bio-samtools 0.5.1 → 0.5.2

data/VERSION

@@ -1 +1 @@
-0.5.1
+0.5.2

data/bio-samtools.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = "bio-samtools"
-  s.version = "0.5.1"
+  s.version = "0.5.2"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Ricardo Ramirez-Gonzalez", "Dan MacLean", "Raoul J.P. Bonnal"]
-  s.date = "2012-02-17"
+  s.date = "2012-03-14"
   s.description = "Binder of samtools for ruby, on the top of FFI. \n\n  This project was born from the need to add support of BAM files to \n  the gee_fu genome browser (http://github.com/danmaclean/gee_fu)."
   s.email = "ilpuccio.febo@gmail.com"
   s.extensions = ["ext/mkrf_conf.rb"]

data/lib/bio-samtools.rb

@@ -1,2 +1,4 @@
 require 'ffi'
-require 'bio/db/sam'
+require 'bio/db/sam'
+require 'bio/db/pileup'
+require 'bio/db/vcf'

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-samtools
 version: !ruby/object:Gem::Version
-  version: 0.5.1
+  version: 0.5.2
   prerelease: 
 platform: ruby
 authors:
@@ -11,11 +11,11 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-02-17 00:00:00.000000000 Z
+date: 2012-03-14 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: ffi
-  requirement: &2165171740 !ruby/object:Gem::Requirement
+  requirement: &2168700900 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -23,10 +23,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *2165171740
+  version_requirements: *2168700900
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &2165171260 !ruby/object:Gem::Requirement
+  requirement: &2168700160 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -34,10 +34,10 @@ dependencies:
         version: 1.4.2
   type: :runtime
   prerelease: false
-  version_requirements: *2165171260
+  version_requirements: *2168700160
 - !ruby/object:Gem::Dependency
   name: shoulda
-  requirement: &2165170760 !ruby/object:Gem::Requirement
+  requirement: &2168699180 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -45,10 +45,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2165170760
+  version_requirements: *2168699180
 - !ruby/object:Gem::Dependency
   name: bundler
-  requirement: &2165170260 !ruby/object:Gem::Requirement
+  requirement: &2168698320 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -56,10 +56,10 @@ dependencies:
         version: 1.0.0
   type: :development
   prerelease: false
-  version_requirements: *2165170260
+  version_requirements: *2168698320
 - !ruby/object:Gem::Dependency
   name: jeweler
-  requirement: &2165169660 !ruby/object:Gem::Requirement
+  requirement: &2168697320 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -67,10 +67,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2165169660
+  version_requirements: *2168697320
 - !ruby/object:Gem::Dependency
   name: rcov
-  requirement: &2165169020 !ruby/object:Gem::Requirement
+  requirement: &2168696260 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -78,10 +78,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2165169020
+  version_requirements: *2168696260
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &2165193600 !ruby/object:Gem::Requirement
+  requirement: &2168695500 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -89,10 +89,10 @@ dependencies:
         version: 1.4.2
   type: :development
   prerelease: false
-  version_requirements: *2165193600
+  version_requirements: *2168695500
 - !ruby/object:Gem::Dependency
   name: ffi
-  requirement: &2165193020 !ruby/object:Gem::Requirement
+  requirement: &2152334180 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -100,10 +100,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2165193020
+  version_requirements: *2152334180
 - !ruby/object:Gem::Dependency
   name: rdoc
-  requirement: &2165192540 !ruby/object:Gem::Requirement
+  requirement: &2152333420 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -111,7 +111,7 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2165192540
+  version_requirements: *2152333420
 description: ! "Binder of samtools for ruby, on the top of FFI. \n\n  This project
   was born from the need to add support of BAM files to \n  the gee_fu genome browser
   (http://github.com/danmaclean/gee_fu)."
@@ -310,7 +310,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: 1379127832013866857
+      hash: -37499078565960311
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: