bacterial-annotator 0.3.4 → 0.3.5
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- checksums.yaml +4 -4
- data/lib/bacterial-annotator/remote-ncbi.rb +3 -3
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 62858524bd177b9b7db9ba7f0172a8acf00e0bc8
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4
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+
data.tar.gz: a0338a29fff5690cfcaea22f74449b05a59fcc19
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 5fa60b6872156f35ad82812c706e80e0500c1391cdd972d7a84a946a8f10b293b7c660017391c1346cbb5fd80be975eabe76da5dd44cc2a910e34949a7b91469
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7
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+
data.tar.gz: 84eeab61552c417fef7ff7e457fdf88064475ed1a0a36be26e21a69176fe47b3c749deefed57de82eb555feb1c111893c96bd189e9e2c67da8959afaf594359b
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@@ -23,7 +23,7 @@ class RemoteNCBI
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23
23
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@db = db
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24
24
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end
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25
25
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26
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-
url = '
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26
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+
url = 'https://blast.ncbi.nlm.nih.gov/Blast.cgi'\
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27
27
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'?PROGRAM=blastp&BLAST_PROGRAMS=blastp'\
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28
28
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'&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on'\
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29
29
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'&LINK_LOC=blasthome'
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@@ -92,10 +92,10 @@ class RemoteNCBI
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92
92
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93
93
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end
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94
94
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95
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-
uri_parsed = "
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95
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+
uri_parsed = "https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&RID=#{requestID}"
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96
96
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puts "NCBI Blast for #{f}: #{uri_parsed}"
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97
97
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98
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-
return URI.parse("
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98
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+
return URI.parse("https://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&RID=#{requestID}&FORMAT_TYPE=XML&FORMAT_OBJECT=Alignment&CMD=Get")
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99
99
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100
100
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end # end of method
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101
101
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: bacterial-annotator
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.3.
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4
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+
version: 0.3.5
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Maxime Deraspe
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8
8
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autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
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11
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-
date:
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11
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+
date: 2017-01-11 00:00:00.000000000 Z
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12
12
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dependencies:
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13
13
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- !ruby/object:Gem::Dependency
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14
14
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name: bio
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