bio-cgranges 0.0.1 → 0.0.2

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data/README.md CHANGED
@@ -1,9 +1,9 @@
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  # bio-cgranges
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  [![Gem Version](https://badge.fury.io/rb/bio-cgranges.svg)](https://badge.fury.io/rb/bio-cgranges)
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- [![test](https://github.com/ruby-on-bioc/bio-cgranges/actions/workflows/ci.yml/badge.svg)](https://github.com/ruby-on-bioc/bio-cgranges/actions/workflows/ci.yml)
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+ [![test](https://github.com/kojix2/bio-cgranges/actions/workflows/ci.yml/badge.svg)](https://github.com/kojix2/bio-cgranges/actions/workflows/ci.yml)
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  [![docs](https://img.shields.io/badge/docs-stable-blue.svg)](https://rubydoc.info/gems/bio-cgranges)
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- [![docs](https://img.shields.io/badge/docs-latest-blue.svg)](https://ruby-on-bioc.github.io/bio-cgranges/)
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+ [![docs](https://img.shields.io/badge/docs-latest-blue.svg)](https://kojix2.github.io/bio-cgranges/)
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  Ruby bindings to [lh3/cgranges](https://github.com/lh3/cgranges).
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@@ -60,11 +60,18 @@ granges.coverage("chr1", 12, 22, mode: :contain)
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  # [5, 1]
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  ```
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- See [![docs](https://img.shields.io/badge/docs-latest-blue.svg)](https://ruby-on-bioc.github.io/bio-cgranges/) for details.
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+ See [![docs](https://img.shields.io/badge/docs-latest-blue.svg)](https://kojix2.github.io/bio-cgranges/) for details.
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  ## Development
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- Bug reports and pull requests are welcome on GitHub at https://github.com/ruby-on-bioc/bio-cgranges.
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+ ```sh
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+ git clone https://github.com/kojix2/bio-cgranges
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+ bundle install
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+ bundle exec rake compile
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+ bundle exec rake test
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+ ```
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+
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+ Bug reports and pull requests are welcome on GitHub at https://github.com/kojix2/bio-cgranges.
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  Do you need commit rights to this repository?
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  Do you want to get admin rights and take over the project?
data/Rakefile CHANGED
@@ -9,10 +9,6 @@ Rake::TestTask.new(:test) do |t|
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  t.test_files = FileList["test/**/*_test.rb"]
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  end
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- require "rubocop/rake_task"
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-
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- RuboCop::RakeTask.new
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-
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  require "rake/extensiontask"
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  task build: :compile
@@ -34,7 +30,6 @@ task default: %i[
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  compile
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  remove_object_file
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  test
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- rubocop
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  ]
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  task cleanall: %i[
@@ -32,7 +32,7 @@
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  #define NUM2INT64 NUM2LONG
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  #define UINT64_2NUM ULONG2NUM
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  #define INT64_2NUM LONG2NUM
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- #elif SIZEOF_LONGLONG == SIZEOF_INT64
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+ #elif SIZEOF_LONG_LONG == SIZEOF_INT64
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  #define NUM2UINT64 NUM2ULL
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  #define NUM2INT64 NUM2LL
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  #define UINT64_2NUM ULL2NUM
@@ -50,15 +50,12 @@ static void cgranges_free(void *ptr);
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  static size_t cgranges_memsize(const void *ptr);
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  static const rb_data_type_t cgranges_type = {
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- "cgranges",
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- {
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- 0,
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- cgranges_free,
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- cgranges_memsize,
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+ .wrap_struct_name = "cgranges",
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+ .function = {
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+ .dfree = cgranges_free,
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+ .dsize = cgranges_memsize,
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  },
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- 0,
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- 0,
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- RUBY_TYPED_FREE_IMMEDIATELY,
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+ .flags = RUBY_TYPED_FREE_IMMEDIATELY,
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  };
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  static void
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  rb_define_method(rb_CGRanges, "count_contain", cgranges_count_contain, 3);
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  rb_define_method(rb_CGRanges, "coverage_overlap", cgranges_coverage_overlap, 3);
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  rb_define_method(rb_CGRanges, "coverage_contain", cgranges_coverage_contain, 3);
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- }
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+ }
@@ -2,6 +2,6 @@
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  module Bio
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  class CGRanges
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- VERSION = "0.0.1"
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+ VERSION = "0.0.2"
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  end
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  end
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: bio-cgranges
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  version: !ruby/object:Gem::Version
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- version: 0.0.1
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+ version: 0.0.2
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  platform: ruby
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  authors:
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  - kojix2
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2022-05-15 00:00:00.000000000 Z
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+ date: 2022-11-03 00:00:00.000000000 Z
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  dependencies: []
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  description: Genomic interval overlap queries
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  email:
@@ -31,7 +31,7 @@ files:
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  - ext/bio/cgranges/extconf.rb
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  - lib/bio/cgranges.rb
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  - lib/bio/cgranges/version.rb
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- homepage: https://github.com/ruby-on-bioc/bio-cgranges
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+ homepage: https://github.com/kojix2/bio-cgranges
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  licenses:
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  - MIT
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  metadata: {}