bacterial-annotator 0.3.4 → 0.3.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/bacterial-annotator/remote-ncbi.rb +3 -3
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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data.tar.gz:
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metadata.gz: 62858524bd177b9b7db9ba7f0172a8acf00e0bc8
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data.tar.gz: a0338a29fff5690cfcaea22f74449b05a59fcc19
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 5fa60b6872156f35ad82812c706e80e0500c1391cdd972d7a84a946a8f10b293b7c660017391c1346cbb5fd80be975eabe76da5dd44cc2a910e34949a7b91469
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data.tar.gz: 84eeab61552c417fef7ff7e457fdf88064475ed1a0a36be26e21a69176fe47b3c749deefed57de82eb555feb1c111893c96bd189e9e2c67da8959afaf594359b
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@@ -23,7 +23,7 @@ class RemoteNCBI
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@db = db
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end
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url = '
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url = 'https://blast.ncbi.nlm.nih.gov/Blast.cgi'\
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'?PROGRAM=blastp&BLAST_PROGRAMS=blastp'\
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'&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on'\
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'&LINK_LOC=blasthome'
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@@ -92,10 +92,10 @@ class RemoteNCBI
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end
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uri_parsed = "
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uri_parsed = "https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&RID=#{requestID}"
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puts "NCBI Blast for #{f}: #{uri_parsed}"
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return URI.parse("
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return URI.parse("https://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&RID=#{requestID}&FORMAT_TYPE=XML&FORMAT_OBJECT=Alignment&CMD=Get")
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end # end of method
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: bacterial-annotator
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version: !ruby/object:Gem::Version
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version: 0.3.
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version: 0.3.5
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platform: ruby
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authors:
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- Maxime Deraspe
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autorequire:
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bindir: bin
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cert_chain: []
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-
date:
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date: 2017-01-11 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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