bacterial-annotator 0.3.4 → 0.3.5

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 76bdda1755e5721c74d1d2207ce007d9a3b55410
-  data.tar.gz: 00adfe5d0405d2b7193be6b1e9a54826e2096946
+  metadata.gz: 62858524bd177b9b7db9ba7f0172a8acf00e0bc8
+  data.tar.gz: a0338a29fff5690cfcaea22f74449b05a59fcc19
 SHA512:
-  metadata.gz: 399f59cfe68cc7fe8abdfa822c04825ff5168dbb7a6ab4bd73dcf01d539ac47d3e6dd983fe2df0539a0f3096333d26778c1e3bd4bf96a6225a103f62377066d6
-  data.tar.gz: 7519118185f6e197cd8985e06c9fddded3a1d3c36ce00a6b9684b0b4257de00b27283043fe4167438089c0f3b60962749d4fa8378816e9fc1928b7e617e99b4d
+  metadata.gz: 5fa60b6872156f35ad82812c706e80e0500c1391cdd972d7a84a946a8f10b293b7c660017391c1346cbb5fd80be975eabe76da5dd44cc2a910e34949a7b91469
+  data.tar.gz: 84eeab61552c417fef7ff7e457fdf88064475ed1a0a36be26e21a69176fe47b3c749deefed57de82eb555feb1c111893c96bd189e9e2c67da8959afaf594359b

data/lib/bacterial-annotator/remote-ncbi.rb

@@ -23,7 +23,7 @@ class RemoteNCBI
       @db = db
     end
 
-    url = 'http://blast.ncbi.nlm.nih.gov/Blast.cgi'\
+    url = 'https://blast.ncbi.nlm.nih.gov/Blast.cgi'\
           '?PROGRAM=blastp&BLAST_PROGRAMS=blastp'\
           '&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on'\
           '&LINK_LOC=blasthome'
@@ -92,10 +92,10 @@ class RemoteNCBI
 
     end
 
-    uri_parsed = "http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&RID=#{requestID}"
+    uri_parsed = "https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&RID=#{requestID}"
     puts "NCBI Blast for #{f}: #{uri_parsed}"
 
-    return URI.parse("http://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&RID=#{requestID}&FORMAT_TYPE=XML&FORMAT_OBJECT=Alignment&CMD=Get")
+    return URI.parse("https://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&RID=#{requestID}&FORMAT_TYPE=XML&FORMAT_OBJECT=Alignment&CMD=Get")
 
   end                           # end of method
 

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: bacterial-annotator
 version: !ruby/object:Gem::Version
-  version: 0.3.4
+  version: 0.3.5
 platform: ruby
 authors:
 - Maxime Deraspe
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-10-03 00:00:00.000000000 Z
+date: 2017-01-11 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bio