RubyGems - apex-ruby - Versions diffs - 1.0.30 → 1.0.31 - Mend

apex-ruby 1.0.30 → 1.0.31

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data/ext/apex_ext/apex_src/documentation/docsets/Apex.docset/Contents/Resources/Documents/Citations.html DELETED Viewed

@@ -1,1620 +0,0 @@
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-}
-.highlight .token.content {
-  padding: 0;
-}
-/* Nested lists in page content */
-ul ul,
-ol ol,
-ul ol,
-ol ul {
-  padding-left: 1.5em;
-  margin-top: 0.25em;
-}
-/* Page footer */
-.page-footer {
-  background: #f5f5f5;
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-.page-footer a:hover {
-  text-decoration: underline;
-}
-/* Mobile responsive */
-@media (max-width: 768px) {
-  .hamburger-menu {
-    display: flex;
-  }
-  .main-toc,
-  .sidebar {
-    transform: translateX(-100%);
-    z-index: 175;
-  }
-  .main-toc.mobile-open,
-  .sidebar.mobile-open {
-    transform: translateX(0);
-  }
-  body {
-    margin: 2rem 1rem;
-  }
-  .floating-toc {
-    left: 0;
-  }
-}
-</style></head>
-  <body class="code-highlighted">
-<div class="floating-toc" id="floating-toc">
-  <div class="floating-toc-container">
-    <div class="floating-toc-header">
-      <span>Table of Contents 🔻</span>
-    </div>
-    <div class="floating-toc-content" id="floating-toc-content">
-      <!-- Content will be populated by JavaScript -->
-    </div>
-  </div>
-</div>
-<button class="hamburger-menu" id="hamburger-menu" aria-label="Toggle navigation"></button>
-<div class="mobile-menu-overlay" id="mobile-menu-overlay"></div>
-<nav class="main-toc"><ul><li><a href="Home.html">Home</a></li><li><a href="Getting-Started.html">Getting Started</a></li><li><a href="Installation.html">Installation</a></li><li><a href="Usage.html">Usage</a></li><li><a href="Syntax.html">Syntax</a></li><li><a href="Callouts.html">Callouts</a></li><li><a href="Tables.html">Tables</a></li><li><a href="Inline-Attribute-Lists.html">Inline Attribute Lists</a></li><li><a href="Modes.html">Modes</a></li><li><a href="Quarto-Mode.html">Quarto Mode</a></li><li><a href="Command-Line-Options.html">Command Line Options</a></li><li><a href="Rendering-Markdown-In-Terminal.html">Rendering Markdown in the Terminal</a></li><li><a href="Generating-Man-Pages.html">Generating Man Pages</a></li><li><a href="Multi-File-Documents.html">Multi-file Documents</a></li><li><a href="Citations.html">Citations</a></li><li><a href="Indices.html">Indices</a></li><li><a href="Metadata-Transforms.html">Metadata Transforms</a></li><li><a href="Pandoc-Integration.html">Integrating with Pandoc</a></li><li><a href="Using-Apex-with-Jekyll.html">Using Apex with Jekyll</a></li><li><a href="Header-IDs.html">Header IDs</a></li><li><a href="C-API.html">C API</a></li><li><a href="Writing-Tests.html">Writing Tests</a></li><li><a href="Xcode-Integration.html">Xcode Integration</a></li><li><a href="Examples.html">Examples</a></li><li><a href="Plugins.html">Plugins</a></li><li><a href="Filters.html">Filters</a></li><li><a href="Troubleshooting.html">Troubleshooting</a></li><li><a href="Credits.html">Credits</a></li></ul></nav>
-    <h1 id="citations-and-bibliography">
-      Citations and&nbsp;Bibliography
-    </h1>
-<nav class="page-toc" id="page-toc-top"><ul><li><a href="#citations-and-bibliography">Citations and&nbsp;Bibliography</a><ul><li><a href="#quick-start">Quick&nbsp;Start</a></li><li><a href="#citation-syntaxes">Citation&nbsp;Syntaxes</a><ul><li><a href="#pandoc-syntax">Pandoc&nbsp;Syntax</a></li><li><a href="#multimarkdown-syntax">MultiMarkdown&nbsp;Syntax</a></li><li><a href="#mmark-syntax">mmark&nbsp;Syntax</a></li></ul></li><li><a href="#bibliography-formats">Bibliography&nbsp;Formats</a><ul><li><a href="#bibtex-bib">BibTeX&nbsp;(.bib)</a></li><li><a href="#csl-json-json">CSL JSON&nbsp;(.json)</a></li><li><a href="#csl-yaml-yml-yaml">CSL YAML (.yml,&nbsp;.yaml)</a></li></ul></li><li><a href="#specifying-bibliography">Specifying Bibliography</a><ul><li><a href="#command-line">Command&nbsp;Line</a></li><li><a href="#document-metadata">Document&nbsp;Metadata</a></li></ul></li><li><a href="#bibliography-generation">Bibliography&nbsp;Generation</a></li><li><a href="#citation-options">Citation&nbsp;Options</a><ul><li><a href="#link-citations">Link&nbsp;Citations</a></li><li><a href="#suppress-bibliography">Suppress Bibliography</a></li><li><a href="#citation-style-csl">Citation Style&nbsp;(CSL)</a></li></ul></li><li><a href="#mode-support">Mode&nbsp;Support</a></li><li><a href="#performance">Performance</a></li><li><a href="#related">Related</a></li></ul></li></ul></nav>
-    <p>
-      Apex supports citations and bibliographies with multiple syntax styles and bibliography formats. Citations are processed in <strong>MultiMarkdown</strong> and <strong>unified</strong> modes.
-    </p>
-    <h2 id="quick-start">
-      Quick&nbsp;Start
-    </h2>
-    <p>
-      <strong>1. Create a bibliography file:</strong>
-    </p>
-    <p>
-      Create a BibTeX file (<code>references.bib</code>):
-    </p>
-    <div class="highlight">
-<pre><span></span><span class="nc">@article</span><span class="p">{</span><span class="nl">doe99</span><span class="p">,</span>
-<span class="w">  </span><span class="na">author</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Doe, John}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">title</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Article Title}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">journal</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Journal Name}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">year</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{1999}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">volume</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{1}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">pages</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{1--10}</span>
-<span class="p">}</span>
-<span class="nc">@book</span><span class="p">{</span><span class="nl">smith2000</span><span class="p">,</span>
-<span class="w">  </span><span class="na">author</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Smith, Jane}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">title</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Book Title}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">publisher</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Publisher}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">year</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{2000}</span>
-<span class="p">}</span>
-    </pre>
-  </div>
-  <p>
-    <strong>2. Add citations to your document:</strong>
-  </p>
-  <div class="highlight">
-<pre><span></span>---
-<span class="gu">bibliography: references.bib</span>
-<span class="gu">---</span>
-See [@doe99] for details. Smith discusses this in [@smith2000].
-<span class="gu">## References</span>
-&lt;!-- REFERENCES --&gt;
-  </pre>
-</div>
-<p>
-  <strong>3. Process with Apex:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>apex<span class="w"> </span>document.md<span class="w"> </span>--bibliography<span class="w"> </span>references.bib
-</pre>
-</div>
-<p>
-  Or specify in metadata (as shown above) and just run:
-</p>
-<div class="highlight">
-<pre><span></span>apex<span class="w"> </span>document.md
-</pre>
-</div>
-<h2 id="citation-syntaxes">
-  Citation&nbsp;Syntaxes
-</h2>
-<p>
-  Apex supports three citation syntax styles, automatically detected in unified mode:
-</p>
-<h3 id="pandoc-syntax">
-  Pandoc&nbsp;Syntax
-</h3>
-<p>
-  Pandoc-style citations use square brackets with <code>@</code> prefix:
-</p>
-<p>
-  <strong>Basic citation:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>See [@doe99] for details.
-</pre>
-</div>
-<p>
-  <strong>Multiple citations:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>See [@doe99; <span class="ni">@smith2000</span>; <span class="ni">@smith2004</span>] for more information.
-</pre>
-</div>
-<p>
-  <strong>Author in text:</strong>
-</p>
-<div class="highlight">
-<pre><span></span><span class="ni">@smith04</span> says blah.
-</pre>
-</div>
-<p>
-  <strong>Author suppressed (year only):</strong>
-</p>
-<div class="highlight">
-<pre><span></span>Smith says blah [-@smith04].
-</pre>
-</div>
-<p>
-  <strong>With locator (page numbers):</strong>
-</p>
-<div class="highlight">
-<pre><span></span><span class="ni">@smith04</span> [p. 33] says blah.
-See <span class="ni">@doe99</span>, pp. 33-35 and <span class="ge">*passim*</span>.
-</pre>
-</div>
-<p>
-  <strong>Output:</strong>
-</p>
-<div class="highlight">
-<pre><span></span><span class="p">&lt;</span><span class="nt">p</span><span class="p">&gt;</span>See <span class="p">&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;doe99&quot;</span><span class="p">&gt;</span>(Doe, John 1999)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span> for details.<span class="p">&lt;/</span><span class="nt">p</span><span class="p">&gt;</span>
-<span class="p">&lt;</span><span class="nt">p</span><span class="p">&gt;</span>See <span class="p">&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;doe99 smith2000 smith2004&quot;</span><span class="p">&gt;</span>(Doe, John 1999; Smith, Jane 2000, 2004)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span> for more information.<span class="p">&lt;/</span><span class="nt">p</span><span class="p">&gt;</span>
-<span class="p">&lt;</span><span class="nt">p</span><span class="p">&gt;&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;smith04&quot;</span><span class="p">&gt;</span>Smith, John (2004)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span> says blah.<span class="p">&lt;/</span><span class="nt">p</span><span class="p">&gt;</span>
-<span class="p">&lt;</span><span class="nt">p</span><span class="p">&gt;</span>Smith says blah <span class="p">&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;smith04&quot;</span><span class="p">&gt;</span>(2004)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span>.<span class="p">&lt;/</span><span class="nt">p</span><span class="p">&gt;</span>
-</pre>
-</div>
-<h3 id="multimarkdown-syntax">
-  MultiMarkdown&nbsp;Syntax
-</h3>
-<p>
-  MultiMarkdown-style citations use <code>#</code> prefix:
-</p>
-<p>
-  <strong>Basic citation:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>This is a statement[#Doe:2006].
-</pre>
-</div>
-<p>
-  <strong>With locator:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>This is a statement[p. 23][#Doe:2006].
-</pre>
-</div>
-<p>
-  <strong>Empty locator:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>This is a statement[][#Doe:2006].
-</pre>
-</div>
-<p>
-  <strong>Inline citation:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>As per Doe.[#John Doe. <span class="ge">*A Totally Fake Book 1*</span>. Vanity Press, 2006.]
-</pre>
-</div>
-<p>
-  <strong>Output:</strong>
-</p>
-<div class="highlight">
-<pre><span></span><span class="p">&lt;</span><span class="nt">p</span><span class="p">&gt;</span>This is a statement<span class="p">&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;Doe:2006&quot;</span><span class="p">&gt;</span>(Doe:2006)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span>.<span class="p">&lt;/</span><span class="nt">p</span><span class="p">&gt;</span>
-<span class="p">&lt;</span><span class="nt">p</span><span class="p">&gt;</span>This is a statement[p. 23]<span class="p">&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;Doe:2006&quot;</span><span class="p">&gt;</span>(Doe:2006)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span>.<span class="p">&lt;/</span><span class="nt">p</span><span class="p">&gt;</span>
-</pre>
-</div>
-<h3 id="mmark-syntax">
-  mmark&nbsp;Syntax
-</h3>
-<p>
-  mmark-style citations use <code>@</code> prefix (similar to Pandoc but with different conventions):
-</p>
-<p>
-  <strong>Basic citation:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>This references [@RFC2535].
-</pre>
-</div>
-<p>
-  <strong>Normative citation:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>This references [@!RFC1034] (normative).
-</pre>
-</div>
-<p>
-  <strong>Multiple citations:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>Multiple citations: [@RFC1034;@RFC1035].
-</pre>
-</div>
-<p>
-  <strong>Combined reference:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>Combined reference: [@RFC1034@STD3].
-</pre>
-</div>
-<p>
-  <strong>Output:</strong>
-</p>
-<div class="highlight">
-<pre><span></span><span class="p">&lt;</span><span class="nt">p</span><span class="p">&gt;</span>This references <span class="p">&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;RFC2535&quot;</span><span class="p">&gt;</span>(RFC2535)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span>.<span class="p">&lt;/</span><span class="nt">p</span><span class="p">&gt;</span>
-<span class="p">&lt;</span><span class="nt">p</span><span class="p">&gt;</span>Multiple citations: <span class="p">&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;RFC1034&quot;</span><span class="p">&gt;</span>(RFC1034)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span>;<span class="p">&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;RFC1035&quot;</span><span class="p">&gt;</span>(RFC1035)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span>.<span class="p">&lt;/</span><span class="nt">p</span><span class="p">&gt;</span>
-</pre>
-</div>
-<h2 id="bibliography-formats">
-  Bibliography&nbsp;Formats
-</h2>
-<p>
-  Apex supports three bibliography formats:
-</p>
-<h3 id="bibtex-bib">
-  BibTeX&nbsp;(<code>.bib</code>)
-</h3>
-<p>
-  Standard BibTeX format:
-</p>
-<div class="highlight">
-<pre><span></span><span class="nc">@article</span><span class="p">{</span><span class="nl">doe99</span><span class="p">,</span>
-<span class="w">  </span><span class="na">author</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Doe, John}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">title</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Article Title}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">journal</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Journal Name}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">year</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{1999}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">volume</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{1}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">pages</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{1--10}</span>
-<span class="p">}</span>
-<span class="nc">@book</span><span class="p">{</span><span class="nl">smith2000</span><span class="p">,</span>
-<span class="w">  </span><span class="na">author</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Smith, Jane}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">title</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Book Title}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">publisher</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{Publisher}</span><span class="p">,</span>
-<span class="w">  </span><span class="na">year</span><span class="w"> </span><span class="p">=</span><span class="w"> </span><span class="s">{2000}</span>
-<span class="p">}</span>
-</pre>
-</div>
-<h3 id="csl-json-json">
-  CSL JSON&nbsp;(<code>.json</code>)
-</h3>
-<p>
-  Citation Style Language JSON format:
-</p>
-<div class="highlight">
-<pre><span></span><span class="p">[</span>
-<span class="w">  </span><span class="p">{</span>
-<span class="w">    </span><span class="nt">&quot;id&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;doe99&quot;</span><span class="p">,</span>
-<span class="w">    </span><span class="nt">&quot;type&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;article-journal&quot;</span><span class="p">,</span>
-<span class="w">    </span><span class="nt">&quot;title&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;Article Title&quot;</span><span class="p">,</span>
-<span class="w">    </span><span class="nt">&quot;author&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">[</span>
-<span class="w">      </span><span class="p">{</span>
-<span class="w">        </span><span class="nt">&quot;family&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;Doe&quot;</span><span class="p">,</span>
-<span class="w">        </span><span class="nt">&quot;given&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;John&quot;</span>
-<span class="w">      </span><span class="p">}</span>
-<span class="w">    </span><span class="p">],</span>
-<span class="w">    </span><span class="nt">&quot;container-title&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;Journal Name&quot;</span><span class="p">,</span>
-<span class="w">    </span><span class="nt">&quot;issued&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span>
-<span class="w">      </span><span class="nt">&quot;date-parts&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">[[</span><span class="mi">1999</span><span class="p">]]</span>
-<span class="w">    </span><span class="p">},</span>
-<span class="w">    </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;1&quot;</span><span class="p">,</span>
-<span class="w">    </span><span class="nt">&quot;page&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;1-10&quot;</span>
-<span class="w">  </span><span class="p">}</span>
-<span class="p">]</span>
-</pre>
-</div>
-<h3 id="csl-yaml-yml-yaml">
-  CSL YAML (<code>.yml</code>,&nbsp;<code>.yaml</code>)
-</h3>
-<p>
-  Citation Style Language YAML format:
-</p>
-<div class="highlight">
-<pre><span></span><span class="p p-Indicator">-</span><span class="w"> </span><span class="nt">id</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">doe99</span>
-<span class="w">  </span><span class="nt">type</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">article-journal</span>
-<span class="w">  </span><span class="nt">title</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">Article Title</span>
-<span class="w">  </span><span class="nt">author</span><span class="p">:</span>
-<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="nt">family</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">Doe</span>
-<span class="w">      </span><span class="nt">given</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">John</span>
-<span class="w">  </span><span class="nt">container-title</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">Journal Name</span>
-<span class="w">  </span><span class="nt">issued</span><span class="p">:</span>
-<span class="w">    </span><span class="nt">date-parts</span><span class="p">:</span>
-<span class="w">      </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">1999</span>
-<span class="w">  </span><span class="nt">volume</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">1</span>
-<span class="w">  </span><span class="nt">page</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">1-10</span>
-</pre>
-</div>
-<h2 id="specifying-bibliography">
-  Specifying Bibliography
-</h2>
-<h3 id="command-line">
-  Command&nbsp;Line
-</h3>
-<div class="highlight">
-<pre><span></span><span class="c1"># Single file</span>
-apex<span class="w"> </span>document.md<span class="w"> </span>--bibliography<span class="w"> </span>references.bib
-<span class="c1"># Multiple files</span>
-apex<span class="w"> </span>document.md<span class="w"> </span>--bibliography<span class="w"> </span>refs1.bib<span class="w"> </span>--bibliography<span class="w"> </span>refs2.bib
-<span class="c1"># With base directory</span>
-apex<span class="w"> </span>document.md<span class="w"> </span>--bibliography<span class="w"> </span>refs.bib<span class="w"> </span>--base-dir<span class="w"> </span>/path/to/docs
-</pre>
-</div>
-<h3 id="document-metadata">
-  Document&nbsp;Metadata
-</h3>
-<p>
-  <strong>YAML front matter:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>---
-<span class="gu">bibliography: references.bib</span>
-<span class="gu">---</span>
-See [@doe99] for details.
-</pre>
-</div>
-<p>
-  <strong>Multiple files:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>---
-bibliography:
-<span class="w">  </span><span class="k">-</span><span class="w"> </span>refs1.bib
-<span class="gu">  - refs2.bib</span>
-<span class="gu">---</span>
-See [@doe99] for details.
-</pre>
-</div>
-<p>
-  <strong>MultiMarkdown metadata:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>Bibliography: references.bib
-See [@doe99] for details.
-</pre>
-</div>
-<p>
-  <strong>Pandoc title block:</strong>
-</p>
-<div class="highlight">
-<pre><span></span>% Bibliography: references.bib
-See [@doe99] for details.
-</pre>
-</div>
-<h2 id="bibliography-generation">
-  Bibliography&nbsp;Generation
-</h2>
-<p>
-  Bibliography is automatically generated from all cited entries and inserted at the <code>&lt;!-- REFERENCES --&gt;</code> marker:
-</p>
-<div class="highlight">
-<pre><span></span>See [@doe99] and [@smith2000] for details.
-<span class="gu">## References</span>
-&lt;!-- REFERENCES --&gt;
-</pre>
-</div>
-<p>
-  <strong>Output:</strong>
-</p>
-<div class="highlight">
-<pre><span></span><span class="p">&lt;</span><span class="nt">p</span><span class="p">&gt;</span>See <span class="p">&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;doe99&quot;</span><span class="p">&gt;</span>(Doe, John 1999)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span> and <span class="p">&lt;</span><span class="nt">span</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;smith2000&quot;</span><span class="p">&gt;</span>(Smith, Jane 2000)<span class="p">&lt;/</span><span class="nt">span</span><span class="p">&gt;</span> for details.<span class="p">&lt;/</span><span class="nt">p</span><span class="p">&gt;</span>
-<span class="p">&lt;</span><span class="nt">h2</span><span class="p">&gt;</span>References<span class="p">&lt;/</span><span class="nt">h2</span><span class="p">&gt;</span>
-<span class="p">&lt;</span><span class="nt">div</span> <span class="na">id</span><span class="o">=</span><span class="s">&quot;refs&quot;</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;references csl-bib-body&quot;</span><span class="p">&gt;</span>
-<span class="p">&lt;</span><span class="nt">div</span> <span class="na">id</span><span class="o">=</span><span class="s">&quot;ref-doe99&quot;</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;csl-entry&quot;</span><span class="p">&gt;</span>Doe, John 1999. <span class="p">&lt;</span><span class="nt">em</span><span class="p">&gt;</span>Article Title<span class="p">&lt;/</span><span class="nt">em</span><span class="p">&gt;</span>. <span class="p">&lt;</span><span class="nt">em</span><span class="p">&gt;</span>Journal Name<span class="p">&lt;/</span><span class="nt">em</span><span class="p">&gt;</span> 1: 1--10<span class="p">&lt;/</span><span class="nt">div</span><span class="p">&gt;</span>
-<span class="p">&lt;</span><span class="nt">div</span> <span class="na">id</span><span class="o">=</span><span class="s">&quot;ref-smith2000&quot;</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;csl-entry&quot;</span><span class="p">&gt;</span>Smith, Jane 2000. <span class="p">&lt;</span><span class="nt">em</span><span class="p">&gt;</span>Book Title<span class="p">&lt;/</span><span class="nt">em</span><span class="p">&gt;</span>. Publisher<span class="p">&lt;/</span><span class="nt">div</span><span class="p">&gt;</span>
-<span class="p">&lt;/</span><span class="nt">div</span><span class="p">&gt;</span>
-</pre>
-</div>
-<p>
-  If no <code>&lt;!-- REFERENCES --&gt;</code> marker is found, the bibliography is appended to the end of the document.
-</p>
-<h2 id="citation-options">
-  Citation&nbsp;Options
-</h2>
-<h3 id="link-citations">
-  Link&nbsp;Citations
-</h3>
-<p>
-  Use <code>--link-citations</code> to make citations link to their bibliography entries:
-</p>
-<div class="highlight">
-<pre><span></span>apex<span class="w"> </span>document.md<span class="w"> </span>--bibliography<span class="w"> </span>refs.bib<span class="w"> </span>--link-citations
-</pre>
-</div>
-<p>
-  <strong>Output:</strong>
-</p>
-<div class="highlight">
-<pre><span></span><span class="p">&lt;</span><span class="nt">p</span><span class="p">&gt;</span>See <span class="p">&lt;</span><span class="nt">a</span> <span class="na">href</span><span class="o">=</span><span class="s">&quot;#ref-doe99&quot;</span> <span class="na">class</span><span class="o">=</span><span class="s">&quot;citation&quot;</span> <span class="na">data-cites</span><span class="o">=</span><span class="s">&quot;doe99&quot;</span><span class="p">&gt;</span>(Doe, John 1999)<span class="p">&lt;/</span><span class="nt">a</span><span class="p">&gt;</span> for details.<span class="p">&lt;/</span><span class="nt">p</span><span class="p">&gt;</span>
-</pre>
-</div>
-<h3 id="suppress-bibliography">
-  Suppress Bibliography
-</h3>
-<p>
-  Use <code>--no-bibliography</code> to suppress bibliography output while still processing citations:
-</p>
-<div class="highlight">
-<pre><span></span>apex<span class="w"> </span>document.md<span class="w"> </span>--bibliography<span class="w"> </span>refs.bib<span class="w"> </span>--no-bibliography
-</pre>
-</div>
-<h3 id="citation-style-csl">
-  Citation Style&nbsp;(CSL)
-</h3>
-<p>
-  Specify a Citation Style Language file to control citation and bibliography formatting:
-</p>
-<div class="highlight">
-<pre><span></span>apex<span class="w"> </span>document.md<span class="w"> </span>--bibliography<span class="w"> </span>refs.bib<span class="w"> </span>--csl<span class="w"> </span>apa.csl
-</pre>
-</div>
-<p>
-  CSL files can also be specified in metadata:
-</p>
-<div class="highlight">
-<pre><span></span>---
-bibliography: refs.bib
-<span class="gu">csl: apa.csl</span>
-<span class="gu">---</span>
-</pre>
-</div>
-<h2 id="mode-support">
-  Mode&nbsp;Support
-</h2>
-<p>
-  <strong>Unified mode:</strong>
-</p>
-<ul>
-  <li>
-    All citation syntaxes supported (auto-detected)
-  </li>
-  <li>
-    All bibliography formats supported
-  </li>
-  <li>
-    Citations enabled by default when bibliography is provided
-  </li>
-</ul>
-<p>
-  <strong>MultiMarkdown mode:</strong>
-</p>
-<ul>
-  <li>
-    MultiMarkdown citation syntax (<code>[#key]</code>)
-  </li>
-  <li>
-    All bibliography formats supported
-  </li>
-  <li>
-    Citations enabled by default when bibliography is provided
-  </li>
-</ul>
-<p>
-  <strong>CommonMark/GFM modes:</strong>
-</p>
-<ul>
-  <li>
-    Citations disabled (pure CommonMark/GFM)
-  </li>
-</ul>
-<p>
-  <strong>Kramdown mode:</strong>
-</p>
-<ul>
-  <li>
-    Citations disabled (Kramdown uses different citation system)
-  </li>
-</ul>
-<h2 id="performance">
-  Performance
-</h2>
-<p>
-  Citations are only processed when a bibliography is actually provided (via <code>--bibliography</code> flag or metadata). This ensures no performance impact when citations aren’t being used.
-</p>
-<h2 id="related">
-  Related
-</h2>
-<ul>
-  <li>
-    <a href="Command-Line-Options.html">Command Line Options</a> - Citation-related CLI flags
-  </li>
-  <li>
-    <a href="Syntax.html">Syntax</a> - Citation syntax reference
-  </li>
-  <li>
-    <a href="Modes.html">Modes</a> - Mode-specific citation support
-  </li>
-</ul>
-<script>
-// Hamburger menu functionality
-(function() {
-  function initHamburgerMenu() {
-    var hamburger = document.getElementById('hamburger-menu');
-    var sidebar = document.querySelector('.main-toc, .sidebar');
-    var overlay = document.getElementById('mobile-menu-overlay');
-    if (!hamburger || !sidebar) return;
-    function toggleMenu() {
-      var isOpen = sidebar.classList.contains('mobile-open');
-      if (isOpen) {
-        sidebar.classList.remove('mobile-open');
-        hamburger.classList.remove('active');
-        if (overlay) overlay.classList.remove('active');
-      } else {
-        sidebar.classList.add('mobile-open');
-        hamburger.classList.add('active');
-        if (overlay) overlay.classList.add('active');
-      }
-    }
-    hamburger.addEventListener('click', function(e) {
-      e.stopPropagation();
-      toggleMenu();
-    });
-    if (overlay) {
-      overlay.addEventListener('click', function() {
-        toggleMenu();
-      });
-    }
-    // Close menu when clicking on a sidebar link (mobile only)
-    if (window.innerWidth <= 768) {
-      var sidebarLinks = sidebar.querySelectorAll('a');
-      sidebarLinks.forEach(function(link) {
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-        sidebar.classList.remove('mobile-open');
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-        if (overlay) overlay.classList.remove('active');
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-    document.addEventListener('DOMContentLoaded', initHamburgerMenu);
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-      var floatingTOC = document.getElementById('floating-toc');
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-              var scrollTop = window.pageYOffset || document.documentElement.scrollTop;
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-<footer class="page-footer"><p>Copyright 2025 Brett Terpstra, All Rights Reserved | MIT License</p></footer></body>
-</html>