bio-samtools 0.5.1 → 0.5.2

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Files changed (4) hide show
  1. data/VERSION +1 -1
  2. data/bio-samtools.gemspec +2 -2
  3. data/lib/bio-samtools.rb +3 -1
  4. metadata +21 -21
data/VERSION CHANGED
@@ -1 +1 @@
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- 0.5.1
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+ 0.5.2
data/bio-samtools.gemspec CHANGED
@@ -5,11 +5,11 @@
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  Gem::Specification.new do |s|
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  s.name = "bio-samtools"
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- s.version = "0.5.1"
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+ s.version = "0.5.2"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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  s.authors = ["Ricardo Ramirez-Gonzalez", "Dan MacLean", "Raoul J.P. Bonnal"]
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- s.date = "2012-02-17"
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+ s.date = "2012-03-14"
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  s.description = "Binder of samtools for ruby, on the top of FFI. \n\n This project was born from the need to add support of BAM files to \n the gee_fu genome browser (http://github.com/danmaclean/gee_fu)."
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  s.email = "ilpuccio.febo@gmail.com"
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  s.extensions = ["ext/mkrf_conf.rb"]
data/lib/bio-samtools.rb CHANGED
@@ -1,2 +1,4 @@
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  require 'ffi'
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- require 'bio/db/sam'
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+ require 'bio/db/sam'
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+ require 'bio/db/pileup'
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+ require 'bio/db/vcf'
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: bio-samtools
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  version: !ruby/object:Gem::Version
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- version: 0.5.1
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+ version: 0.5.2
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  prerelease:
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  platform: ruby
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  authors:
@@ -11,11 +11,11 @@ authors:
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2012-02-17 00:00:00.000000000 Z
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+ date: 2012-03-14 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: ffi
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- requirement: &2165171740 !ruby/object:Gem::Requirement
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+ requirement: &2168700900 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -23,10 +23,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *2165171740
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+ version_requirements: *2168700900
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  - !ruby/object:Gem::Dependency
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  name: bio
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- requirement: &2165171260 !ruby/object:Gem::Requirement
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+ requirement: &2168700160 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -34,10 +34,10 @@ dependencies:
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  version: 1.4.2
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  type: :runtime
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  prerelease: false
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- version_requirements: *2165171260
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+ version_requirements: *2168700160
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  - !ruby/object:Gem::Dependency
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  name: shoulda
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- requirement: &2165170760 !ruby/object:Gem::Requirement
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+ requirement: &2168699180 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -45,10 +45,10 @@ dependencies:
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *2165170760
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+ version_requirements: *2168699180
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  - !ruby/object:Gem::Dependency
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  name: bundler
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- requirement: &2165170260 !ruby/object:Gem::Requirement
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+ requirement: &2168698320 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -56,10 +56,10 @@ dependencies:
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  version: 1.0.0
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  type: :development
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  prerelease: false
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- version_requirements: *2165170260
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+ version_requirements: *2168698320
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  - !ruby/object:Gem::Dependency
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  name: jeweler
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- requirement: &2165169660 !ruby/object:Gem::Requirement
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+ requirement: &2168697320 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -67,10 +67,10 @@ dependencies:
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *2165169660
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+ version_requirements: *2168697320
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  - !ruby/object:Gem::Dependency
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  name: rcov
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- requirement: &2165169020 !ruby/object:Gem::Requirement
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+ requirement: &2168696260 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -78,10 +78,10 @@ dependencies:
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *2165169020
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+ version_requirements: *2168696260
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  - !ruby/object:Gem::Dependency
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  name: bio
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- requirement: &2165193600 !ruby/object:Gem::Requirement
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+ requirement: &2168695500 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -89,10 +89,10 @@ dependencies:
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  version: 1.4.2
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  type: :development
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  prerelease: false
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- version_requirements: *2165193600
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+ version_requirements: *2168695500
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  - !ruby/object:Gem::Dependency
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  name: ffi
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- requirement: &2165193020 !ruby/object:Gem::Requirement
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+ requirement: &2152334180 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -100,10 +100,10 @@ dependencies:
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *2165193020
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+ version_requirements: *2152334180
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  - !ruby/object:Gem::Dependency
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  name: rdoc
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- requirement: &2165192540 !ruby/object:Gem::Requirement
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+ requirement: &2152333420 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -111,7 +111,7 @@ dependencies:
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *2165192540
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+ version_requirements: *2152333420
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  description: ! "Binder of samtools for ruby, on the top of FFI. \n\n This project
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  was born from the need to add support of BAM files to \n the gee_fu genome browser
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  (http://github.com/danmaclean/gee_fu)."
@@ -310,7 +310,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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  version: '0'
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  segments:
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  - 0
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- hash: 1379127832013866857
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+ hash: -37499078565960311
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  none: false
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  requirements: