bio-graphics 1.0

data/samples/glyph_showcase.rb

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+require '../lib/bio-graphics'
+
+my_panel = Bio::Graphics::Panel.new(500, 1000, true)
+
+generic_track = my_panel.add_track('generic')
+directed_track = my_panel.add_track('directed',[0,1,0],'directed_generic')
+triangle_track = my_panel.add_track('triangle',[1,0,0],'triangle')
+spliced_track = my_panel.add_track('spliced',[1,0,0],'spliced')
+directed_spliced_track = my_panel.add_track('directed_spliced',[1,0,1],'directed_spliced')
+
+generic_track.add_feature('clone1','250..375', 'http://www.newsforge.com')
+generic_track.add_feature('clone2','54..124', 'http://www.thearkdb.org')
+generic_track.add_feature('clone3','100..449', 'http://www.google.com')
+
+directed_track.add_feature('marker1','50..60', 'http://www.google.com')
+directed_track.add_feature('marker2','complement(80..120)', 'http://www.sourceforge.net')
+
+triangle_track.add_feature('snp1','56')
+triangle_track.add_feature('snp2','103','http://digg.com')
+
+spliced_track.add_feature('gene1','join(34..52,109..183)','http://news.bbc.co.uk')
+spliced_track.add_feature('gene2','complement(join(170..231,264..299,350..360,409..445))')
+spliced_track.add_feature('gene3','join(134..152,209..283)')
+
+directed_spliced_track.add_feature('gene4','join(34..52,109..183)', 'http://www.vrtnieuws.net')
+directed_spliced_track.add_feature('gene5','complement(join(170..231,264..299,350..360,409..445))', 'http://bioinformatics.roslin.ac.uk')
+directed_spliced_track.add_feature('gene6','join(134..152,209..283)')
+
+my_panel.draw('glyph_showcase.png')

metadata

@@ -0,0 +1,137 @@
+--- !ruby/object:Gem::Specification 
+rubygems_version: 0.9.0
+specification_version: 1
+name: bio-graphics
+version: !ruby/object:Gem::Version 
+  version: "1.0"
+date: 2007-10-01 00:00:00 +01:00
+summary: Library for visualizing genomic regions
+require_paths: 
+- lib
+email: jan.aerts@bbsrc.ac.uk
+homepage: http://bio-graphics.rubyforge.org/
+rubyforge_project: 
+description: 
+autorequire: bio-graphics
+default_executable: 
+bindir: bin
+has_rdoc: true
+required_ruby_version: !ruby/object:Gem::Version::Requirement 
+  requirements: 
+  - - ">"
+    - !ruby/object:Gem::Version 
+      version: 0.0.0
+  version: 
+platform: ruby
+signing_key: 
+cert_chain: 
+post_install_message: 
+authors: 
+- Jan Aerts
+files: 
+- doc/images
+- doc/fr_file_index.html
+- doc/fr_class_index.html
+- doc/index.html
+- doc/fr_method_index.html
+- doc/classes
+- doc/created.rid
+- doc/files
+- doc/images/terms.svg
+- doc/images/terms.png
+- doc/images/glyph_showcase.png
+- doc/images/example.png
+- doc/classes/Bio
+- doc/classes/ImageMap.html
+- doc/classes/ImageMap
+- doc/classes/ImageMap.src
+- doc/classes/Bio.html
+- doc/classes/Bio/Graphics.html
+- doc/classes/Bio/Graphics
+- doc/classes/Bio/Graphics/Panel
+- doc/classes/Bio/Graphics/Panel.src
+- doc/classes/Bio/Graphics/Panel.html
+- doc/classes/Bio/Graphics/Panel/Track
+- doc/classes/Bio/Graphics/Panel/Ruler.html
+- doc/classes/Bio/Graphics/Panel/Track.html
+- doc/classes/Bio/Graphics/Panel/Track.src
+- doc/classes/Bio/Graphics/Panel/Ruler.src
+- doc/classes/Bio/Graphics/Panel/Track/Feature.html
+- doc/classes/Bio/Graphics/Panel/Track/Feature
+- doc/classes/Bio/Graphics/Panel/Track/Feature.src
+- doc/classes/Bio/Graphics/Panel/Track/Feature/PixelRange.src
+- doc/classes/Bio/Graphics/Panel/Track/Feature/PixelRange.html
+- doc/classes/Bio/Graphics/Panel/Track/Feature/PixelRange.src/M000015.html
+- doc/classes/Bio/Graphics/Panel/Track/Feature/PixelRange.src/M000012.html
+- doc/classes/Bio/Graphics/Panel/Track/Feature.src/M000011.html
+- doc/classes/Bio/Graphics/Panel/Track/Feature.src/M000014.html
+- doc/classes/Bio/Graphics/Panel/Track.src/M000013.html
+- doc/classes/Bio/Graphics/Panel/Track.src/M000012.html
+- doc/classes/Bio/Graphics/Panel/Track.src/M000009.html
+- doc/classes/Bio/Graphics/Panel/Track.src/M000011.html
+- doc/classes/Bio/Graphics/Panel/Track.src/M000010.html
+- doc/classes/Bio/Graphics/Panel/Track.src/M000008.html
+- doc/classes/Bio/Graphics/Panel/Ruler.src/M000015.html
+- doc/classes/Bio/Graphics/Panel/Ruler.src/M000013.html
+- doc/classes/Bio/Graphics/Panel/Ruler.src/M000009.html
+- doc/classes/Bio/Graphics/Panel/Ruler.src/M000010.html
+- doc/classes/Bio/Graphics/Panel/Ruler.src/M000008.html
+- doc/classes/Bio/Graphics/Panel/Ruler.src/M000014.html
+- doc/classes/Bio/Graphics/Panel.src/M000007.html
+- doc/classes/Bio/Graphics/Panel.src/M000005.html
+- doc/classes/Bio/Graphics/Panel.src/M000006.html
+- doc/classes/ImageMap/ImageMapElement.src
+- doc/classes/ImageMap/ImageMapElement.html
+- doc/classes/ImageMap/ImageMapElement.src/M000003.html
+- doc/classes/ImageMap/ImageMapElement.src/M000004.html
+- doc/classes/ImageMap.src/M000001.html
+- doc/classes/ImageMap.src/M000002.html
+- doc/files/lib
+- doc/files/README_DEV.html
+- doc/files/TUTORIAL.html
+- doc/files/lib/bio-graphics_rb.html
+- doc/files/lib/bio
+- doc/files/lib/bio/graphics
+- doc/files/lib/bio/graphics/panel_rb.html
+- doc/files/lib/bio/graphics/track_rb.html
+- doc/files/lib/bio/graphics/image_map_rb.html
+- doc/files/lib/bio/graphics/feature_rb.html
+- doc/files/lib/bio/graphics/ruler_rb.html
+- lib/bio
+- lib/bio-graphics.rb
+- lib/bio/graphics
+- lib/bio/graphics/panel.rb
+- lib/bio/graphics/ruler.rb
+- lib/bio/graphics/feature.rb
+- lib/bio/graphics/track.rb
+- lib/bio/graphics/image_map.rb
+- samples/arkdb_features.rb
+- samples/data.txt
+- samples/glyph_showcase.rb
+- test/unit
+- images/terms.svg
+- images/terms.png
+- images/glyph_showcase.png
+- images/example.png
+test_files: []
+
+rdoc_options: []
+
+extra_rdoc_files: []
+
+executables: []
+
+extensions: []
+
+requirements: []
+
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  name: bio
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Version::Requirement 
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: "1"
+    version: