bio-cgranges 0.0.1 → 0.0.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +11 -4
- data/Rakefile +0 -5
- data/ext/bio/cgranges/cgranges.c +7 -10
- data/lib/bio/cgranges/version.rb +1 -1
- metadata +3 -3
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 85f780637e2d11f0b7fac69bcf7434584c1200f0b341413da6d499ad0bd88f1a
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data.tar.gz: 98a8b1897c11d91f999f2cb2af1cf6d1a4e6f268e1ba7877d51ac6b2d771d5a2
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 4d94f5de2f40b2ca280fa508c6ba7b0784b8d11428edf9cabd084fb002c3989b7efcaf6646d0362d702d7c8ba6307c46a5565d1099907f182e0c106db4e94515
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data.tar.gz: dd98e66a0962bec279c8c39a55c5c93fdfa5705a1560830f0efe415029bfa3d8bd1c1a57f57261cedf22c2defbe8d8a65aaef453cc35fdf23ad572f5b72d6ff2
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data/README.md
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# bio-cgranges
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[](https://badge.fury.io/rb/bio-cgranges)
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[](https://github.com/kojix2/bio-cgranges/actions/workflows/ci.yml)
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[](https://rubydoc.info/gems/bio-cgranges)
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[](https://
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[](https://kojix2.github.io/bio-cgranges/)
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Ruby bindings to [lh3/cgranges](https://github.com/lh3/cgranges).
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@@ -60,11 +60,18 @@ granges.coverage("chr1", 12, 22, mode: :contain)
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# [5, 1]
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```
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See [](https://
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See [](https://kojix2.github.io/bio-cgranges/) for details.
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## Development
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```sh
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git clone https://github.com/kojix2/bio-cgranges
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bundle install
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bundle exec rake compile
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bundle exec rake test
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```
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Bug reports and pull requests are welcome on GitHub at https://github.com/kojix2/bio-cgranges.
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Do you need commit rights to this repository?
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Do you want to get admin rights and take over the project?
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data/Rakefile
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@@ -9,10 +9,6 @@ Rake::TestTask.new(:test) do |t|
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t.test_files = FileList["test/**/*_test.rb"]
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end
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require "rubocop/rake_task"
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RuboCop::RakeTask.new
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require "rake/extensiontask"
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task build: :compile
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compile
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remove_object_file
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test
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rubocop
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]
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task cleanall: %i[
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data/ext/bio/cgranges/cgranges.c
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#define NUM2INT64 NUM2LONG
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#define UINT64_2NUM ULONG2NUM
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#define INT64_2NUM LONG2NUM
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#elif
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#elif SIZEOF_LONG_LONG == SIZEOF_INT64
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#define NUM2UINT64 NUM2ULL
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#define NUM2INT64 NUM2LL
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#define UINT64_2NUM ULL2NUM
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@@ -50,15 +50,12 @@ static void cgranges_free(void *ptr);
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static size_t cgranges_memsize(const void *ptr);
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static const rb_data_type_t cgranges_type = {
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"cgranges",
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{
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cgranges_memsize,
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.wrap_struct_name = "cgranges",
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.function = {
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.dfree = cgranges_free,
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.dsize = cgranges_memsize,
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},
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0,
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RUBY_TYPED_FREE_IMMEDIATELY,
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.flags = RUBY_TYPED_FREE_IMMEDIATELY,
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};
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static void
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rb_define_method(rb_CGRanges, "count_contain", cgranges_count_contain, 3);
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rb_define_method(rb_CGRanges, "coverage_overlap", cgranges_coverage_overlap, 3);
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rb_define_method(rb_CGRanges, "coverage_contain", cgranges_coverage_contain, 3);
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}
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}
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data/lib/bio/cgranges/version.rb
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metadata
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: bio-cgranges
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version: !ruby/object:Gem::Version
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version: 0.0.
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version: 0.0.2
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platform: ruby
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authors:
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- kojix2
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2022-
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date: 2022-11-03 00:00:00.000000000 Z
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dependencies: []
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description: Genomic interval overlap queries
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email:
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@@ -31,7 +31,7 @@ files:
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- ext/bio/cgranges/extconf.rb
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- lib/bio/cgranges.rb
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- lib/bio/cgranges/version.rb
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homepage: https://github.com/
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homepage: https://github.com/kojix2/bio-cgranges
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licenses:
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- MIT
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metadata: {}
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