bio-cgranges 0.0.1 → 0.0.2
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- checksums.yaml +4 -4
- data/README.md +11 -4
- data/Rakefile +0 -5
- data/ext/bio/cgranges/cgranges.c +7 -10
- data/lib/bio/cgranges/version.rb +1 -1
- metadata +3 -3
checksums.yaml
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 85f780637e2d11f0b7fac69bcf7434584c1200f0b341413da6d499ad0bd88f1a
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data.tar.gz: 98a8b1897c11d91f999f2cb2af1cf6d1a4e6f268e1ba7877d51ac6b2d771d5a2
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 4d94f5de2f40b2ca280fa508c6ba7b0784b8d11428edf9cabd084fb002c3989b7efcaf6646d0362d702d7c8ba6307c46a5565d1099907f182e0c106db4e94515
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data.tar.gz: dd98e66a0962bec279c8c39a55c5c93fdfa5705a1560830f0efe415029bfa3d8bd1c1a57f57261cedf22c2defbe8d8a65aaef453cc35fdf23ad572f5b72d6ff2
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data/README.md
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@@ -1,9 +1,9 @@
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# bio-cgranges
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[](https://badge.fury.io/rb/bio-cgranges)
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[](https://github.com/kojix2/bio-cgranges/actions/workflows/ci.yml)
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[](https://rubydoc.info/gems/bio-cgranges)
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[](https://
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[](https://kojix2.github.io/bio-cgranges/)
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Ruby bindings to [lh3/cgranges](https://github.com/lh3/cgranges).
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@@ -60,11 +60,18 @@ granges.coverage("chr1", 12, 22, mode: :contain)
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# [5, 1]
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```
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See [](https://
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See [](https://kojix2.github.io/bio-cgranges/) for details.
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## Development
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-
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```sh
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git clone https://github.com/kojix2/bio-cgranges
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bundle install
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bundle exec rake compile
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bundle exec rake test
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```
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Bug reports and pull requests are welcome on GitHub at https://github.com/kojix2/bio-cgranges.
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Do you need commit rights to this repository?
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Do you want to get admin rights and take over the project?
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data/Rakefile
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@@ -9,10 +9,6 @@ Rake::TestTask.new(:test) do |t|
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t.test_files = FileList["test/**/*_test.rb"]
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end
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require "rubocop/rake_task"
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-
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RuboCop::RakeTask.new
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-
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require "rake/extensiontask"
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task build: :compile
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@@ -34,7 +30,6 @@ task default: %i[
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compile
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remove_object_file
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test
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-
rubocop
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]
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task cleanall: %i[
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data/ext/bio/cgranges/cgranges.c
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#define NUM2INT64 NUM2LONG
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#define UINT64_2NUM ULONG2NUM
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#define INT64_2NUM LONG2NUM
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#elif
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#elif SIZEOF_LONG_LONG == SIZEOF_INT64
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#define NUM2UINT64 NUM2ULL
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#define NUM2INT64 NUM2LL
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#define UINT64_2NUM ULL2NUM
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@@ -50,15 +50,12 @@ static void cgranges_free(void *ptr);
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static size_t cgranges_memsize(const void *ptr);
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static const rb_data_type_t cgranges_type = {
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"cgranges",
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{
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-
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cgranges_memsize,
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.wrap_struct_name = "cgranges",
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.function = {
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.dfree = cgranges_free,
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.dsize = cgranges_memsize,
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},
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-
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0,
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RUBY_TYPED_FREE_IMMEDIATELY,
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.flags = RUBY_TYPED_FREE_IMMEDIATELY,
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};
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static void
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@@ -467,4 +464,4 @@ void Init_cgranges(void)
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rb_define_method(rb_CGRanges, "count_contain", cgranges_count_contain, 3);
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rb_define_method(rb_CGRanges, "coverage_overlap", cgranges_coverage_overlap, 3);
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rb_define_method(rb_CGRanges, "coverage_contain", cgranges_coverage_contain, 3);
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}
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}
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data/lib/bio/cgranges/version.rb
CHANGED
metadata
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: bio-cgranges
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version: !ruby/object:Gem::Version
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version: 0.0.
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version: 0.0.2
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platform: ruby
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authors:
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- kojix2
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2022-
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date: 2022-11-03 00:00:00.000000000 Z
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dependencies: []
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description: Genomic interval overlap queries
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email:
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@@ -31,7 +31,7 @@ files:
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- ext/bio/cgranges/extconf.rb
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- lib/bio/cgranges.rb
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- lib/bio/cgranges/version.rb
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homepage: https://github.com/
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homepage: https://github.com/kojix2/bio-cgranges
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licenses:
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- MIT
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metadata: {}
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