zombie-squirrel 0.8.1__py3-none-any.whl → 0.8.3__py3-none-any.whl

zombie_squirrel/__init__.py

@@ -3,7 +3,7 @@
 Provides functions to fetch and cache project names, subject IDs, and asset
 metadata from the AIND metadata database with support for multiple backends."""
 
-__version__ = "0.8.1"
+__version__ = "0.8.3"
 
 from zombie_squirrel.acorn_contents.asset_basics import asset_basics  # noqa: F401
 from zombie_squirrel.acorn_contents.raw_to_derived import raw_to_derived  # noqa: F401

zombie_squirrel/acorn_contents/__init__.py

@@ -1,6 +1,5 @@
 """Acorns module: individual data fetching functions."""
 
-# Import the acorn modules to trigger decorator registration
 from zombie_squirrel.acorn_contents import (  # noqa: F401
     asset_basics,
     raw_to_derived,

zombie_squirrel/acorn_contents/asset_basics.py

@@ -37,6 +37,11 @@ def asset_basics(force_update: bool = False) -> pd.DataFrame:
         "location",
     ]
 
+    if df.empty and not force_update:
+        raise ValueError(
+            "Cache is empty. Use force_update=True to fetch data from database."
+        )
+
     if df.empty or force_update:
         logging.info("Updating cache for asset basics")
         df = pd.DataFrame(

zombie_squirrel/acorn_contents/raw_to_derived.py

@@ -22,6 +22,11 @@ def raw_to_derived(force_update: bool = False) -> pd.DataFrame:
         DataFrame with _id and derived_records columns."""
     df = acorns.TREE.scurry(acorns.NAMES["r2d"])
 
+    if df.empty and not force_update:
+        raise ValueError(
+            "Cache is empty. Use force_update=True to fetch data from database."
+        )
+
     if df.empty or force_update:
         logging.info("Updating cache for raw to derived mapping")
         client = MetadataDbClient(
@@ -50,9 +55,10 @@ def raw_to_derived(force_update: bool = False) -> pd.DataFrame:
             source_data_list = derived_record.get("data_description", {}).get("source_data", [])
             derived_id = derived_record["_id"]
             # Add this derived record to each raw record it depends on
-            for source_id in source_data_list:
-                if source_id in raw_to_derived_map:
-                    raw_to_derived_map[source_id].append(derived_id)
+            if source_data_list:
+                for source_id in source_data_list:
+                    if source_id in raw_to_derived_map:
+                        raw_to_derived_map[source_id].append(derived_id)
 
         # Convert to DataFrame
         data = []

zombie_squirrel/acorn_contents/source_data.py

@@ -22,6 +22,11 @@ def source_data(force_update: bool = False) -> pd.DataFrame:
         DataFrame with _id and source_data columns."""
     df = acorns.TREE.scurry(acorns.NAMES["d2r"])
 
+    if df.empty and not force_update:
+        raise ValueError(
+            "Cache is empty. Use force_update=True to fetch data from database."
+        )
+
     if df.empty or force_update:
         logging.info("Updating cache for source data")
         client = MetadataDbClient(

zombie_squirrel/acorn_contents/unique_project_names.py

@@ -22,6 +22,11 @@ def unique_project_names(force_update: bool = False) -> list[str]:
         List of unique project names."""
     df = acorns.TREE.scurry(acorns.NAMES["upn"])
 
+    if df.empty and not force_update:
+        raise ValueError(
+            "Cache is empty. Use force_update=True to fetch data from database."
+        )
+
     if df.empty or force_update:
         # If cache is missing, fetch data
         logging.info("Updating cache for unique project names")

zombie_squirrel/acorn_contents/unique_subject_ids.py

@@ -22,6 +22,11 @@ def unique_subject_ids(force_update: bool = False) -> list[str]:
         List of unique subject IDs."""
     df = acorns.TREE.scurry(acorns.NAMES["usi"])
 
+    if df.empty and not force_update:
+        raise ValueError(
+            "Cache is empty. Use force_update=True to fetch data from database."
+        )
+
     if df.empty or force_update:
         # If cache is missing, fetch data
         logging.info("Updating cache for unique subject IDs")

{zombie_squirrel-0.8.1.dist-info → zombie_squirrel-0.8.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: zombie-squirrel
-Version: 0.8.1
+Version: 0.8.3
 Summary: Generated from aind-library-template
 Author: Allen Institute for Neural Dynamics
 License: MIT

zombie_squirrel-0.8.3.dist-info/RECORD

@@ -0,0 +1,16 @@
+zombie_squirrel/__init__.py,sha256=46-EAdFSa5UsVaOENsqKKw2wVBlGRDrQojdWE4SU14s,693
+zombie_squirrel/acorns.py,sha256=BLhySoLfb7D6IfbNMOhxbLJba-8Wp-L9e1w_2KozjjM,1134
+zombie_squirrel/forest.py,sha256=v0K1u0EA0OptzxocFC-fPEi6xYcnJ9SoWJ6aiPF4jLg,2939
+zombie_squirrel/sync.py,sha256=9cpfSzTj0cQz4-d3glMAOejCZgekMirLc-dwEFFQhlg,496
+zombie_squirrel/utils.py,sha256=kojQpHUKlRJD7WEZDfcpQIZTj9iUrtX5_6F-gWWzJW0,628
+zombie_squirrel/acorn_contents/__init__.py,sha256=N4Wun9kn44_nCwV4g6naEVzf76ozOgEoupAHLYpiGsI,224
+zombie_squirrel/acorn_contents/asset_basics.py,sha256=EZ4jGiO2JYyMZuhZ0DsCyOtEk2jL_oAqAO6HPVwrhY8,5669
+zombie_squirrel/acorn_contents/raw_to_derived.py,sha256=Ld9gbYDmg6hVvB4ai_T1A4mAiU7shSq_ZEDSg4HPJ3M,2646
+zombie_squirrel/acorn_contents/source_data.py,sha256=XoepH1EZUYy4QTLzXW5sP8zBn1mjoMVDLtWfy0TPHoA,1683
+zombie_squirrel/acorn_contents/unique_project_names.py,sha256=k0ePwdrDHDe5rvdPZOfL1X9VlsUZcMtTkUWDw_vuZkw,1445
+zombie_squirrel/acorn_contents/unique_subject_ids.py,sha256=nsew2-bHCcmxfaYCWzjUEx9T2cohL_E7OuRsQjJl8KY,1416
+zombie_squirrel-0.8.3.dist-info/licenses/LICENSE,sha256=U0Y7B3gZJHXpjJVLgTQjM8e_c8w4JJpLgGhIdsoFR1Y,1092
+zombie_squirrel-0.8.3.dist-info/METADATA,sha256=HpbkwFYI5U0OzKDRyYUXASOjxlcbUks6GmL-EreBt4U,1898
+zombie_squirrel-0.8.3.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
+zombie_squirrel-0.8.3.dist-info/top_level.txt,sha256=FmM0coe4AangURZLjM4JwwRv2B8H6oINYCoZLKLDCKA,16
+zombie_squirrel-0.8.3.dist-info/RECORD,,

zombie_squirrel-0.8.1.dist-info/RECORD

@@ -1,16 +0,0 @@
-zombie_squirrel/__init__.py,sha256=sPD8B2awlREi8c33mhKoGw0khdE5u1XQmU_3hWiVH9A,693
-zombie_squirrel/acorns.py,sha256=BLhySoLfb7D6IfbNMOhxbLJba-8Wp-L9e1w_2KozjjM,1134
-zombie_squirrel/forest.py,sha256=v0K1u0EA0OptzxocFC-fPEi6xYcnJ9SoWJ6aiPF4jLg,2939
-zombie_squirrel/sync.py,sha256=9cpfSzTj0cQz4-d3glMAOejCZgekMirLc-dwEFFQhlg,496
-zombie_squirrel/utils.py,sha256=kojQpHUKlRJD7WEZDfcpQIZTj9iUrtX5_6F-gWWzJW0,628
-zombie_squirrel/acorn_contents/__init__.py,sha256=LsNy5xjlJS981SVxRLD4yPhUg__fuY8-HbPDapOhH-o,285
-zombie_squirrel/acorn_contents/asset_basics.py,sha256=cTg016sZbrJH5_As7CqnirumR1hSMn4GiYX0IReoou0,5513
-zombie_squirrel/acorn_contents/raw_to_derived.py,sha256=EFjLP9szzk3Q6jNhyDwxx8rqhG1bFTVmxeCpCAsv6yg,2445
-zombie_squirrel/acorn_contents/source_data.py,sha256=zbw3DnTwXo6xDTZ1uCoIbcYrVBH2r2xZN3trKtxT8cg,1527
-zombie_squirrel/acorn_contents/unique_project_names.py,sha256=Fu0P2DyI91W7xhx1uRk2YVMyFG8WPihDCj7n_A7zL2E,1289
-zombie_squirrel/acorn_contents/unique_subject_ids.py,sha256=dOVn1ObDF86p8S8US__hlyjTGxT0vz01oeGzjoWGFIc,1260
-zombie_squirrel-0.8.1.dist-info/licenses/LICENSE,sha256=U0Y7B3gZJHXpjJVLgTQjM8e_c8w4JJpLgGhIdsoFR1Y,1092
-zombie_squirrel-0.8.1.dist-info/METADATA,sha256=xEQ04ahuoz0XhbxLpAUCYFLG1kj6VSV2RFMfRtAq1PY,1898
-zombie_squirrel-0.8.1.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
-zombie_squirrel-0.8.1.dist-info/top_level.txt,sha256=FmM0coe4AangURZLjM4JwwRv2B8H6oINYCoZLKLDCKA,16
-zombie_squirrel-0.8.1.dist-info/RECORD,,