ai4r 1.2 → 1.3

data/test/clusterers/bisecting_k_means_test.rb

@@ -0,0 +1,59 @@
+$:.unshift File.join(File.dirname(__FILE__),'..','lib')
+
+require 'test/unit'
+require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/bisecting_k_means'
+
+class BisectingKMeansTest < Test::Unit::TestCase
+  
+  include Ai4r::Clusterers
+  include Ai4r::Data
+
+  @@data = [  [10, 3], [3, 10], [2, 8], [2, 5], [3, 8], [10, 3],
+              [1, 3], [8, 1], [2, 9], [2, 5], [3, 3], [9, 4]]
+  
+  def test_build_without_refine
+    build(false)
+  end
+  
+  def test_build_with_refine
+    build(true)
+  end
+  
+  protected
+  def build(refine)
+    data_set = DataSet.new(:data_items => @@data, :data_labels => ["X", "Y"])
+    clusterer = BisectingKMeans.new
+    clusterer.set_parameters :refine => refine
+    clusterer.build(data_set, 4)
+    #draw_map(clusterer)
+    # Verify that all 4 clusters are created
+    assert_equal 4, clusterer.clusters.length
+    assert_equal 4, clusterer.centroids.length
+    # The addition of all instances of every cluster must be equal than
+    # the number of data points
+    total_length = 0
+    clusterer.clusters.each do |cluster| 
+      total_length += cluster.data_items.length
+    end
+    assert_equal @@data.length, total_length
+    # Data inside clusters must be the same as orifinal data
+    clusterer.clusters.each do |cluster| 
+     cluster.data_items.each do |data_item|
+       assert @@data.include?(data_item)
+     end
+    end
+  end
+  
+  private
+  def draw_map(clusterer)
+    map = Array.new(11) {Array.new(11, 0)}
+    clusterer.clusters.each_index do |i|
+      clusterer.clusters[i].data_items.each do |point|
+        map[point.first][point.last]=(i+1)
+      end
+    end
+    map.each { |row| puts row.inspect}
+  end
+  
+end
+

data/test/clusterers/k_means_test.rb

@@ -0,0 +1,93 @@
+$:.unshift File.join(File.dirname(__FILE__),'..','lib')
+
+require 'test/unit'
+require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/k_means'
+
+class KMeansTest < Test::Unit::TestCase
+  
+  include Ai4r::Clusterers
+  include Ai4r::Data
+
+  @@data = [  [10, 3], [3, 10], [2, 8], [2, 5], [3, 8], [10, 3],
+              [1, 3], [8, 1], [2, 9], [2, 5], [3, 3], [9, 4]]
+  
+  def test_build
+    data_set = DataSet.new(:data_items => @@data, :data_labels => ["X", "Y"])
+    clusterer = KMeans.new.build(data_set, 4)
+    #draw_map(clusterer)
+    # Verify that all 4 clusters are created
+    assert_equal 4, clusterer.clusters.length
+    assert_equal 4, clusterer.centroids.length
+    # The addition of all instances of every cluster must be equal than
+    # the number of data points
+    total_length = 0
+    clusterer.clusters.each do |cluster| 
+      total_length += cluster.data_items.length
+    end
+    assert_equal @@data.length, total_length
+    # Data inside clusters must be the same as orifinal data
+    clusterer.clusters.each do |cluster| 
+     cluster.data_items.each do |data_item|
+       assert @@data.include?(data_item)
+     end
+    end
+  end
+  
+  def test_eval
+    data_set = DataSet.new(:data_items => @@data, :data_labels => ["X", "Y"])
+    clusterer = KMeans.new.build(data_set, 4)
+    item = [10,0]
+    cluster_index = clusterer.eval(item)
+    # Must return a valid cluster index [0-3]
+    assert cluster_index >= 0 && cluster_index < 4
+    # Distance to cluster centroid must be less than distance to any other
+    # centroid
+    min_distance = clusterer.distance(clusterer.centroids[cluster_index], item)
+    clusterer.centroids.each do |centroid|
+      assert clusterer.distance(centroid, item) >= min_distance
+    end
+  end
+  
+  def test_distance
+    clusterer = KMeans.new
+    # By default, distance returns the eucledian distance to the power of 2
+    assert_equal 2385, clusterer.distance(
+      [1, 10, "Chicago", 2], 
+      [10, 10, "London", 50])
+    # Test new distance definition
+    manhattan_distance = lambda do |a, b| 
+        dist = 0.0
+        a.each_index do |index|
+          if a[index].is_a?(Numeric) && b[index].is_a?(Numeric)
+            dist = dist + (a[index]-b[index]).abs
+          end
+        end
+        dist
+    end
+    clusterer.set_parameters({:distance_function => manhattan_distance})
+    assert_equal 57, clusterer.distance(
+      [1, 10, "Chicago", 2], 
+      [10, 10, "London", 50])
+  end
+
+  def test_max_iterations
+    data_set = DataSet.new(:data_items => @@data, :data_labels => ["X", "Y"])
+    clusterer = KMeans.new.
+      set_parameters({:max_iterations=>1}).
+      build(data_set, 4)
+    assert_equal 1, clusterer.iterations
+  end
+  
+  private
+  def draw_map(clusterer)
+    map = Array.new(11) {Array.new(11, 0)}
+    clusterer.clusters.each_index do |i|
+      clusterer.clusters[i].data_items.each do |point|
+        map[point.first][point.last]=(i+1)
+      end
+    end
+    map.each { |row| puts row.inspect}
+  end
+  
+end
+

data/test/data/data_set_test.rb

@@ -0,0 +1,92 @@
+# Author::    Sergio Fierens
+# License::   MPL 1.1
+# Project::   ai4r
+# Url::       http://ai4r.rubyforge.org/
+#
+# You can redistribute it and/or modify it under the terms of 
+# the Mozilla Public License version 1.1  as published by the 
+# Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
+
+require 'test/unit'
+require File.dirname(__FILE__) + '/../../lib/ai4r/data/data_set'
+
+module Ai4r
+  module Data
+    class DataSetTest < Test::Unit::TestCase
+      
+      def test_load_data_and_labels_from_csv
+        set = DataSet.new.load_data_and_labels_from_csv("#{File.dirname(__FILE__)}/data_set.csv")
+        assert_equal 120, set.data_items.length
+        assert_equal ["zone", "rooms", "size", "price"], set.data_labels
+      end
+      
+      def test_build_domains
+        domains =  [  Set.new(["New York", "Chicago"]), 
+                      Set.new(["M", "F"]), 
+                      Set.new(["Y", "N"]) ]
+        data = [  [ "New York", "M", "Y"],
+                  [ "Chicago", "M", "Y"],
+                  [ "New York", "F", "Y"],
+                  [ "New York", "M", "N"],
+                  [ "Chicago", "M", "N"],
+                  [ "Chicago", "F", "Y"] ]
+        labels = ["city", "gender", "result"]
+        set = DataSet.new({:data_items => data, :data_labels => labels})
+        assert_equal domains, set.build_domains
+        assert_equal domains[0], set.build_domain("city")
+        assert_equal domains[1], set.build_domain(1)
+        assert_equal domains[2], set.build_domain("result")
+      end
+      
+      def test_set_data_labels
+        labels = ["A", "B"]
+        set = DataSet.new.set_data_labels(labels)
+        assert_equal labels, set.data_labels
+        set = DataSet.new(:data_labels => labels)
+        assert_equal labels, set.data_labels
+        set = DataSet.new(:data_items => [[ 1, 2, 3]])
+        assert_raise(ArgumentError) { set.set_data_labels(labels) }
+      end
+
+      def test_set_data_items
+        items = [  [ "New York", "M", "Y"],
+                  [ "Chicago", "M", "Y"],
+                  [ "New York", "F", "Y"],
+                  [ "New York", "M", "N"],
+                  [ "Chicago", "M", "N"],
+                  [ "Chicago", "F", "Y"] ]
+        set = DataSet.new.set_data_items(items)
+        assert_equal items, set.data_items
+        assert_equal 3, set.data_labels.length
+        items << items.first[0..-2]
+        assert_raise(ArgumentError) { set.set_data_items(items) }
+        assert_raise(ArgumentError) { set.set_data_items(nil) }
+        assert_raise(ArgumentError) { set.set_data_items([1]) }
+      end
+      
+      def test_get_attribute_mean_or_mode
+        items = [  [ "New York", 25, "Y"],
+                  [ "New York", 55, "Y"],
+                  [ "Chicago", 23, "Y"],
+                  [ "Boston", 23, "N"],
+                  [ "Chicago", 12, "N"],
+                  [ "Chicago", 87, "Y"] ]
+        set = DataSet.new.set_data_items(items)
+        assert_equal "Chicago", set.get_attribute_mean_or_mode(0)
+        assert_equal 37.5, set.get_attribute_mean_or_mode(1)
+      end
+      
+      def test_get_mean_or_mode
+                items = [  [ "New York", 25, "Y"],
+                  [ "New York", 55, "Y"],
+                  [ "Chicago", 23, "Y"],
+                  [ "Boston", 23, "N"],
+                  [ "Chicago", 12, "N"],
+                  [ "Chicago", 87, "Y"] ]
+        set = DataSet.new.set_data_items(items)
+        assert_equal ["Chicago", 37.5, "Y"], set.get_mean_or_mode
+      end
+     
+    end
+  end
+end

metadata

@@ -1,184 +1,308 @@
 --- !ruby/object:Gem::Specification 
-rubygems_version: 0.9.4
-specification_version: 1
 name: ai4r
 version: !ruby/object:Gem::Version 
-  version: "1.2"
-date: 2009-02-14 00:00:00 +00:00
-summary: ruby implementations of algorithms covering several Artificial intelligence fields, including Genetic algorithms, Neural Networks, and machine learning.
-require_paths: 
-- lib
-email: 
-homepage: http://ai4r.rubyforge.org/
-rubyforge_project: 
-description: 
-autorequire: ai4r
-default_executable: 
-bindir: bin
-has_rdoc: true
-required_ruby_version: !ruby/object:Gem::Version::Requirement 
-  requirements: 
-  - - ">"
-    - !ruby/object:Gem::Version 
-      version: 0.0.0
-  version: 
+  version: "1.3"
 platform: ruby
-signing_key: 
-cert_chain: 
-post_install_message: 
 authors: 
 - Sergio Fierens
+autorequire: ai4r
+bindir: bin
+cert_chain: []
+
+date: 2009-03-06 00:00:00 +00:00
+default_executable: 
+dependencies: []
+
+description: 
+email: 
+executables: []
+
+extensions: []
+
+extra_rdoc_files: 
+- README.rdoc
 files: 
+- examples/neural_network
+- examples/neural_network/backpropagation_example.rb
+- examples/neural_network/patterns_with_base_noise.rb
+- examples/neural_network/xor_example.rb
+- examples/neural_network/patterns_with_noise.rb
+- examples/neural_network/training_patterns.rb
 - examples/decision_trees
 - examples/decision_trees/data_set.csv
-- examples/decision_trees/id3_example.rb
 - examples/decision_trees/results.txt
+- examples/decision_trees/id3_example.rb
 - examples/genetic_algorithm
 - examples/genetic_algorithm/genetic_algorithm_example.rb
 - examples/genetic_algorithm/travel_cost.csv
-- examples/neural_network
-- examples/neural_network/backpropagation_example.rb
-- examples/neural_network/patterns_with_base_noise.rb
-- examples/neural_network/patterns_with_noise.rb
-- examples/neural_network/training_patterns.rb
+- lib/ai4r.rb
 - lib/ai4r
+- lib/ai4r/clusterers
+- lib/ai4r/clusterers/bisecting_k_means.rb
+- lib/ai4r/clusterers/k_means.rb
+- lib/ai4r/clusterers/clusterer.rb
+- lib/ai4r/neural_network
+- lib/ai4r/neural_network/backpropagation.rb
 - lib/ai4r/classifiers
-- lib/ai4r/classifiers/classifier_helper.rb
-- lib/ai4r/classifiers/id3.rb
-- lib/ai4r/classifiers/one_r.rb
 - lib/ai4r/classifiers/prism.rb
+- lib/ai4r/classifiers/one_r.rb
 - lib/ai4r/classifiers/zero_r.rb
+- lib/ai4r/classifiers/classifier.rb
+- lib/ai4r/classifiers/id3.rb
 - lib/ai4r/genetic_algorithm
 - lib/ai4r/genetic_algorithm/genetic_algorithm.rb
-- lib/ai4r/neural_network
-- lib/ai4r/neural_network/backpropagation.rb
+- lib/ai4r/data
+- lib/ai4r/data/data_set.rb
 - site/build
-- site/build/tmp
-- site/build/tmp/build-info.xml
-- site/build/tmp/input.xmap
-- site/build/tmp/internal.xmap
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+- site/build/webapp/WEB-INF/logs/debug.log
+- site/build/site
+- site/build/site/en
+- site/build/site/en/svn.pdf
+- site/build/site/en/forum.html
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+- site/build/site/en/geneticAlgorithms.html
+- site/build/site/en/wholesite.pdf
+- site/build/site/en/neuralNetworks.pdf
+- site/build/site/en/neuralNetworks.html
+- site/build/site/en/machineLearning.html
+- site/build/site/en/index.html
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 - site/forrest.properties
 - site/forrest.properties.dispatcher.properties
-- site/forrest.properties.xml
 - site/src
 - site/src/documentation
-- site/src/documentation/classes
-- site/src/documentation/classes/CatalogManager.properties
 - site/src/documentation/conf
-- site/src/documentation/content
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-- site/src/documentation/content/xdocs/neuralNetworks.xml
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-- site/src/documentation/content/xdocs/svn.xml
-- site/src/documentation/content/xdocs/tabs.xml
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+- site/src/documentation/resources/images/ero.gif
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 - site/src/documentation/resources/images/s.png
+- site/src/documentation/resources/images/icon.png
+- site/src/documentation/resources/images/icon-b.png
+- site/src/documentation/resources/images/c_wbn.png
+- site/src/documentation/resources/images/c_wn.png
+- site/src/documentation/resources/images/neural_network_example.png
+- site/src/documentation/resources/images/europe3.png
+- site/src/documentation/resources/images/ai4r-logo.png
 - site/src/documentation/resources/images/sigmoid.png
-- site/src/documentation/resources/images/sub-dir
-- site/src/documentation/resources/images/sub-dir/icon-c.png
-- site/src/documentation/resources/images/sub-dir/Thumbs.db
-- site/src/documentation/resources/images/s_wbn.png
-- site/src/documentation/resources/images/s_wn.png
-- site/src/documentation/resources/images/t.png
-- site/src/documentation/resources/images/Thumbs.db
-- site/src/documentation/resources/images/t_wbn.png
 - site/src/documentation/resources/images/t_wn.png
-- site/src/documentation/resources/schema
-- site/src/documentation/resources/schema/catalog.xcat
-- site/src/documentation/resources/schema/hello-v10.dtd
-- site/src/documentation/resources/schema/symbols-project-v10.ent
-- site/src/documentation/resources/stylesheets
-- site/src/documentation/resources/stylesheets/hello2document.xsl
-- site/src/documentation/resources/themes
-- site/src/documentation/sitemap.xmap
+- site/src/documentation/resources/images/t.png
+- site/src/documentation/resources/images/icon-a.png
+- site/src/documentation/resources/images/europe2.png
+- site/src/documentation/resources/images/genetic_algorithms_example.png
 - site/src/documentation/skinconf.xml
+- site/src/documentation/README.txt
+- site/src/documentation/content
+- site/src/documentation/content/xdocs
+- site/src/documentation/content/xdocs/index.xml
+- site/src/documentation/content/xdocs/machineLearning.xml
+- site/src/documentation/content/xdocs/downloads.html
+- site/src/documentation/content/xdocs/site.xml
+- site/src/documentation/content/xdocs/geneticAlgorithms.xml
+- site/src/documentation/content/xdocs/neuralNetworks.xml
+- site/src/documentation/content/xdocs/svn.xml
+- site/src/documentation/content/xdocs/tabs.xml
+- site/src/documentation/content/locationmap.xml
 - site/src/documentation/translations
+- site/src/documentation/translations/menu_es.xml
+- site/src/documentation/translations/menu_af.xml
 - site/src/documentation/translations/langcode.xml
-- site/src/documentation/translations/languages_de.xml
 - site/src/documentation/translations/languages_en.xml
 - site/src/documentation/translations/languages_es.xml
-- site/src/documentation/translations/languages_fr.xml
-- site/src/documentation/translations/languages_nl.xml
-- site/src/documentation/translations/menu.xml
-- site/src/documentation/translations/menu_af.xml
 - site/src/documentation/translations/menu_de.xml
-- site/src/documentation/translations/menu_es.xml
-- site/src/documentation/translations/menu_fr.xml
-- site/src/documentation/translations/menu_it.xml
 - site/src/documentation/translations/menu_nl.xml
-- site/src/documentation/translations/menu_no.xml
-- site/src/documentation/translations/menu_ru.xml
+- site/src/documentation/translations/tabs_fr.xml
 - site/src/documentation/translations/menu_sk.xml
-- site/src/documentation/translations/tabs.xml
+- site/src/documentation/translations/menu_it.xml
+- site/src/documentation/translations/menu_ru.xml
+- site/src/documentation/translations/languages_de.xml
 - site/src/documentation/translations/tabs_de.xml
-- site/src/documentation/translations/tabs_es.xml
-- site/src/documentation/translations/tabs_fr.xml
+- site/src/documentation/translations/languages_fr.xml
+- site/src/documentation/translations/menu.xml
+- site/src/documentation/translations/menu_fr.xml
 - site/src/documentation/translations/tabs_nl.xml
+- site/src/documentation/translations/languages_nl.xml
+- site/src/documentation/translations/tabs.xml
+- site/src/documentation/translations/tabs_es.xml
+- site/src/documentation/translations/menu_no.xml
+- site/src/documentation/classes
+- site/src/documentation/classes/CatalogManager.properties
+- site/forrest.properties.xml
 - README.rdoc
-test_files: 
-- test/classifiers/id3_test.rb
-- test/classifiers/one_r_test.rb
-- test/classifiers/prism_test.rb
-- test/classifiers/zero_r_test.rb
-- test/genetic_algorithm/chromosome_test.rb
-- test/genetic_algorithm/genetic_algorithm_test.rb
-- test/neural_network/backpropagation_test.rb
+has_rdoc: true
+homepage: http://ai4r.rubyforge.org
+post_install_message: 
 rdoc_options: []
 
-extra_rdoc_files: 
-- README.rdoc
-executables: []
-
-extensions: []
-
+require_paths: 
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement 
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      version: "0"
+  version: 
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      version: "0"
+  version: 
 requirements: []
 
-dependencies: []
-
+rubyforge_project: 
+rubygems_version: 1.2.0
+signing_key: 
+specification_version: 2
+summary: ruby implementations of algorithms covering several Artificial intelligence fields, including Genetic algorithms, Neural Networks, machine learning, and clustering.
+test_files: 
+- test/clusterers/k_means_test.rb
+- test/clusterers/bisecting_k_means_test.rb
+- test/neural_network/backpropagation_test.rb
+- test/classifiers/zero_r_test.rb
+- test/classifiers/prism_test.rb
+- test/classifiers/one_r_test.rb
+- test/classifiers/id3_test.rb
+- test/genetic_algorithm/genetic_algorithm_test.rb
+- test/genetic_algorithm/chromosome_test.rb
+- test/data/data_set_test.rb