anonymizer 0.0.0
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- data/.gitignore +2 -0
- data/Manifest +13 -0
- data/README.rdoc +0 -0
- data/Rakefile +30 -0
- data/VERSION +1 -0
- data/anonymizer-0.1.0.gem +0 -0
- data/anonymizer.gemspec +62 -0
- data/bin/anonymize_data.rb +51 -0
- data/doc/classes/Anonymizer.html +227 -0
- data/doc/classes/Anonymizer.src/M000003.html +20 -0
- data/doc/classes/Anonymizer.src/M000004.html +24 -0
- data/doc/classes/Anonymizer.src/M000005.html +24 -0
- data/doc/classes/Array.html +166 -0
- data/doc/classes/Array.src/M000001.html +18 -0
- data/doc/classes/Array.src/M000002.html +18 -0
- data/doc/created.rid +1 -0
- data/doc/files/bin/anonymize_data_rb.html +109 -0
- data/doc/files/lib/anonymizer_rb.html +109 -0
- data/doc/fr_class_index.html +28 -0
- data/doc/fr_file_index.html +28 -0
- data/doc/fr_method_index.html +31 -0
- data/doc/index.html +24 -0
- data/doc/rdoc-style.css +208 -0
- data/lib/anonymizer.rb +118 -0
- metadata +78 -0
data/.gitignore
ADDED
data/Manifest
ADDED
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anonymizer.gemspec
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bin/anonymize_data.rb
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lib/anonymizer.rb
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Manifest
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Rakefile
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README.rdoc
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test/out_2/0/ddd.txt
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test/out_2/1.txt
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test/out_2/2/bbb.txt
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test/out_2/3/ccc.txt
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test/out_2/4/eee.txt
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test/out_2/5/aaa.txt
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test/out_2/keymap.csv
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data/README.rdoc
ADDED
File without changes
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data/Rakefile
ADDED
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require 'rubygems'
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require 'rake'
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begin
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require 'jeweler'
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Jeweler::Tasks.new do |gemspec|
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gemspec.name = "anonymizer"
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gemspec.summary = "Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like."
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gemspec.description = "Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like."
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gemspec.email = "kk4@medicine.wisc.edu"
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gemspec.homepage = "http://github.com/brainmap/anonymizer"
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gemspec.authors = ["Kristopher J. Kosmatka"]
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end
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Jeweler::GemcutterTasks.new
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rescue LoadError
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puts "Jeweler not available. Install it with: sudo gem install jeweler"
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end
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#Echoe.new('anonymizer', '0.1.0') do |p|
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# p.description = "Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like."
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# p.url = "http://github.com/kjkosmatka/anonymizer"
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# p.author = "Kristopher J. Kosmatka"
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# p.email = "kk4@medicine.wisc.edu"
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# p.ignore_pattern = ["test/out*"]
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# p.development_dependencies = []
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#end
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data/VERSION
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0.0.0
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Binary file
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data/anonymizer.gemspec
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# Generated by jeweler
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# DO NOT EDIT THIS FILE DIRECTLY
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# Instead, edit Jeweler::Tasks in Rakefile, and run the gemspec command
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# -*- encoding: utf-8 -*-
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Gem::Specification.new do |s|
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s.name = %q{anonymizer}
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s.version = "0.0.0"
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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s.authors = ["Kristopher J. Kosmatka"]
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s.date = %q{2009-12-10}
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s.default_executable = %q{anonymize_data.rb}
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s.description = %q{Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like.}
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s.email = %q{kk4@medicine.wisc.edu}
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s.executables = ["anonymize_data.rb"]
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s.extra_rdoc_files = [
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"README.rdoc"
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]
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s.files = [
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".gitignore",
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"Manifest",
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"README.rdoc",
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"Rakefile",
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"VERSION",
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"anonymizer-0.1.0.gem",
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"anonymizer.gemspec",
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"bin/anonymize_data.rb",
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"doc/classes/Anonymizer.html",
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"doc/classes/Anonymizer.src/M000003.html",
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"doc/classes/Anonymizer.src/M000004.html",
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"doc/classes/Anonymizer.src/M000005.html",
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"doc/classes/Array.html",
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"doc/classes/Array.src/M000001.html",
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"doc/classes/Array.src/M000002.html",
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"doc/created.rid",
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"doc/files/bin/anonymize_data_rb.html",
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"doc/files/lib/anonymizer_rb.html",
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"doc/fr_class_index.html",
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"doc/fr_file_index.html",
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"doc/fr_method_index.html",
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"doc/index.html",
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"doc/rdoc-style.css",
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"lib/anonymizer.rb"
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]
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s.homepage = %q{http://github.com/brainmap/anonymizer}
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s.rdoc_options = ["--charset=UTF-8"]
|
48
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s.require_paths = ["lib"]
|
49
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s.rubygems_version = %q{1.3.5}
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s.summary = %q{Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like.}
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51
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|
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if s.respond_to? :specification_version then
|
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current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
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s.specification_version = 3
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if Gem::Version.new(Gem::RubyGemsVersion) >= Gem::Version.new('1.2.0') then
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else
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end
|
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else
|
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end
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end
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#!/usr/bin/env ruby
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$:.unshift File.join(File.dirname(__FILE__),'..','lib')
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require 'optparse'
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require 'anonymizer'
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options = Hash.new
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options[:collection] = Array.new
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options[:options_for_record_to] = Hash.new
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OptionParser.new do |opts|
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opts.banner = "Usage: anonymize_data.rb [options]"
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opts.on("-d", "--destination <directory>", "Destination directory in which anonymized data should be save") do |d|
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options[:destination] = d
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end
|
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opts.on("-c", '--collection "<list>"', "A collection of files and/or directories to anonymize, seperate with spaces. Quotes are necessary.") do |c|
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options[:collection] += c.split
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19
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end
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opts.on("-g", '--glob "<pattern>"', "Use a shell globbing pattern to select your collection. Quotes are neccessary.") do |g|
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options[:collection] += Dir.glob(g)
|
22
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end
|
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opts.on("--include-csv","Write a csv formatted keymap file in addition to the yaml file.") do |i|
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options[:options_for_record_to][:include_csv] = true
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end
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opts.on("-k","--keymap-name <basename>","Use an alternative file basename (i.e. without extension) for the keymap file.") do |k|
|
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options[:options_for_record_to][:keymap_name] = k
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28
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end
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end.parse!
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raise(IndexError, "No items specified to anonymize. Check your glob pattern or explicitly list your items using -c.") if options[:collection].empty?
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34
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|
35
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puts "Anonymizing:"
|
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options[:collection].each do |i|
|
37
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puts "\t#{i}"
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38
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end
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puts "To:"
|
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puts "\t#{options[:destination]}"
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41
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|
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begin
|
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a = Anonymizer.new(options[:collection])
|
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a.record_to(options[:destination], options[:options_for_record_to])
|
45
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rescue
|
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puts "There was an unknown problem with anonymization. Sorry."
|
47
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exit 1
|
48
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end
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|
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puts "+++ Successfully Anonymized. +++\n"
|
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exit 0
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<?xml version="1.0" encoding="iso-8859-1"?>
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<!DOCTYPE html
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PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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<head>
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<title>Class: Anonymizer</title>
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<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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<meta http-equiv="Content-Script-Type" content="text/javascript" />
|
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<link rel="stylesheet" href=".././rdoc-style.css" type="text/css" media="screen" />
|
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<script type="text/javascript">
|
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// <![CDATA[
|
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+
|
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function popupCode( url ) {
|
16
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window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
|
17
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}
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|
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function toggleCode( id ) {
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if ( document.getElementById )
|
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elem = document.getElementById( id );
|
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else if ( document.all )
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elem = eval( "document.all." + id );
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else
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return false;
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elemStyle = elem.style;
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if ( elemStyle.display != "block" ) {
|
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elemStyle.display = "block"
|
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} else {
|
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elemStyle.display = "none"
|
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}
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|
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return true;
|
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}
|
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|
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// Make codeblocks hidden by default
|
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document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
|
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|
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// ]]>
|
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</script>
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|
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</head>
|
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<body>
|
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|
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|
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|
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<div id="classHeader">
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<table class="header-table">
|
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<tr class="top-aligned-row">
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<td><strong>Class</strong></td>
|
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<td class="class-name-in-header">Anonymizer</td>
|
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</tr>
|
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<tr class="top-aligned-row">
|
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<td><strong>In:</strong></td>
|
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<td>
|
58
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<a href="../files/lib/anonymizer_rb.html">
|
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lib/anonymizer.rb
|
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</a>
|
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<br />
|
62
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</td>
|
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</tr>
|
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+
|
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<tr class="top-aligned-row">
|
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<td><strong>Parent:</strong></td>
|
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<td>
|
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Object
|
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</td>
|
70
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</tr>
|
71
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</table>
|
72
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+
</div>
|
73
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+
<!-- banner header -->
|
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+
|
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<div id="bodyContent">
|
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+
|
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|
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|
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<div id="contextContent">
|
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+
|
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|
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+
|
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</div>
|
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+
|
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<div id="method-list">
|
86
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<h3 class="section-bar">Methods</h3>
|
87
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+
|
88
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<div class="name-list">
|
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<a href="#M000004">anonymize</a>
|
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<a href="#M000003">new</a>
|
91
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<a href="#M000005">record_to</a>
|
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</div>
|
93
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+
</div>
|
94
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+
|
95
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+
</div>
|
96
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+
|
97
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+
|
98
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+
<!-- if includes -->
|
99
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+
|
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<div id="section">
|
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+
|
102
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+
|
103
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+
|
104
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+
|
105
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+
|
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<div id="attribute-list">
|
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<h3 class="section-bar">Attributes</h3>
|
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+
|
109
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<div class="name-list">
|
110
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<table>
|
111
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+
<tr class="top-aligned-row context-row">
|
112
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<td class="context-item-name">anonymizations</td>
|
113
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<td class="context-item-value"> [RW] </td>
|
114
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<td class="context-item-desc">
|
115
|
+
a hash, the keys are the original filepaths, the values are the
|
116
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+
corresponding anonymized names
|
117
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+
|
118
|
+
</td>
|
119
|
+
</tr>
|
120
|
+
<tr class="top-aligned-row context-row">
|
121
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+
<td class="context-item-name">destination_dir</td>
|
122
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<td class="context-item-value"> [RW] </td>
|
123
|
+
<td class="context-item-desc">
|
124
|
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a string, the directory to which all of the anoymizations and the key
|
125
|
+
should be copied
|
126
|
+
|
127
|
+
</td>
|
128
|
+
</tr>
|
129
|
+
<tr class="top-aligned-row context-row">
|
130
|
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<td class="context-item-name">filepaths</td>
|
131
|
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<td class="context-item-value"> [RW] </td>
|
132
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+
<td class="context-item-desc">
|
133
|
+
an array of strings, the paths to the items to be anonymized
|
134
|
+
|
135
|
+
</td>
|
136
|
+
</tr>
|
137
|
+
</table>
|
138
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+
</div>
|
139
|
+
</div>
|
140
|
+
|
141
|
+
|
142
|
+
|
143
|
+
<!-- if method_list -->
|
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|
+
<div id="methods">
|
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+
<h3 class="section-bar">Public Class methods</h3>
|
146
|
+
|
147
|
+
<div id="method-M000003" class="method-detail">
|
148
|
+
<a name="M000003"></a>
|
149
|
+
|
150
|
+
<div class="method-heading">
|
151
|
+
<a href="Anonymizer.src/M000003.html" target="Code" class="method-signature"
|
152
|
+
onclick="popupCode('Anonymizer.src/M000003.html');return false;">
|
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|
+
<span class="method-name">new</span><span class="method-args">(filepaths)</span>
|
154
|
+
</a>
|
155
|
+
</div>
|
156
|
+
|
157
|
+
<div class="method-description">
|
158
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+
<p>
|
159
|
+
Creates a <a href="Anonymizer.html#M000003">new</a> instance with an array
|
160
|
+
of filepaths (strings) A <a href="Anonymizer.html#M000003">new</a> set of
|
161
|
+
anaonymizations will be created automatically at initialization. If you
|
162
|
+
want to reshuffle the anonymizations you can call <a
|
163
|
+
href="Anonymizer.html#M000004">anonymize</a> at any time afterward.
|
164
|
+
</p>
|
165
|
+
</div>
|
166
|
+
</div>
|
167
|
+
|
168
|
+
<h3 class="section-bar">Public Instance methods</h3>
|
169
|
+
|
170
|
+
<div id="method-M000004" class="method-detail">
|
171
|
+
<a name="M000004"></a>
|
172
|
+
|
173
|
+
<div class="method-heading">
|
174
|
+
<a href="Anonymizer.src/M000004.html" target="Code" class="method-signature"
|
175
|
+
onclick="popupCode('Anonymizer.src/M000004.html');return false;">
|
176
|
+
<span class="method-name">anonymize</span><span class="method-args">()</span>
|
177
|
+
</a>
|
178
|
+
</div>
|
179
|
+
|
180
|
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<div class="method-description">
|
181
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<p>
|
182
|
+
Reshuffles the anonymized names
|
183
|
+
</p>
|
184
|
+
</div>
|
185
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<span class="method-name">record_to</span><span class="method-args">(destination_dir, options = {})</span>
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Copies the collection of files/directories to the destination directory
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using the current anonymized names. Records the anonymizations in a
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keymap.yml file.
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<h3>Options</h3>
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:inclue_csv => true — writes the csv format keymap in addition to
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the yaml
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:keymap_name => "basename" — uses an alternate file
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<pre><span class="ruby-comment cmt"># File lib/anonymizer.rb, line 15</span>
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<span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">filepaths</span>)
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<span class="ruby-ivar">@filepaths</span> = <span class="ruby-identifier">filepaths</span>
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<span class="ruby-ivar">@anonymizations</span> = <span class="ruby-constant">Hash</span>.<span class="ruby-identifier">new</span>
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<span class="ruby-identifier">anonymize</span>
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<title>anonymize (Anonymizer)</title>
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<pre><span class="ruby-comment cmt"># File lib/anonymizer.rb, line 22</span>
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<span class="ruby-keyword kw">def</span> <span class="ruby-identifier">anonymize</span>
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<span class="ruby-identifier">keys</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>(<span class="ruby-ivar">@filepaths</span>)
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<span class="ruby-identifier">idx</span> = <span class="ruby-value">0</span>
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<span class="ruby-identifier">ndigits</span> = (<span class="ruby-constant">Math</span>.<span class="ruby-identifier">log10</span>(<span class="ruby-ivar">@filepaths</span>.<span class="ruby-identifier">length</span>)<span class="ruby-operator">+</span><span class="ruby-value">1</span>).<span class="ruby-identifier">floor</span>
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<span class="ruby-keyword kw">until</span> <span class="ruby-identifier">keys</span>.<span class="ruby-identifier">empty?</span>
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<span class="ruby-ivar">@anonymizations</span>[<span class="ruby-identifier">keys</span>.<span class="ruby-identifier">pick!</span>] = <span class="ruby-node">"%0#{ndigits}d"</span> <span class="ruby-operator">%</span> <span class="ruby-identifier">idx</span>
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<span class="ruby-identifier">idx</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>
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<title>record_to (Anonymizer)</title>
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<pre><span class="ruby-comment cmt"># File lib/anonymizer.rb, line 40</span>
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<span class="ruby-keyword kw">def</span> <span class="ruby-identifier">record_to</span>(<span class="ruby-identifier">destination_dir</span>, <span class="ruby-identifier">options</span> = {})
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<span class="ruby-identifier">raise</span>(<span class="ruby-constant">IOError</span>, <span class="ruby-value str">"Destination directory not found."</span>) <span class="ruby-keyword kw">unless</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">exists?</span>(<span class="ruby-identifier">destination_dir</span>) <span class="ruby-keyword kw">and</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">directory?</span>(<span class="ruby-identifier">destination_dir</span>)
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<span class="ruby-ivar">@anonymizations</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">orig</span>, <span class="ruby-identifier">anon</span><span class="ruby-operator">|</span>
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<span class="ruby-identifier">copy_directory_or_file</span>(<span class="ruby-identifier">orig</span>, <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-identifier">destination_dir</span>, <span class="ruby-identifier">anon</span>))
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-identifier">keymap_filename</span> = <span class="ruby-identifier">options</span>[<span class="ruby-identifier">:keymap_name</span>].<span class="ruby-identifier">nil?</span> <span class="ruby-value">? </span><span class="ruby-value str">"keymap"</span> <span class="ruby-operator">:</span> <span class="ruby-identifier">options</span>[<span class="ruby-identifier">:keymap_name</span>]
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<span class="ruby-identifier">write_yml</span>(<span class="ruby-identifier">destination_dir</span>, <span class="ruby-identifier">keymap_filename</span> <span class="ruby-operator">+</span> <span class="ruby-value str">'.yml'</span>)
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<span class="ruby-identifier">write_csv</span>(<span class="ruby-identifier">destination_dir</span>, <span class="ruby-identifier">keymap_filename</span> <span class="ruby-operator">+</span> <span class="ruby-value str">'.csv'</span>) <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">options</span>[<span class="ruby-identifier">:include_csv</span>]
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<span class="ruby-keyword kw">end</span></pre>
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