amiba 0.0.8 → 0.0.9

data/lib/amiba/frontend/public/javascript/MathJax/docs/rst/community.rst

@@ -0,0 +1,60 @@
+*********************
+The MathJax Community
+*********************
+
+If you are an active MathJax user, you may wish to become involved in
+the wider community of MathJax users.  The MathJax project maintains
+forums where users can ask questions about how to use MathJax, make
+suggestions about future features for MathJax, and present their own
+solutions to problems that they have faced.  There is also a
+bug-traking system where you can report errors that you have found
+with MathJax in your environment.
+
+
+.. _community-forums:
+
+Forums
+======
+
+If you want to discuss MathJax development, or if you need help, or if
+you have solutions you want to share, our `forums at SourceForge
+<http://sourceforge.net/projects/mathjax/forums>`_ give you that
+opportunity.  We try hard to answer questions quickly, and users can
+help with that as well.  Also, users can post code snippets showing
+how they have used MathJax, so it may be a good place to find the
+examples you are looking for.
+
+The community is only as good as the users who participate, so if
+you have something to offer, please take time to make a post on one of
+our forums.
+
+
+.. _community-tracker:
+
+Issue tracking
+==============
+
+Have you found a bug or want to suggest an improvement?  Post it to
+our `bug tracker
+<http://sourceforge.net/tracker/?group_id=261188&atid=1240827>`_.  We
+monitor the bug tracker closely, and work hard to respond to problems
+quickly.
+
+Before you create a new ticket, however, please `search the forums
+<http://sourceforge.net/search/?group_id=261188&type_of_search=forums>`_
+and `existing tickets
+<http://sourceforge.net/search/?group_id=261188&type_of_search=artifact>`_
+first to see if it has already been reported. 
+You could also be using an outdated version of MathJax, so be sure to
+:ref:`upgrade your copy <getting-mathjax-svn>` to verify that the
+problem persists in the lastest version.
+
+
+.. _badge:
+
+"Powered by MathJax"
+====================
+
+If you are using MathJax and want to show your support, please
+consider using our `"Powered by MathJax" badge
+<http://www.mathjax.org/community/mathjax-badge>`_.

data/lib/amiba/frontend/public/javascript/MathJax/docs/rst/conf.py

@@ -0,0 +1,198 @@
+# -*- coding: utf-8 -*-
+#
+# MathJax documentation build configuration file, created by
+# sphinx-quickstart on Sun May 16 23:18:19 2010.
+#
+# This file is execfile()d with the current directory set to its containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+import sys, os
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+sys.path.append(os.path.abspath('.'))
+
+# -- General configuration -----------------------------------------------------
+
+# Add any Sphinx extension module names here, as strings. They can be extensions
+# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = ['sphinx.ext.pngmath']
+#extensions = ['sphinx.ext.jsmath']
+#jsmath_path = 'mathjax/MathJax.js'
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix of source filenames.
+source_suffix = '.rst'
+
+# The encoding of source files.
+#source_encoding = 'utf-8'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'MathJax'
+copyright = u'2010 Design Science'
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+version = '1.0'
+# The full version, including alpha/beta/rc tags.
+release = '1.0'
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#language = None
+
+# There are two options for replacing |today|: either, you set today to some
+# non-false value, then it is used:
+#today = ''
+# Else, today_fmt is used as the format for a strftime call.
+#today_fmt = '%B %d, %Y'
+
+# List of documents that shouldn't be included in the build.
+#unused_docs = []
+
+# List of directories, relative to source directory, that shouldn't be searched
+# for source files.
+exclude_trees = ['_build']
+
+# The reST default role (used for this markup: `text`) to use for all documents.
+#default_role = None
+
+# If true, '()' will be appended to :func: etc. cross-reference text.
+#add_function_parentheses = True
+
+# If true, the current module name will be prepended to all description
+# unit titles (such as .. function::).
+#add_module_names = True
+
+# If true, sectionauthor and moduleauthor directives will be shown in the
+# output. They are ignored by default.
+#show_authors = False
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+#highlight_language = 'javascript'
+
+# A list of ignored prefixes for module index sorting.
+#modindex_common_prefix = []
+
+
+# -- Options for HTML output ---------------------------------------------------
+
+# The theme to use for HTML and HTML Help pages.  Major themes that come with
+# Sphinx are currently 'default' and 'sphinxdoc'.
+html_theme = 'mjtheme'
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further.  For a list of options available for each theme, see the
+# documentation.
+#html_theme_options = {}
+
+# Add any paths that contain custom themes here, relative to this directory.
+html_theme_path = ['.']
+
+# The name for this set of Sphinx documents.  If None, it defaults to
+# "<project> v<release> documentation".
+#html_title = None
+
+# A shorter title for the navigation bar.  Default is the same as html_title.
+#html_short_title = None
+
+# The name of an image file (relative to this directory) to place at the top
+# of the sidebar.
+#html_logo = None
+
+# The name of an image file (within the static path) to use as favicon of the
+# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
+# pixels large.
+#html_favicon = None
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']
+
+# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
+# using the given strftime format.
+#html_last_updated_fmt = '%b %d, %Y'
+
+# If true, SmartyPants will be used to convert quotes and dashes to
+# typographically correct entities.
+#html_use_smartypants = True
+
+# Custom sidebar templates, maps document names to template names.
+#html_sidebars = {}
+
+# Additional templates that should be rendered to pages, maps page names to
+# template names.
+#html_additional_pages = {}
+
+# If false, no module index is generated.
+#html_use_modindex = True
+
+# If false, no index is generated.
+#html_use_index = True
+
+# If true, the index is split into individual pages for each letter.
+#html_split_index = False
+
+# If true, links to the reST sources are added to the pages.
+#html_show_sourcelink = True
+
+# If true, an OpenSearch description file will be output, and all pages will
+# contain a <link> tag referring to it.  The value of this option must be the
+# base URL from which the finished HTML is served.
+#html_use_opensearch = ''
+
+# If nonempty, this is the file name suffix for HTML files (e.g. ".xhtml").
+#html_file_suffix = ''
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'MathJaxdoc'
+
+
+# -- Options for LaTeX output --------------------------------------------------
+
+# The paper size ('letter' or 'a4').
+#latex_paper_size = 'letter'
+
+# The font size ('10pt', '11pt' or '12pt').
+#latex_font_size = '10pt'
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title, author, documentclass [howto/manual]).
+latex_documents = [
+  ('index', 'MathJax.tex', u'MathJax Documentation',
+   u'Davide Cervone, Casey Stark, Robert Miner, Paul Topping', 'manual'),
+]
+
+# The name of an image file (relative to this directory) to place at the top of
+# the title page.
+#latex_logo = None
+
+# For "manual" documents, if this is true, then toplevel headings are parts,
+# not chapters.
+#latex_use_parts = False
+
+# Additional stuff for the LaTeX preamble.
+#latex_preamble = ''
+
+# Documents to append as an appendix to all manuals.
+#latex_appendices = []
+
+# If false, no module index is generated.
+#latex_use_modindex = True

data/lib/amiba/frontend/public/javascript/MathJax/docs/rst/configuration.rst

@@ -0,0 +1,375 @@
+.. _loading:
+
+*******************************
+Loading and Configuring MathJax
+*******************************
+
+You load MathJax into a web page by including its main JavaScript file
+into the page.  That is done via a ``<script>`` tag that links to the
+``MathJax.js`` file.  Place the following line in the ``<head>``
+section of your document:
+
+.. code-block:: html
+
+    <script type="text/javascript" src="path-to-MathJax/MathJax.js"></script>
+
+where ``path-to-MathJax`` is replaced by the URL of the MathJax
+directory on your server, or (if you are using MathJax locally rather
+than through a server) the location of that directory on your hard
+disk.  For example, if the MathJax directory is at the top level of
+your web server's directory hierarchy, you might use
+
+.. code-block:: html
+
+    <script type="text/javascript" src="/MathJax/MathJax.js"></script>
+
+to load MathJax.
+
+Although it is possible to load MathJax from a site other than your
+own web server, there are issues involved in doing so that you need to
+take into consideration.  See the :ref:`Notes About Shared Servers
+<cross-domain-linking>` for more details.  Please do **not** link to
+the copy of MathJax at ``www.mathjax.org``, as we do not have the
+resources to act as a web service for all the sites on the web that
+would like to display mathematics.  If you are able to run MathJax
+from your own server, please do so (this will probably give you better
+response time in any case).
+
+It is best to load MathJax in the document's ``<head>`` block, but it
+is also possible to load MathJax into the ``<body>`` section, if
+needed.  If you do this, load it as early as possible, as
+MathJax will begin to load its components as soon as it is included in
+the page, and that will help speed up the processing of the
+mathematics on your page.  MathJax does expect there to be a
+``<head>`` section to the document, however, so be sure there is one
+if you are loading MathJax in the ``<body>``.
+
+It is also possible to load MathJax dynamically after the page has
+been prepared, for example, via a `GreaseMonkey
+<http://www.greasespot.net/>`_ script, or using a specially prepared
+`bookmarklet <http://en.wikipedia.org/wiki/Bookmarklet>`_.  This is an
+advanced topic, however; see :ref:`Loading MathJax Dynamically
+<ajax-mathjax>` for more details.
+
+
+Configuring MathJax
+===================
+
+There are several ways to configure MathJax, but the easiest is to use
+the ``config/MathJax.js`` file that comes with MathJax.  See the
+comments in that file, or the :ref:`configuration details
+<configuration>` section, for explanations of the meanings of the various
+configuration options.  You can edit the ``config/MathJax.js`` file to
+change any of the settings that you want to customize.  When you
+include MathJax in your page via
+
+.. code-block:: html
+
+    <script type="text/javascript" src="path-to-MathJax/MathJax.js"></script>
+
+it will load ``config/MathJax.js`` automatically as one of its
+first actions.
+
+Alternatively, you can configure MathJax efficiently by calling
+:meth:`MathJax.Hub.Config()` when you include MathJax in your page, as
+follows:
+
+.. code-block:: html
+
+    <script type="text/javascript" src="path-to-MathJax/MathJax.js">
+        MathJax.Hub.Config({
+            extensions: ["tex2jax.js"],
+            jax: ["input/TeX", "output/HTML-CSS"],
+            tex2jax: {
+                inlineMath: [ ['$','$'], ["\\(","\\)"] ],
+                displayMath: [ ['$$','$$'], ["\\[","\\]"] ],
+            },
+            "HTML-CSS": { availableFonts: ["TeX"] }
+        });
+    </script>
+
+This example includes the ``tex2jax`` preprocessor and configures it
+to use both the standard TeX and LaTeX math delimiters.  It uses the
+TeX input processor and the HTML-CSS output processor, and forces the
+HTML-CSS processor to use the TeX fonts rather that other locally
+installed fonts (e.g., :term:`STIX` fonts).  See the
+:ref:`configuration options <configuration>` section (or the comments
+in the ``config/MathJax.js`` file) for more information about the
+configuration options that you can include in the
+:meth:`MathJax.Hub.Config()` call.  Note that if you configure MathJax
+using this in-line approach, the ``config/MathJax.js`` file is **not**
+loaded.
+
+Finally, if you would like to use several different configuration
+files (like ``config/MathJax.js``, but with different settings in each
+one), you can copy ``config/MathJax.js`` to ``config/MathJax-2.js``,
+or some other convenient name, and use
+
+.. code-block:: html
+
+    <script type="text/javascript" src="path-to-MathJax/MathJax.js">
+        MathJax.Hub.Config({ config: "MathJax-2.js" });
+    </script>
+
+to load the alternative configuration file ``config/MathJax-2.js``
+from the MathJax ``config`` directory.  In this way, you can have as
+many distinct configuration files as you need.
+
+
+.. _common-configurations:
+
+Common Configurations
+=====================
+
+The following examples show configurations that are useful for some
+common situations.  This is certainly not an exhaustive list, and
+there are variations possible for any of them.  Again, the comments in
+the ``config/MathJax.js`` file can help you decide what settings to
+include, even if you are using the in-line configuration method.
+
+The TeX setup
+-------------
+
+This example calls the ``tex2jax`` preprocessor to identify
+mathematics in the page by looking for TeX and LaTeX math delimiters.
+It uses ``$...$`` and ``\(...\)`` for in-line mathematics, while
+``$$...$$`` and ``\[...\]`` mark displayed equations.  Because dollar
+signs are used to mark mathematics, if you want to produce an actual
+dollar sign in your document, you must "escape" it using a slash:
+``\$``.  This configuration also loads the ``AMSmath`` and
+``AMSsymbols`` extensions so that the macros and environments they
+provide are defined for use on the page.
+
+.. code-block:: javascript
+    
+    MathJax.Hub.config({
+        extensions: ["tex2jax.js","TeX/AMSmath.js","TeX/AMSsymbols.js"],
+        jax: ["input/TeX","output/HTML-CSS"],
+        tex2jax: {
+            inlineMath: [['$','$'],["\\(","\\)"]],
+            processEscapes: true,
+        },
+    });
+
+Other extensions that you may consider adding to the `extensions`
+array include:  ``TeX/noErrors.js``, which shows the original TeX code
+if an error occurs while processing the mathematics (rather than an
+error message), ``TeX/noUndefined.js``, which shows undefined
+macros names in red (rather than producing an error), and
+``TeX/autobold.js``, which automatically inserts ``\boldsymbol{...}``
+around your mathematics when it appears in a section of your page that
+is in bold.  Most of the other TeX extensions are loaded automatically
+when needed, and so do not need to be included explicitly in your
+`extensions` array.
+
+See the :ref:`tex2jax configuration <configure-tex2jax>` section for
+other configuration options for the ``tex2jax`` preprocessor, and the
+:ref:`TeX input jax configuration <configure-TeX>` section for options
+that control the TeX input processor.
+
+
+The MathML setup
+----------------
+
+This example calls the ``mml2jax`` preprocessor to identify
+mathematics in the page that is in :term:`MathML` format, which uses
+``<math display="block">`` to indicate displayed equations, and
+``<math display="inline">`` or simply ``<math>`` to mark in-line
+formulas.
+
+.. code-block:: javascript
+
+    MathJax.Hub.config({
+        extensions: ["mml2jax.js"],
+        jax: ["input/MathML","output/HTML-CSS"]
+    });
+
+Note that this will work in HTML files, not just XHTML files (MathJax
+works with both), and that the web page need not be served with any
+special MIME-type.  Also note that, unless you are using XHTML rather
+than HTML, you should not include a namespace prefix for your
+``<math>`` tags; for example, you should not use ``<m:math>`` except
+in a file where you have tied the ``m`` namespace to the MathML DTD.
+
+See the :ref:`mml2jax configuration <configure-mml2jax>` section for
+other configuration options for the ``mml2jax`` preprocessor, and the
+:ref:`MathML input jax configuration <configure-MathML>` section for
+options that control the MathML input processor.
+
+
+Both TeX and MathML
+-------------------
+
+This example provides for both TeX and MathML input in the same file.
+It calls on both the ``tex2jax`` and ``mml2jax`` preprocessors and the
+TeX and MathML input jax to do the job.
+
+.. code-block:: javascript
+
+    MathJax.Hub.config({
+        extensions: ["tex2jax.js", "mml2jax.js"],
+        jax: ["input/TeX", "input/MathML", "output/HTML-CSS"],
+    });
+
+Notice that no ``tex2jax`` configuration section is included, so it
+uses its default options (no single dollar signs for in-line math).
+
+The majority of the code for the TeX and MathML input processors are
+not loaded until they are actually needed by the mathematics on the
+page, so if this configuration is used on a page that include only
+MathML, the TeX input processor will not be loaded.  Thus it is
+reasonably efficient to specify both input processors even if only one
+(or neither one) is used.
+
+
+TeX input with MathML output
+----------------------------
+
+This example configures MathJax to use the ``tex2jax`` preprocessor
+and TeX input processor, but the choice of output format is determined
+by MathJax depending on the capabilities of the users's browser.  The
+is performed by the ``MMLorHTML.js`` configuration file that is loaded
+in the `config`` array.
+
+.. code-block:: javascript
+
+    MathJax.Hub.Config({
+        config: ["MMLorHTML.js"],
+        extensions: ["tex2jax.js"],
+        jax: ["input/TeX"]
+    });
+
+With this setup, Firefox or Internet Explorer with the `MathPlayer
+plugin <http://www.dessci.com/en/products/mathplayer/>`_ installed
+will use the NativeMML output processor, while all other browsers will
+use the HTML-CSS output processor.  Since native MathML support is
+faster than MathJax's HTML-CSS processor, this will mean that the web
+pages will display faster for Firefox and IE than they woudl
+otherwise.  This speed comes at the cost, however, as you are now
+relying on the native MathML support to render the mathematics, and
+that is outside of MathJax's control.  There may be spacing or other
+display differences (compared to MathJax's HTML-CSS output) when the
+NativeMML output processor is used.
+
+See :ref:`MathJax Output Formats <output-formats>` for more
+information on the NativeMML and HTML-CSS output processors.  See the
+:ref:`MMLorHTML configuration <configure-MMLorHTML>` section for
+details on the options that control the ``MMLorHTML`` configuration.
+
+
+MathML input and output in all browsers
+---------------------------------------
+
+This example configures MathJax to look for MathML within your page,
+and to display it using the browser's native MathML support, if
+possible, or its HTML-CSS output if not.
+
+.. code-block:: javascript
+
+    MathJax.Hub.Config({
+        config: ["MMLorHTML.js"],
+        extensions: ["mml2jax.js"],
+        jax: ["input/MathML"]
+    });
+
+Using this configuration, MathJax finally makes MathML available in
+all modern browsers.
+
+See the :ref:`MMLorHTML configuration <configure-MMLorHTML>` section
+for details on the options that control the ``MMLorHTML``
+configuration file, the :ref:`MathML configuration <configure-MathML>`
+section for the options that control the MathML output processor, and
+the :ref:`mml2jax configuration <configure-mml2jax>` section for the
+options that control the ``mml2jax`` preprocessor.
+
+
+.. _configuration:
+
+Configuration Objects
+=====================
+
+The various components of MathJax, including its input and output
+processors, its preprocessors, its extensions, and the MathJax core,
+all can be configured through the ``config/MathJax.js`` file, or via a
+:meth:`MathJax.Hub.Config()` call (indeed, if you look closely, you
+will see that ``config/MathJax.js`` is itself one big call to
+:meth:`MathJax.Hub.Config()`).  Anything that is in
+``config/MathJax.js`` can be included in-line to configure MathJax.
+
+The structure that you pass to :meth:`MathJax.Hub.Config()` is a
+JavaScript object that includes name-value pairs giving the names of
+parameters and their values, with pairs separated by commas.  Be
+careful not to include a comma after the last value, however, as some
+browsers (namely Internet Explorer) will fail to process the
+configuration if you do.
+
+The MathJax components, like the TeX input processor, have their own
+sections in the configuration object, labeled by the component name,
+and using an configuration object as its value.  The object is itself
+a configuration object made up of name-value pairs that give the
+configuration options for the component.
+
+For example,
+
+.. code-block:: javascript
+
+    MathJax.Hub.Config({
+      showProcessingMessages: false,
+      jax: ["input/TeX", "output/HTML-CSS"],
+      TeX: {
+        TagSide: "left",
+        Macros: {
+	  RR: '{\\bf R}',
+	  bold: ['{\\bf #1}',1]
+	}
+      }
+    });
+
+is a configration that includes two settings for the MathJax Hub (one
+for `showProcessingMessages` and one of the `jax` array), and a
+configuration object for the TeX input processor.  The latter includes
+a setting for the TeX input processor's `TagSide` option (to set tags
+on the left rather than the right) and a setting for `Macros`, which
+defines new TeX macros (in this case, two macros, one called ``\RR``
+that produces a bold "R", and one called ``\bold`` that puts is
+argument in bold face).
+
+The ``config/MathJax.js`` file is another example that shows nearly
+all the configuration options for all of MathJax's components.
+
+
+Configuration Options by Component
+==================================
+
+The individual options are explained in the following sections, which
+are categorized by the component they affect.
+
+.. toctree::
+    :maxdepth: 1
+
+    The core options <options/hub>
+
+.. toctree::
+    :maxdepth: 1
+
+    The tex2jax preprocessor options <options/tex2jax>
+    The mml2jax preprocessor options <options/mml2jax>
+    The jsMath2jax preprocessor options <options/jsMath2jax>
+
+.. toctree::
+    :maxdepth: 1
+
+    The TeX input processor options <options/TeX>
+    The MathML input processor options <options/MathML>
+    The HTML-CSS output processor options <options/HTML-CSS>
+    The NativeMML output processor options <options/NativeMML>
+    The MMLorHTML configuration options <options/MMLorHTML>
+    
+.. toctree::
+    :maxdepth: 1
+
+    The MathMenu options <options/MathMenu>
+    The MathZoom options <options/MathZoom>
+    The FontWarnings options <options/FontWarnings>
+
+