anonymizer 0.0.0

data/.gitignore

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+.DS_Store
+test/*

data/Manifest

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+anonymizer.gemspec
+bin/anonymize_data.rb
+lib/anonymizer.rb
+Manifest
+Rakefile
+README.rdoc
+test/out_2/0/ddd.txt
+test/out_2/1.txt
+test/out_2/2/bbb.txt
+test/out_2/3/ccc.txt
+test/out_2/4/eee.txt
+test/out_2/5/aaa.txt
+test/out_2/keymap.csv

data/Rakefile

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+require 'rubygems'
+require 'rake'
+
+begin
+  require 'jeweler'
+  Jeweler::Tasks.new do |gemspec|
+    gemspec.name = "anonymizer"
+    gemspec.summary = "Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like."
+    gemspec.description = "Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like."
+    gemspec.email = "kk4@medicine.wisc.edu"
+    gemspec.homepage = "http://github.com/brainmap/anonymizer"
+    gemspec.authors = ["Kristopher J. Kosmatka"]
+  end
+  Jeweler::GemcutterTasks.new
+rescue LoadError
+  puts "Jeweler not available. Install it with: sudo gem install jeweler"
+end
+
+
+
+
+
+#Echoe.new('anonymizer', '0.1.0') do |p|
+#  p.description    = "Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like."
+#  p.url            = "http://github.com/kjkosmatka/anonymizer"
+#  p.author         = "Kristopher J. Kosmatka"
+#  p.email          = "kk4@medicine.wisc.edu"
+#  p.ignore_pattern = ["test/out*"]
+#  p.development_dependencies = []
+#end

data/VERSION

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+0.0.0

data/anonymizer.gemspec

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+# Generated by jeweler
+# DO NOT EDIT THIS FILE DIRECTLY
+# Instead, edit Jeweler::Tasks in Rakefile, and run the gemspec command
+# -*- encoding: utf-8 -*-
+
+Gem::Specification.new do |s|
+  s.name = %q{anonymizer}
+  s.version = "0.0.0"
+
+  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.authors = ["Kristopher J. Kosmatka"]
+  s.date = %q{2009-12-10}
+  s.default_executable = %q{anonymize_data.rb}
+  s.description = %q{Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like.}
+  s.email = %q{kk4@medicine.wisc.edu}
+  s.executables = ["anonymize_data.rb"]
+  s.extra_rdoc_files = [
+    "README.rdoc"
+  ]
+  s.files = [
+    ".gitignore",
+     "Manifest",
+     "README.rdoc",
+     "Rakefile",
+     "VERSION",
+     "anonymizer-0.1.0.gem",
+     "anonymizer.gemspec",
+     "bin/anonymize_data.rb",
+     "doc/classes/Anonymizer.html",
+     "doc/classes/Anonymizer.src/M000003.html",
+     "doc/classes/Anonymizer.src/M000004.html",
+     "doc/classes/Anonymizer.src/M000005.html",
+     "doc/classes/Array.html",
+     "doc/classes/Array.src/M000001.html",
+     "doc/classes/Array.src/M000002.html",
+     "doc/created.rid",
+     "doc/files/bin/anonymize_data_rb.html",
+     "doc/files/lib/anonymizer_rb.html",
+     "doc/fr_class_index.html",
+     "doc/fr_file_index.html",
+     "doc/fr_method_index.html",
+     "doc/index.html",
+     "doc/rdoc-style.css",
+     "lib/anonymizer.rb"
+  ]
+  s.homepage = %q{http://github.com/brainmap/anonymizer}
+  s.rdoc_options = ["--charset=UTF-8"]
+  s.require_paths = ["lib"]
+  s.rubygems_version = %q{1.3.5}
+  s.summary = %q{Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like.}
+
+  if s.respond_to? :specification_version then
+    current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
+    s.specification_version = 3
+
+    if Gem::Version.new(Gem::RubyGemsVersion) >= Gem::Version.new('1.2.0') then
+    else
+    end
+  else
+  end
+end
+

data/bin/anonymize_data.rb

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+#!/usr/bin/env ruby
+$:.unshift File.join(File.dirname(__FILE__),'..','lib')
+
+require 'optparse'
+require 'anonymizer'
+
+options = Hash.new
+options[:collection] = Array.new
+options[:options_for_record_to] = Hash.new
+
+OptionParser.new do |opts|
+  opts.banner = "Usage: anonymize_data.rb [options]"
+
+  opts.on("-d", "--destination <directory>", "Destination directory in which anonymized data should be save") do |d|
+    options[:destination] = d
+  end
+  opts.on("-c", '--collection "<list>"', "A collection of files and/or directories to anonymize, seperate with spaces. Quotes are necessary.") do |c|
+    options[:collection] += c.split
+  end
+  opts.on("-g", '--glob "<pattern>"', "Use a shell globbing pattern to select your collection. Quotes are neccessary.") do |g|
+    options[:collection] += Dir.glob(g)
+  end
+  opts.on("--include-csv","Write a csv formatted keymap file in addition to the yaml file.") do |i|
+    options[:options_for_record_to][:include_csv] = true
+  end
+  opts.on("-k","--keymap-name <basename>","Use an alternative file basename (i.e. without extension) for the keymap file.") do |k|
+    options[:options_for_record_to][:keymap_name] = k
+  end
+end.parse!
+
+
+
+raise(IndexError, "No items specified to anonymize. Check your glob pattern or explicitly list your  items using -c.") if options[:collection].empty?
+
+puts "Anonymizing:"
+options[:collection].each do |i|
+  puts "\t#{i}"
+end
+puts "To:"
+puts "\t#{options[:destination]}"
+
+begin
+  a = Anonymizer.new(options[:collection])
+  a.record_to(options[:destination], options[:options_for_record_to])
+rescue
+  puts "There was an unknown problem with anonymization.  Sorry."
+  exit 1
+end
+
+puts "+++ Successfully Anonymized. +++\n"
+exit 0

data/doc/classes/Anonymizer.html

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+<?xml version="1.0" encoding="iso-8859-1"?>
+<!DOCTYPE html 
+     PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+     "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+<head>
+  <title>Class: Anonymizer</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+  <meta http-equiv="Content-Script-Type" content="text/javascript" />
+  <link rel="stylesheet" href=".././rdoc-style.css" type="text/css" media="screen" />
+  <script type="text/javascript">
+  // <![CDATA[
+
+  function popupCode( url ) {
+    window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
+  }
+
+  function toggleCode( id ) {
+    if ( document.getElementById )
+      elem = document.getElementById( id );
+    else if ( document.all )
+      elem = eval( "document.all." + id );
+    else
+      return false;
+
+    elemStyle = elem.style;
+    
+    if ( elemStyle.display != "block" ) {
+      elemStyle.display = "block"
+    } else {
+      elemStyle.display = "none"
+    }
+
+    return true;
+  }
+  
+  // Make codeblocks hidden by default
+  document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
+  
+  // ]]>
+  </script>
+
+</head>
+<body>
+
+
+
+    <div id="classHeader">
+        <table class="header-table">
+        <tr class="top-aligned-row">
+          <td><strong>Class</strong></td>
+          <td class="class-name-in-header">Anonymizer</td>
+        </tr>
+        <tr class="top-aligned-row">
+            <td><strong>In:</strong></td>
+            <td>
+                <a href="../files/lib/anonymizer_rb.html">
+                lib/anonymizer.rb
+                </a>
+        <br />
+            </td>
+        </tr>
+
+        <tr class="top-aligned-row">
+            <td><strong>Parent:</strong></td>
+            <td>
+                Object
+            </td>
+        </tr>
+        </table>
+    </div>
+  <!-- banner header -->
+
+  <div id="bodyContent">
+
+
+
+  <div id="contextContent">
+
+
+
+   </div>
+
+    <div id="method-list">
+      <h3 class="section-bar">Methods</h3>
+
+      <div class="name-list">
+      <a href="#M000004">anonymize</a>&nbsp;&nbsp;
+      <a href="#M000003">new</a>&nbsp;&nbsp;
+      <a href="#M000005">record_to</a>&nbsp;&nbsp;
+      </div>
+    </div>
+
+  </div>
+
+
+    <!-- if includes -->
+
+    <div id="section">
+
+
+
+
+
+    <div id="attribute-list">
+      <h3 class="section-bar">Attributes</h3>
+
+      <div class="name-list">
+        <table>
+        <tr class="top-aligned-row context-row">
+          <td class="context-item-name">anonymizations</td>
+          <td class="context-item-value">&nbsp;[RW]&nbsp;</td>
+          <td class="context-item-desc">
+a hash, the keys are the original filepaths, the values are the
+corresponding anonymized names
+
+</td>
+        </tr>
+        <tr class="top-aligned-row context-row">
+          <td class="context-item-name">destination_dir</td>
+          <td class="context-item-value">&nbsp;[RW]&nbsp;</td>
+          <td class="context-item-desc">
+a string, the directory to which all of the anoymizations and the key
+should be copied
+
+</td>
+        </tr>
+        <tr class="top-aligned-row context-row">
+          <td class="context-item-name">filepaths</td>
+          <td class="context-item-value">&nbsp;[RW]&nbsp;</td>
+          <td class="context-item-desc">
+an array of strings, the paths to the items to be anonymized
+
+</td>
+        </tr>
+        </table>
+      </div>
+    </div>
+      
+
+
+    <!-- if method_list -->
+    <div id="methods">
+      <h3 class="section-bar">Public Class methods</h3>
+
+      <div id="method-M000003" class="method-detail">
+        <a name="M000003"></a>
+
+        <div class="method-heading">
+          <a href="Anonymizer.src/M000003.html" target="Code" class="method-signature"
+            onclick="popupCode('Anonymizer.src/M000003.html');return false;">
+          <span class="method-name">new</span><span class="method-args">(filepaths)</span>
+          </a>
+        </div>
+      
+        <div class="method-description">
+          <p>
+Creates a <a href="Anonymizer.html#M000003">new</a> instance with an array
+of filepaths (strings) A <a href="Anonymizer.html#M000003">new</a> set of
+anaonymizations will be created automatically at initialization. If you
+want to reshuffle the anonymizations you can call <a
+href="Anonymizer.html#M000004">anonymize</a> at any time afterward.
+</p>
+        </div>
+      </div>
+
+      <h3 class="section-bar">Public Instance methods</h3>
+
+      <div id="method-M000004" class="method-detail">
+        <a name="M000004"></a>
+
+        <div class="method-heading">
+          <a href="Anonymizer.src/M000004.html" target="Code" class="method-signature"
+            onclick="popupCode('Anonymizer.src/M000004.html');return false;">
+          <span class="method-name">anonymize</span><span class="method-args">()</span>
+          </a>
+        </div>
+      
+        <div class="method-description">
+          <p>
+Reshuffles the anonymized names
+</p>
+        </div>
+      </div>
+
+      <div id="method-M000005" class="method-detail">
+        <a name="M000005"></a>
+
+        <div class="method-heading">
+          <a href="Anonymizer.src/M000005.html" target="Code" class="method-signature"
+            onclick="popupCode('Anonymizer.src/M000005.html');return false;">
+          <span class="method-name">record_to</span><span class="method-args">(destination_dir, options = {})</span>
+          </a>
+        </div>
+      
+        <div class="method-description">
+          <p>
+Copies the collection of files/directories to the destination directory
+using the current anonymized names. Records the anonymizations in a
+keymap.yml file.
+</p>
+<h3>Options</h3>
+<p>
+:inclue_csv =&gt; true &#8212; writes the csv format keymap in addition to
+the yaml
+</p>
+<p>
+:keymap_name =&gt; &quot;basename&quot; &#8212; uses an alternate file
+basename for the keymap files (the default is &quot;keymap&quot;)
+</p>
+        </div>
+      </div>
+
+
+    </div>
+
+
+  </div>
+
+
+<div id="validator-badges">
+  <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
+</div>
+
+</body>
+</html>

data/doc/classes/Anonymizer.src/M000003.html

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+<?xml version="1.0" encoding="iso-8859-1"?>
+<!DOCTYPE html 
+     PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+     "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+<html>
+<head>
+  <title>new (Anonymizer)</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+  <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
+</head>
+<body class="standalone-code">
+  <pre><span class="ruby-comment cmt"># File lib/anonymizer.rb, line 15</span>
+  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">filepaths</span>)
+    <span class="ruby-ivar">@filepaths</span> = <span class="ruby-identifier">filepaths</span>
+    <span class="ruby-ivar">@anonymizations</span> = <span class="ruby-constant">Hash</span>.<span class="ruby-identifier">new</span>
+    <span class="ruby-identifier">anonymize</span>
+  <span class="ruby-keyword kw">end</span></pre>
+</body>
+</html>

data/doc/classes/Anonymizer.src/M000004.html

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+<?xml version="1.0" encoding="iso-8859-1"?>
+<!DOCTYPE html 
+     PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+     "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+<html>
+<head>
+  <title>anonymize (Anonymizer)</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+  <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
+</head>
+<body class="standalone-code">
+  <pre><span class="ruby-comment cmt"># File lib/anonymizer.rb, line 22</span>
+  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">anonymize</span>
+    <span class="ruby-identifier">keys</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>(<span class="ruby-ivar">@filepaths</span>)
+    <span class="ruby-identifier">idx</span> = <span class="ruby-value">0</span>
+    <span class="ruby-identifier">ndigits</span> = (<span class="ruby-constant">Math</span>.<span class="ruby-identifier">log10</span>(<span class="ruby-ivar">@filepaths</span>.<span class="ruby-identifier">length</span>)<span class="ruby-operator">+</span><span class="ruby-value">1</span>).<span class="ruby-identifier">floor</span>
+    <span class="ruby-keyword kw">until</span> <span class="ruby-identifier">keys</span>.<span class="ruby-identifier">empty?</span>
+      <span class="ruby-ivar">@anonymizations</span>[<span class="ruby-identifier">keys</span>.<span class="ruby-identifier">pick!</span>] = <span class="ruby-node">&quot;%0#{ndigits}d&quot;</span> <span class="ruby-operator">%</span> <span class="ruby-identifier">idx</span>
+      <span class="ruby-identifier">idx</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>
+    <span class="ruby-keyword kw">end</span>
+  <span class="ruby-keyword kw">end</span></pre>
+</body>
+</html>

data/doc/classes/Anonymizer.src/M000005.html

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+<?xml version="1.0" encoding="iso-8859-1"?>
+<!DOCTYPE html 
+     PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+     "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+<html>
+<head>
+  <title>record_to (Anonymizer)</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+  <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
+</head>
+<body class="standalone-code">
+  <pre><span class="ruby-comment cmt"># File lib/anonymizer.rb, line 40</span>
+  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">record_to</span>(<span class="ruby-identifier">destination_dir</span>, <span class="ruby-identifier">options</span> = {})
+    <span class="ruby-identifier">raise</span>(<span class="ruby-constant">IOError</span>, <span class="ruby-value str">&quot;Destination directory not found.&quot;</span>) <span class="ruby-keyword kw">unless</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">exists?</span>(<span class="ruby-identifier">destination_dir</span>) <span class="ruby-keyword kw">and</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">directory?</span>(<span class="ruby-identifier">destination_dir</span>)
+    <span class="ruby-ivar">@anonymizations</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">orig</span>, <span class="ruby-identifier">anon</span><span class="ruby-operator">|</span>
+      <span class="ruby-identifier">copy_directory_or_file</span>(<span class="ruby-identifier">orig</span>, <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-identifier">destination_dir</span>, <span class="ruby-identifier">anon</span>))
+    <span class="ruby-keyword kw">end</span>
+    <span class="ruby-identifier">keymap_filename</span> = <span class="ruby-identifier">options</span>[<span class="ruby-identifier">:keymap_name</span>].<span class="ruby-identifier">nil?</span> <span class="ruby-value">? </span><span class="ruby-value str">&quot;keymap&quot;</span> <span class="ruby-operator">:</span> <span class="ruby-identifier">options</span>[<span class="ruby-identifier">:keymap_name</span>]
+    <span class="ruby-identifier">write_yml</span>(<span class="ruby-identifier">destination_dir</span>, <span class="ruby-identifier">keymap_filename</span> <span class="ruby-operator">+</span> <span class="ruby-value str">'.yml'</span>)
+    <span class="ruby-identifier">write_csv</span>(<span class="ruby-identifier">destination_dir</span>, <span class="ruby-identifier">keymap_filename</span> <span class="ruby-operator">+</span> <span class="ruby-value str">'.csv'</span>) <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">options</span>[<span class="ruby-identifier">:include_csv</span>]
+  <span class="ruby-keyword kw">end</span></pre>
+</body>
+</html>