anonymizer 0.0.0
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- data/.gitignore +2 -0
- data/Manifest +13 -0
- data/README.rdoc +0 -0
- data/Rakefile +30 -0
- data/VERSION +1 -0
- data/anonymizer-0.1.0.gem +0 -0
- data/anonymizer.gemspec +62 -0
- data/bin/anonymize_data.rb +51 -0
- data/doc/classes/Anonymizer.html +227 -0
- data/doc/classes/Anonymizer.src/M000003.html +20 -0
- data/doc/classes/Anonymizer.src/M000004.html +24 -0
- data/doc/classes/Anonymizer.src/M000005.html +24 -0
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- data/doc/classes/Array.src/M000001.html +18 -0
- data/doc/classes/Array.src/M000002.html +18 -0
- data/doc/created.rid +1 -0
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- data/doc/files/lib/anonymizer_rb.html +109 -0
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- data/doc/fr_method_index.html +31 -0
- data/doc/index.html +24 -0
- data/doc/rdoc-style.css +208 -0
- data/lib/anonymizer.rb +118 -0
- metadata +78 -0
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<a href="files/bin/anonymize_data_rb.html">bin/anonymize_data.rb</a><br />
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<a href="files/lib/anonymizer_rb.html">lib/anonymizer.rb</a><br />
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<a href="classes/Anonymizer.html#M000004">anonymize (Anonymizer)</a><br />
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<a href="classes/Anonymizer.html#M000003">new (Anonymizer)</a><br />
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<a href="classes/Array.html#M000001">pick (Array)</a><br />
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<a href="classes/Array.html#M000002">pick! (Array)</a><br />
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<a href="classes/Anonymizer.html#M000005">record_to (Anonymizer)</a><br />
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data/lib/anonymizer.rb
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require 'fileutils'
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require 'yaml'
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class Anonymizer
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# an array of strings, the paths to the items to be anonymized
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attr_accessor :filepaths
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# a string, the directory to which all of the anoymizations and the key should be copied
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attr_accessor :destination_dir
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# a hash, the keys are the original filepaths, the values are the corresponding anonymized names
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attr_accessor :anonymizations
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# Creates a new instance with an array of filepaths (strings)
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# A new set of anaonymizations will be created automatically at initialization. If you want to reshuffle the
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# anonymizations you can call anonymize at any time afterward.
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def initialize(filepaths)
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@filepaths = filepaths
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@anonymizations = Hash.new
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anonymize
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end
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# Reshuffles the anonymized names
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def anonymize
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keys = Array.new(@filepaths)
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|
+
idx = 0
|
|
28
|
+
ndigits = (Math.log10(@filepaths.length)+1).floor
|
|
29
|
+
until keys.empty?
|
|
30
|
+
@anonymizations[keys.pick!] = "%0#{ndigits}d" % idx
|
|
31
|
+
idx += 1
|
|
32
|
+
end
|
|
33
|
+
end
|
|
34
|
+
|
|
35
|
+
|
|
36
|
+
# Copies the collection of files/directories to the destination directory using the current anonymized names. Records
|
|
37
|
+
# the anonymizations in a keymap.yml file.
|
|
38
|
+
#
|
|
39
|
+
# === Options
|
|
40
|
+
# :inclue_csv => true -- writes the csv format keymap in addition to the yaml
|
|
41
|
+
#
|
|
42
|
+
# :keymap_name => "basename" -- uses an alternate file basename for the keymap files (the default is "keymap")
|
|
43
|
+
#
|
|
44
|
+
def record_to(destination_dir, options = {})
|
|
45
|
+
raise(IOError, "Destination directory not found.") unless File.exists?(destination_dir) and File.directory?(destination_dir)
|
|
46
|
+
@anonymizations.each do |orig, anon|
|
|
47
|
+
copy_directory_or_file(orig, File.join(destination_dir, anon))
|
|
48
|
+
end
|
|
49
|
+
keymap_filename = options[:keymap_name].nil? ? "keymap" : options[:keymap_name]
|
|
50
|
+
write_yml(destination_dir, keymap_filename + '.yml')
|
|
51
|
+
write_csv(destination_dir, keymap_filename + '.csv') if options[:include_csv]
|
|
52
|
+
end
|
|
53
|
+
|
|
54
|
+
|
|
55
|
+
private
|
|
56
|
+
|
|
57
|
+
|
|
58
|
+
# recursively copies directories, simply copies files preserving file extension.
|
|
59
|
+
def copy_directory_or_file(orig, dest)
|
|
60
|
+
raise(IOError, "Original file or directory not found: #{orig}") unless File.exists?(orig)
|
|
61
|
+
if File.directory?(orig) # recursively copy directories
|
|
62
|
+
FileUtils.cp_r(orig, dest)
|
|
63
|
+
else # simple copy of files, but preserve file extensions
|
|
64
|
+
ext = File.extname(orig)
|
|
65
|
+
FileUtils.cp(orig, dest + ext)
|
|
66
|
+
end
|
|
67
|
+
end
|
|
68
|
+
|
|
69
|
+
|
|
70
|
+
# creates yaml text based on current anonymization
|
|
71
|
+
def to_yaml
|
|
72
|
+
@anonymizations.to_yaml
|
|
73
|
+
end
|
|
74
|
+
|
|
75
|
+
|
|
76
|
+
# creates csv text based on current anonymization
|
|
77
|
+
def to_csv
|
|
78
|
+
csv_contents = ""
|
|
79
|
+
@anonymizations.each do |orig, anon|
|
|
80
|
+
csv_contents += "#{orig}, #{anon}\n"
|
|
81
|
+
end
|
|
82
|
+
return csv_contents
|
|
83
|
+
end
|
|
84
|
+
|
|
85
|
+
|
|
86
|
+
# writes the current anonymization yaml to a file
|
|
87
|
+
def write_yml(destination_dir,keymap_filename)
|
|
88
|
+
File.open(File.join(destination_dir,keymap_filename), 'w') do |out|
|
|
89
|
+
YAML.dump(@anonymizations, out)
|
|
90
|
+
end
|
|
91
|
+
end
|
|
92
|
+
|
|
93
|
+
|
|
94
|
+
# writes the current anonymization csv to a file
|
|
95
|
+
def write_csv(destination_dir,keymap_filename)
|
|
96
|
+
File.open(File.join(destination_dir,keymap_filename), 'w') do |out|
|
|
97
|
+
out.write(to_csv)
|
|
98
|
+
end
|
|
99
|
+
end
|
|
100
|
+
|
|
101
|
+
end
|
|
102
|
+
|
|
103
|
+
|
|
104
|
+
|
|
105
|
+
# Augments the ruby array class with a couple convenient random picking methods
|
|
106
|
+
class Array
|
|
107
|
+
|
|
108
|
+
# Picks one value from the array at random, array remains unchanged.
|
|
109
|
+
def pick
|
|
110
|
+
at(rand(length))
|
|
111
|
+
end
|
|
112
|
+
|
|
113
|
+
# Removes and returns one element of the array at random, the original array is changed by this method.
|
|
114
|
+
def pick!
|
|
115
|
+
delete_at(rand(length))
|
|
116
|
+
end
|
|
117
|
+
|
|
118
|
+
end
|
metadata
ADDED
|
@@ -0,0 +1,78 @@
|
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
|
2
|
+
name: anonymizer
|
|
3
|
+
version: !ruby/object:Gem::Version
|
|
4
|
+
version: 0.0.0
|
|
5
|
+
platform: ruby
|
|
6
|
+
authors:
|
|
7
|
+
- Kristopher J. Kosmatka
|
|
8
|
+
autorequire:
|
|
9
|
+
bindir: bin
|
|
10
|
+
cert_chain: []
|
|
11
|
+
|
|
12
|
+
date: 2009-12-10 00:00:00 -06:00
|
|
13
|
+
default_executable: anonymize_data.rb
|
|
14
|
+
dependencies: []
|
|
15
|
+
|
|
16
|
+
description: Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like.
|
|
17
|
+
email: kk4@medicine.wisc.edu
|
|
18
|
+
executables:
|
|
19
|
+
- anonymize_data.rb
|
|
20
|
+
extensions: []
|
|
21
|
+
|
|
22
|
+
extra_rdoc_files:
|
|
23
|
+
- README.rdoc
|
|
24
|
+
files:
|
|
25
|
+
- .gitignore
|
|
26
|
+
- Manifest
|
|
27
|
+
- README.rdoc
|
|
28
|
+
- Rakefile
|
|
29
|
+
- VERSION
|
|
30
|
+
- anonymizer-0.1.0.gem
|
|
31
|
+
- anonymizer.gemspec
|
|
32
|
+
- bin/anonymize_data.rb
|
|
33
|
+
- doc/classes/Anonymizer.html
|
|
34
|
+
- doc/classes/Anonymizer.src/M000003.html
|
|
35
|
+
- doc/classes/Anonymizer.src/M000004.html
|
|
36
|
+
- doc/classes/Anonymizer.src/M000005.html
|
|
37
|
+
- doc/classes/Array.html
|
|
38
|
+
- doc/classes/Array.src/M000001.html
|
|
39
|
+
- doc/classes/Array.src/M000002.html
|
|
40
|
+
- doc/created.rid
|
|
41
|
+
- doc/files/bin/anonymize_data_rb.html
|
|
42
|
+
- doc/files/lib/anonymizer_rb.html
|
|
43
|
+
- doc/fr_class_index.html
|
|
44
|
+
- doc/fr_file_index.html
|
|
45
|
+
- doc/fr_method_index.html
|
|
46
|
+
- doc/index.html
|
|
47
|
+
- doc/rdoc-style.css
|
|
48
|
+
- lib/anonymizer.rb
|
|
49
|
+
has_rdoc: true
|
|
50
|
+
homepage: http://github.com/brainmap/anonymizer
|
|
51
|
+
licenses: []
|
|
52
|
+
|
|
53
|
+
post_install_message:
|
|
54
|
+
rdoc_options:
|
|
55
|
+
- --charset=UTF-8
|
|
56
|
+
require_paths:
|
|
57
|
+
- lib
|
|
58
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
|
59
|
+
requirements:
|
|
60
|
+
- - ">="
|
|
61
|
+
- !ruby/object:Gem::Version
|
|
62
|
+
version: "0"
|
|
63
|
+
version:
|
|
64
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
|
65
|
+
requirements:
|
|
66
|
+
- - ">="
|
|
67
|
+
- !ruby/object:Gem::Version
|
|
68
|
+
version: "0"
|
|
69
|
+
version:
|
|
70
|
+
requirements: []
|
|
71
|
+
|
|
72
|
+
rubyforge_project:
|
|
73
|
+
rubygems_version: 1.3.5
|
|
74
|
+
signing_key:
|
|
75
|
+
specification_version: 3
|
|
76
|
+
summary: Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like.
|
|
77
|
+
test_files: []
|
|
78
|
+
|