec/hg19/wgencodeuwhistonegm12878h3k4me3stdpkrep1_spec.rb +16 -0
  2708. data/spec/hg19/wgencodeuwhistonegm12878h3k4me3stdpkrep2_spec.rb +16 -0
  2709. data/spec/hg19/wgencodeuwhistoneh7esh3k27me3stdhotspotsrep1_spec.rb +16 -0
  2710. data/spec/hg19/wgencodeuwhistoneh7esh3k27me3stdhotspotsrep2_spec.rb +16 -0
  2711. data/spec/hg19/wgencodeuwhistoneh7esh3k27me3stdpkrep1_spec.rb +16 -0
  2712. data/spec/hg19/wgencodeuwhistoneh7esh3k27me3stdpkrep2_spec.rb +16 -0
  2713. data/spec/hg19/wgencodeuwhistoneh7esh3k36me3stdhotspotsrep1_spec.rb +16 -0
  2714. data/spec/hg19/wgencodeuwhistoneh7esh3k36me3stdhotspotsrep2_spec.rb +16 -0
  2715. data/spec/hg19/wgencodeuwhistoneh7esh3k36me3stdpkrep1_spec.rb +16 -0
  2716. data/spec/hg19/wgencodeuwhistoneh7esh3k36me3stdpkrep2_spec.rb +16 -0
  2717. data/spec/hg19/wgencodeuwhistoneh7esh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2718. data/spec/hg19/wgencodeuwhistoneh7esh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2719. data/spec/hg19/wgencodeuwhistoneh7esh3k4me3stdpkrep1_spec.rb +16 -0
  2720. data/spec/hg19/wgencodeuwhistoneh7esh3k4me3stdpkrep2_spec.rb +16 -0
  2721. data/spec/hg19/wgencodeuwhistonehasph3k4me3stdhotspotsrep1_spec.rb +16 -0
  2722. data/spec/hg19/wgencodeuwhistonehasph3k4me3stdhotspotsrep2_spec.rb +16 -0
  2723. data/spec/hg19/wgencodeuwhistonehasph3k4me3stdpkrep1_spec.rb +16 -0
  2724. data/spec/hg19/wgencodeuwhistonehasph3k4me3stdpkrep2_spec.rb +16 -0
  2725. data/spec/hg19/wgencodeuwhistonehbmech3k4me3stdhotspotsrep1_spec.rb +16 -0
  2726. data/spec/hg19/wgencodeuwhistonehbmech3k4me3stdhotspotsrep2_spec.rb +16 -0
  2727. data/spec/hg19/wgencodeuwhistonehbmech3k4me3stdpkrep1_spec.rb +16 -0
  2728. data/spec/hg19/wgencodeuwhistonehbmech3k4me3stdpkrep2_spec.rb +16 -0
  2729. data/spec/hg19/wgencodeuwhistonehcfaah3k4me3stdhotspotsrep1_spec.rb +16 -0
  2730. data/spec/hg19/wgencodeuwhistonehcfaah3k4me3stdpkrep1_spec.rb +16 -0
  2731. data/spec/hg19/wgencodeuwhistonehcfh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2732. data/spec/hg19/wgencodeuwhistonehcfh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2733. data/spec/hg19/wgencodeuwhistonehcfh3k4me3stdpkrep1_spec.rb +16 -0
  2734. data/spec/hg19/wgencodeuwhistonehcfh3k4me3stdpkrep2_spec.rb +16 -0
  2735. data/spec/hg19/wgencodeuwhistonehcmh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2736. data/spec/hg19/wgencodeuwhistonehcmh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2737. data/spec/hg19/wgencodeuwhistonehcmh3k4me3stdpkrep1_spec.rb +16 -0
  2738. data/spec/hg19/wgencodeuwhistonehcmh3k4me3stdpkrep2_spec.rb +16 -0
  2739. data/spec/hg19/wgencodeuwhistonehcpeh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2740. data/spec/hg19/wgencodeuwhistonehcpeh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2741. data/spec/hg19/wgencodeuwhistonehcpeh3k4me3stdpkrep1_spec.rb +16 -0
  2742. data/spec/hg19/wgencodeuwhistonehcpeh3k4me3stdpkrep2_spec.rb +16 -0
  2743. data/spec/hg19/wgencodeuwhistonehct116h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2744. data/spec/hg19/wgencodeuwhistonehct116h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2745. data/spec/hg19/wgencodeuwhistonehct116h3k4me3stdpkrep1_spec.rb +16 -0
  2746. data/spec/hg19/wgencodeuwhistonehct116h3k4me3stdpkrep2_spec.rb +16 -0
  2747. data/spec/hg19/wgencodeuwhistoneheeh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2748. data/spec/hg19/wgencodeuwhistoneheeh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2749. data/spec/hg19/wgencodeuwhistoneheeh3k4me3stdpkrep1_spec.rb +16 -0
  2750. data/spec/hg19/wgencodeuwhistoneheeh3k4me3stdpkrep2_spec.rb +16 -0
  2751. data/spec/hg19/wgencodeuwhistonehek293h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2752. data/spec/hg19/wgencodeuwhistonehek293h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2753. data/spec/hg19/wgencodeuwhistonehek293h3k4me3stdpkrep1_spec.rb +16 -0
  2754. data/spec/hg19/wgencodeuwhistonehek293h3k4me3stdpkrep2_spec.rb +16 -0
  2755. data/spec/hg19/wgencodeuwhistonehelas3h3k27me3stdhotspotsrep1_spec.rb +16 -0
  2756. data/spec/hg19/wgencodeuwhistonehelas3h3k27me3stdhotspotsrep2_spec.rb +16 -0
  2757. data/spec/hg19/wgencodeuwhistonehelas3h3k27me3stdpkrep1_spec.rb +16 -0
  2758. data/spec/hg19/wgencodeuwhistonehelas3h3k27me3stdpkrep2_spec.rb +16 -0
  2759. data/spec/hg19/wgencodeuwhistonehelas3h3k36me3stdhotspotsrep1_spec.rb +16 -0
  2760. data/spec/hg19/wgencodeuwhistonehelas3h3k36me3stdhotspotsrep2_spec.rb +16 -0
  2761. data/spec/hg19/wgencodeuwhistonehelas3h3k36me3stdpkrep1_spec.rb +16 -0
  2762. data/spec/hg19/wgencodeuwhistonehelas3h3k36me3stdpkrep2_spec.rb +16 -0
  2763. data/spec/hg19/wgencodeuwhistonehelas3h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2764. data/spec/hg19/wgencodeuwhistonehelas3h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2765. data/spec/hg19/wgencodeuwhistonehelas3h3k4me3stdpkrep1_spec.rb +16 -0
  2766. data/spec/hg19/wgencodeuwhistonehelas3h3k4me3stdpkrep2_spec.rb +16 -0
  2767. data/spec/hg19/wgencodeuwhistonehepg2h3k27me3stdhotspotsrep1_spec.rb +16 -0
  2768. data/spec/hg19/wgencodeuwhistonehepg2h3k27me3stdhotspotsrep2_spec.rb +16 -0
  2769. data/spec/hg19/wgencodeuwhistonehepg2h3k27me3stdpkrep1_spec.rb +16 -0
  2770. data/spec/hg19/wgencodeuwhistonehepg2h3k27me3stdpkrep2_spec.rb +16 -0
  2771. data/spec/hg19/wgencodeuwhistonehepg2h3k36me3stdhotspotsrep1_spec.rb +16 -0
  2772. data/spec/hg19/wgencodeuwhistonehepg2h3k36me3stdhotspotsrep2_spec.rb +16 -0
  2773. data/spec/hg19/wgencodeuwhistonehepg2h3k36me3stdpkrep1_spec.rb +16 -0
  2774. data/spec/hg19/wgencodeuwhistonehepg2h3k36me3stdpkrep2_spec.rb +16 -0
  2775. data/spec/hg19/wgencodeuwhistonehepg2h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2776. data/spec/hg19/wgencodeuwhistonehepg2h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2777. data/spec/hg19/wgencodeuwhistonehepg2h3k4me3stdpkrep1_spec.rb +16 -0
  2778. data/spec/hg19/wgencodeuwhistonehepg2h3k4me3stdpkrep2_spec.rb +16 -0
  2779. data/spec/hg19/wgencodeuwhistonehl60h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2780. data/spec/hg19/wgencodeuwhistonehl60h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2781. data/spec/hg19/wgencodeuwhistonehl60h3k4me3stdpkrep1_spec.rb +16 -0
  2782. data/spec/hg19/wgencodeuwhistonehl60h3k4me3stdpkrep2_spec.rb +16 -0
  2783. data/spec/hg19/wgencodeuwhistonehmech3k27me3stdhotspotsrep1_spec.rb +16 -0
  2784. data/spec/hg19/wgencodeuwhistonehmech3k27me3stdpkrep1_spec.rb +16 -0
  2785. data/spec/hg19/wgencodeuwhistonehmech3k4me3stdhotspotsrep1_spec.rb +16 -0
  2786. data/spec/hg19/wgencodeuwhistonehmech3k4me3stdhotspotsrep2_spec.rb +16 -0
  2787. data/spec/hg19/wgencodeuwhistonehmech3k4me3stdpkrep1_spec.rb +16 -0
  2788. data/spec/hg19/wgencodeuwhistonehmech3k4me3stdpkrep2_spec.rb +16 -0
  2789. data/spec/hg19/wgencodeuwhistonehmfh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2790. data/spec/hg19/wgencodeuwhistonehmfh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2791. data/spec/hg19/wgencodeuwhistonehmfh3k4me3stdpkrep1_spec.rb +16 -0
  2792. data/spec/hg19/wgencodeuwhistonehmfh3k4me3stdpkrep2_spec.rb +16 -0
  2793. data/spec/hg19/wgencodeuwhistonehpafh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2794. data/spec/hg19/wgencodeuwhistonehpafh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2795. data/spec/hg19/wgencodeuwhistonehpafh3k4me3stdpkrep1_spec.rb +16 -0
  2796. data/spec/hg19/wgencodeuwhistonehpafh3k4me3stdpkrep2_spec.rb +16 -0
  2797. data/spec/hg19/wgencodeuwhistonehpfh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2798. data/spec/hg19/wgencodeuwhistonehpfh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2799. data/spec/hg19/wgencodeuwhistonehpfh3k4me3stdpkrep1_spec.rb +16 -0
  2800. data/spec/hg19/wgencodeuwhistonehpfh3k4me3stdpkrep2_spec.rb +16 -0
  2801. data/spec/hg19/wgencodeuwhistonehreh3k27me3stdhotspotsrep1_spec.rb +16 -0
  2802. data/spec/hg19/wgencodeuwhistonehreh3k27me3stdhotspotsrep2_spec.rb +16 -0
  2803. data/spec/hg19/wgencodeuwhistonehreh3k27me3stdpkrep1_spec.rb +16 -0
  2804. data/spec/hg19/wgencodeuwhistonehreh3k27me3stdpkrep2_spec.rb +16 -0
  2805. data/spec/hg19/wgencodeuwhistonehreh3k36me3stdhotspotsrep1_spec.rb +16 -0
  2806. data/spec/hg19/wgencodeuwhistonehreh3k36me3stdhotspotsrep2_spec.rb +16 -0
  2807. data/spec/hg19/wgencodeuwhistonehreh3k36me3stdpkrep1_spec.rb +16 -0
  2808. data/spec/hg19/wgencodeuwhistonehreh3k36me3stdpkrep2_spec.rb +16 -0
  2809. data/spec/hg19/wgencodeuwhistonehreh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2810. data/spec/hg19/wgencodeuwhistonehreh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2811. data/spec/hg19/wgencodeuwhistonehreh3k4me3stdpkrep1_spec.rb +16 -0
  2812. data/spec/hg19/wgencodeuwhistonehreh3k4me3stdpkrep2_spec.rb +16 -0
  2813. data/spec/hg19/wgencodeuwhistonehrpeh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2814. data/spec/hg19/wgencodeuwhistonehrpeh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2815. data/spec/hg19/wgencodeuwhistonehrpeh3k4me3stdpkrep1_spec.rb +16 -0
  2816. data/spec/hg19/wgencodeuwhistonehrpeh3k4me3stdpkrep2_spec.rb +16 -0
  2817. data/spec/hg19/wgencodeuwhistonehuvech3k27me3stdhotspotsrep1_spec.rb +16 -0
  2818. data/spec/hg19/wgencodeuwhistonehuvech3k27me3stdhotspotsrep2_spec.rb +16 -0
  2819. data/spec/hg19/wgencodeuwhistonehuvech3k27me3stdpkrep1_spec.rb +16 -0
  2820. data/spec/hg19/wgencodeuwhistonehuvech3k27me3stdpkrep2_spec.rb +16 -0
  2821. data/spec/hg19/wgencodeuwhistonehuvech3k36me3stdhotspotsrep1_spec.rb +16 -0
  2822. data/spec/hg19/wgencodeuwhistonehuvech3k36me3stdhotspotsrep2_spec.rb +16 -0
  2823. data/spec/hg19/wgencodeuwhistonehuvech3k36me3stdpkrep1_spec.rb +16 -0
  2824. data/spec/hg19/wgencodeuwhistonehuvech3k36me3stdpkrep2_spec.rb +16 -0
  2825. data/spec/hg19/wgencodeuwhistonehuvech3k4me3stdhotspotsrep1_spec.rb +16 -0
  2826. data/spec/hg19/wgencodeuwhistonehuvech3k4me3stdhotspotsrep2_spec.rb +16 -0
  2827. data/spec/hg19/wgencodeuwhistonehuvech3k4me3stdpkrep1_spec.rb +16 -0
  2828. data/spec/hg19/wgencodeuwhistonehuvech3k4me3stdpkrep2_spec.rb +16 -0
  2829. data/spec/hg19/wgencodeuwhistonehvmfh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2830. data/spec/hg19/wgencodeuwhistonehvmfh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2831. data/spec/hg19/wgencodeuwhistonehvmfh3k4me3stdpkrep1_spec.rb +16 -0
  2832. data/spec/hg19/wgencodeuwhistonehvmfh3k4me3stdpkrep2_spec.rb +16 -0
  2833. data/spec/hg19/wgencodeuwhistonejurkath3k4me3stdhotspotsrep1_spec.rb +16 -0
  2834. data/spec/hg19/wgencodeuwhistonejurkath3k4me3stdhotspotsrep2_spec.rb +16 -0
  2835. data/spec/hg19/wgencodeuwhistonejurkath3k4me3stdpkrep1_spec.rb +16 -0
  2836. data/spec/hg19/wgencodeuwhistonejurkath3k4me3stdpkrep2_spec.rb +16 -0
  2837. data/spec/hg19/wgencodeuwhistonek562h3k27me3stdhotspotsrep1_spec.rb +16 -0
  2838. data/spec/hg19/wgencodeuwhistonek562h3k27me3stdhotspotsrep2_spec.rb +16 -0
  2839. data/spec/hg19/wgencodeuwhistonek562h3k27me3stdpkrep1_spec.rb +16 -0
  2840. data/spec/hg19/wgencodeuwhistonek562h3k27me3stdpkrep2_spec.rb +16 -0
  2841. data/spec/hg19/wgencodeuwhistonek562h3k36me3stdhotspotsrep1_spec.rb +16 -0
  2842. data/spec/hg19/wgencodeuwhistonek562h3k36me3stdhotspotsrep2_spec.rb +16 -0
  2843. data/spec/hg19/wgencodeuwhistonek562h3k36me3stdpkrep1_spec.rb +16 -0
  2844. data/spec/hg19/wgencodeuwhistonek562h3k36me3stdpkrep2_spec.rb +16 -0
  2845. data/spec/hg19/wgencodeuwhistonek562h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2846. data/spec/hg19/wgencodeuwhistonek562h3k4me3stdhotspotsrep2_spec.rb +16 -0
  2847. data/spec/hg19/wgencodeuwhistonek562h3k4me3stdpkrep1_spec.rb +16 -0
  2848. data/spec/hg19/wgencodeuwhistonek562h3k4me3stdpkrep2_spec.rb +16 -0
  2849. data/spec/hg19/wgencodeuwhistonemcf7h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2850. data/spec/hg19/wgencodeuwhistonemcf7h3k4me3stdpkrep1_spec.rb +16 -0
  2851. data/spec/hg19/wgencodeuwhistonenb4h3k4me3stdhotspotsrep1_spec.rb +16 -0
  2852. data/spec/hg19/wgencodeuwhistonenb4h3k4me3stdpkrep1_spec.rb +16 -0
  2853. data/spec/hg19/wgencodeuwhistonenhdfneoh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2854. data/spec/hg19/wgencodeuwhistonenhdfneoh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2855. data/spec/hg19/wgencodeuwhistonenhdfneoh3k4me3stdpkrep1_spec.rb +16 -0
  2856. data/spec/hg19/wgencodeuwhistonenhdfneoh3k4me3stdpkrep2_spec.rb +16 -0
  2857. data/spec/hg19/wgencodeuwhistonenhekh3k27me3stdhotspotsrep1_spec.rb +16 -0
  2858. data/spec/hg19/wgencodeuwhistonenhekh3k27me3stdhotspotsrep2_spec.rb +16 -0
  2859. data/spec/hg19/wgencodeuwhistonenhekh3k27me3stdpkrep1_spec.rb +16 -0
  2860. data/spec/hg19/wgencodeuwhistonenhekh3k27me3stdpkrep2_spec.rb +16 -0
  2861. data/spec/hg19/wgencodeuwhistonenhekh3k36me3stdhotspotsrep1_spec.rb +16 -0
  2862. data/spec/hg19/wgencodeuwhistonenhekh3k36me3stdhotspotsrep2_spec.rb +16 -0
  2863. data/spec/hg19/wgencodeuwhistonenhekh3k36me3stdpkrep1_spec.rb +16 -0
  2864. data/spec/hg19/wgencodeuwhistonenhekh3k36me3stdpkrep2_spec.rb +16 -0
  2865. data/spec/hg19/wgencodeuwhistonenhekh3k4me3stdhotspotsrep1_spec.rb +16 -0
  2866. data/spec/hg19/wgencodeuwhistonenhekh3k4me3stdhotspotsrep2_spec.rb +16 -0
  2867. data/spec/hg19/wgencodeuwhistonenhekh3k4me3stdpkrep1_spec.rb +16 -0
  2868. data/spec/hg19/wgencodeuwhistonenhekh3k4me3stdpkrep2_spec.rb +16 -0
  2869. data/spec/hg19/wgencodeuwhistonesaech3k27me3stdhotspotsrep1_spec.rb +16 -0
  2870. data/spec/hg19/wgencodeuwhistonesaech3k27me3stdhotspotsrep2_spec.rb +16 -0
  2871. data/spec/hg19/wgencodeuwhistonesaech3k27me3stdpkrep1_spec.rb +16 -0
  2872. data/spec/hg19/wgencodeuwhistonesaech3k27me3stdpkrep2_spec.rb +16 -0
  2873. data/spec/hg19/wgencodeuwhistonesaech3k36me3stdhotspotsrep1_spec.rb +16 -0
  2874. data/spec/hg19/wgencodeuwhistonesaech3k36me3stdhotspotsrep2_spec.rb +16 -0
  2875. data/spec/hg19/wgencodeuwhistonesaech3k36me3stdpkrep1_spec.rb +16 -0
  2876. data/spec/hg19/wgencodeuwhistonesaech3k36me3stdpkrep2_spec.rb +16 -0
  2877. data/spec/hg19/wgencodeuwhistonesaech3k4me3stdhotspotsrep1_spec.rb +16 -0
  2878. data/spec/hg19/wgencodeuwhistonesaech3k4me3stdhotspotsrep2_spec.rb +16 -0
  2879. data/spec/hg19/wgencodeuwhistonesaech3k4me3stdpkrep1_spec.rb +16 -0
  2880. data/spec/hg19/wgencodeuwhistonesaech3k4me3stdpkrep2_spec.rb +16 -0
  2881. data/spec/hg19/wgencodeuwhistonesknshrah3k27me3stdhotspotsrep1_spec.rb +16 -0
  2882. data/spec/hg19/wgencodeuwhistonesknshrah3k27me3stdhotspotsrep2_spec.rb +16 -0
  2883. data/spec/hg19/wgencodeuwhistonesknshrah3k27me3stdpkrep1_spec.rb +16 -0
  2884. data/spec/hg19/wgencodeuwhistonesknshrah3k27me3stdpkrep2_spec.rb +16 -0
  2885. data/spec/hg19/wgencodeuwhistonesknshrah3k36me3stdhotspotsrep1_spec.rb +16 -0
  2886. data/spec/hg19/wgencodeuwhistonesknshrah3k36me3stdhotspotsrep2_spec.rb +16 -0
  2887. data/spec/hg19/wgencodeuwhistonesknshrah3k36me3stdpkrep1_spec.rb +16 -0
  2888. data/spec/hg19/wgencodeuwhistonesknshrah3k36me3stdpkrep2_spec.rb +16 -0
  2889. data/spec/hg19/wgencodeuwhistonesknshrah3k4me3stdhotspotsrep1_spec.rb +16 -0
  2890. data/spec/hg19/wgencodeuwhistonesknshrah3k4me3stdhotspotsrep2_spec.rb +16 -0
  2891. data/spec/hg19/wgencodeuwhistonesknshrah3k4me3stdpkrep1_spec.rb +16 -0
  2892. data/spec/hg19/wgencodeuwhistonesknshrah3k4me3stdpkrep2_spec.rb +16 -0
  2893. data/spec/hg19/wgencodeuwtfbsag04449ctcfstdhotspotsrep1_spec.rb +16 -0
  2894. data/spec/hg19/wgencodeuwtfbsag04449ctcfstdhotspotsrep2_spec.rb +16 -0
  2895. data/spec/hg19/wgencodeuwtfbsag04449ctcfstdpkrep1_spec.rb +16 -0
  2896. data/spec/hg19/wgencodeuwtfbsag04449ctcfstdpkrep2_spec.rb +16 -0
  2897. data/spec/hg19/wgencodeuwtfbsag04450ctcfstdhotspotsrep1_spec.rb +16 -0
  2898. data/spec/hg19/wgencodeuwtfbsag04450ctcfstdpkrep1_spec.rb +16 -0
  2899. data/spec/hg19/wgencodeuwtfbsag09309ctcfstdhotspotsrep1_spec.rb +16 -0
  2900. data/spec/hg19/wgencodeuwtfbsag09309ctcfstdhotspotsrep2_spec.rb +16 -0
  2901. data/spec/hg19/wgencodeuwtfbsag09309ctcfstdpkrep1_spec.rb +16 -0
  2902. data/spec/hg19/wgencodeuwtfbsag09309ctcfstdpkrep2_spec.rb +16 -0
  2903. data/spec/hg19/wgencodeuwtfbsag09319ctcfstdhotspotsrep1_spec.rb +16 -0
  2904. data/spec/hg19/wgencodeuwtfbsag09319ctcfstdhotspotsrep2_spec.rb +16 -0
  2905. data/spec/hg19/wgencodeuwtfbsag09319ctcfstdpkrep1_spec.rb +16 -0
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  3037. metadata +4504 -53
  3038. data/.document +0 -5
  3039. data/.rspec +0 -2
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHreSimpleSignalRep2" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHreSimpleSignalRep2.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHreSimpleSignalRep2.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep1" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep1.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep1.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep2" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep2.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrgecSimpleSignalRep2.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep1" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep1.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep1.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep2" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep2.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep2.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep1" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep1.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep1.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep2" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep2.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmSimpleSignalRep2.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmtSimpleSignalRep1" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmtSimpleSignalRep1.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHsmmtSimpleSignalRep1.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep1" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep1.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep1.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep2" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep2.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep2.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep1" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep1.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep1.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep2" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep2.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHvmfSimpleSignalRep2.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep1" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep1.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep1.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep2" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep2.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayJurkatSimpleSignalRep2.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep1" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep1.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep1.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep2" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep2.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayK562SimpleSignalRep2.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep1" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep1.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep1.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end
@@ -0,0 +1,24 @@
1
+ require 'bio-ucsc'
2
+ describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep2" do
3
+
4
+ describe "#find_by_interval" do
5
+ context "given range chr1:1-20,000" do
6
+ it "returns an array of records" do
7
+ Bio::Ucsc::Hg19::DBConnection.default
8
+ Bio::Ucsc::Hg19::DBConnection.connect
9
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
10
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep2.find_all_by_interval(i)
11
+ r.should have(41).items
12
+ end
13
+
14
+ it 'returns a record (r.chrom == "chr1")' do
15
+ Bio::Ucsc::Hg19::DBConnection.default
16
+ Bio::Ucsc::Hg19::DBConnection.connect
17
+ i = Bio::GenomicInterval.parse("chr1:1-20,000")
18
+ r = Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayLncapSimpleSignalRep2.find_by_interval(i)
19
+ r.chrom.should == "chr1"
20
+ end
21
+ end
22
+ end
23
+
24
+ end