zombie-squirrel 0.5.2__py3-none-any.whl → 0.6.1__py3-none-any.whl

zombie_squirrel/__init__.py

@@ -3,7 +3,7 @@
 Provides functions to fetch and cache project names, subject IDs, and asset
 metadata from the AIND metadata database with support for multiple backends."""
 
-__version__ = "0.5.2"
+__version__ = "0.6.1"
 
 from zombie_squirrel.squirrels import (  # noqa: F401
     asset_basics,

zombie_squirrel/squirrels.py

@@ -144,6 +144,7 @@ def asset_basics(force_update: bool = False) -> pd.DataFrame:
         "acquisition.acquisition_end_time",
         "processing.data_processes.start_date_time",
         "subject.subject_details.genotype",
+        "other_identifiers",
         "location",
     ]
 
@@ -159,6 +160,7 @@ def asset_basics(force_update: bool = False) -> pd.DataFrame:
                 "subject_id",
                 "acquisition_start_time",
                 "acquisition_end_time",
+                "code_ocean",
                 "process_date",
                 "genotype",
                 "location",
@@ -212,6 +214,13 @@ def asset_basics(force_update: bool = False) -> pd.DataFrame:
             else:
                 process_date = None
 
+            # Get the CO asset ID
+            other_identifiers = record.get("other_identifiers", {})
+            if other_identifiers:
+                code_ocean = other_identifiers.get("Code Ocean", None)
+            else:
+                code_ocean = None
+
             flat_record = {
                 "_id": record["_id"],
                 "_last_modified": record.get("_last_modified", None),
@@ -221,6 +230,7 @@ def asset_basics(force_update: bool = False) -> pd.DataFrame:
                 "subject_id": record.get("subject", {}).get("subject_id", None),
                 "acquisition_start_time": record.get("acquisition", {}).get("acquisition_start_time", None),
                 "acquisition_end_time": record.get("acquisition", {}).get("acquisition_end_time", None),
+                "code_ocean": code_ocean,
                 "process_date": process_date,
                 "genotype": record.get("subject", {}).get("subject_details", {}).get("genotype", None),
                 "location": record.get("location", None),

{zombie_squirrel-0.5.2.dist-info → zombie_squirrel-0.6.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: zombie-squirrel
-Version: 0.5.2
+Version: 0.6.1
 Summary: Generated from aind-library-template
 Author: Allen Institute for Neural Dynamics
 License: MIT
@@ -21,7 +21,7 @@ Dynamic: license-file
 ![Code Style](https://img.shields.io/badge/code%20style-black-black)
 [![semantic-release: angular](https://img.shields.io/badge/semantic--release-angular-e10079?logo=semantic-release)](https://github.com/semantic-release/semantic-release)
 ![Interrogate](https://img.shields.io/badge/interrogate-100.0%25-brightgreen)
-![Coverage](https://img.shields.io/badge/coverage-100%25-brightgreen)
+![Coverage](https://img.shields.io/badge/coverage-99%25-brightgreen)
 ![Python](https://img.shields.io/badge/python->=3.10-blue?logo=python)
 
 <img src="zombie-squirrel_logo.png" width="400" alt="Logo (image from ChatGPT)">
@@ -30,9 +30,6 @@ Dynamic: license-file
 
 ```bash
 pip install zombie-squirrel
-
-```bash
-uv sync
 ```
 
 ## Usage
@@ -40,11 +37,10 @@ uv sync
 ### Set backend
 
 ```bash
-export REDSHIFT_SECRETS='/aind/prod/redshift/credentials/readwrite'
-export TREE_SPECIES='REDSHIFT'
+export TREE_SPECIES='s3'
 ```
 
-Options are 'REDSHIFT', 'MEMORY'.
+Options are 's3', 'MEMORY'.
 
 ### Scurry (fetch) data
 

zombie_squirrel-0.6.1.dist-info/RECORD

@@ -0,0 +1,10 @@
+zombie_squirrel/__init__.py,sha256=v9cqU6rYDVeeVPFLDyhe6N28mEP2j7vXb8R98nwc--0,409
+zombie_squirrel/acorns.py,sha256=mpinFacaN9BM6CvRy0M76JMb6n3oVPZLJxn8O4J9Wlw,2945
+zombie_squirrel/squirrels.py,sha256=JWO0ihe7J3P9HbrSA4DHG3-o7EhM93WiwtxC2yVD0L0,12262
+zombie_squirrel/sync.py,sha256=84Ta5beHiPuGBVzp9SCo7G1b4McTUohcUIf_TJbNIV8,518
+zombie_squirrel/utils.py,sha256=kojQpHUKlRJD7WEZDfcpQIZTj9iUrtX5_6F-gWWzJW0,628
+zombie_squirrel-0.6.1.dist-info/licenses/LICENSE,sha256=U0Y7B3gZJHXpjJVLgTQjM8e_c8w4JJpLgGhIdsoFR1Y,1092
+zombie_squirrel-0.6.1.dist-info/METADATA,sha256=vywgegMbrLaSk7VdS_L3cT0PT9YD53nRA3o1mKUEVqc,1893
+zombie_squirrel-0.6.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+zombie_squirrel-0.6.1.dist-info/top_level.txt,sha256=FmM0coe4AangURZLjM4JwwRv2B8H6oINYCoZLKLDCKA,16
+zombie_squirrel-0.6.1.dist-info/RECORD,,

zombie_squirrel-0.5.2.dist-info/RECORD

@@ -1,10 +0,0 @@
-zombie_squirrel/__init__.py,sha256=KZsMdWYM4SLPDVJh0hBmNbNouqd7-KFxEsMG-VB1-IU,409
-zombie_squirrel/acorns.py,sha256=mpinFacaN9BM6CvRy0M76JMb6n3oVPZLJxn8O4J9Wlw,2945
-zombie_squirrel/squirrels.py,sha256=PwLhJdpNZZCWIdqb3-MA3VRzCMf1tWwKcCxpTMbIjn0,11901
-zombie_squirrel/sync.py,sha256=84Ta5beHiPuGBVzp9SCo7G1b4McTUohcUIf_TJbNIV8,518
-zombie_squirrel/utils.py,sha256=kojQpHUKlRJD7WEZDfcpQIZTj9iUrtX5_6F-gWWzJW0,628
-zombie_squirrel-0.5.2.dist-info/licenses/LICENSE,sha256=U0Y7B3gZJHXpjJVLgTQjM8e_c8w4JJpLgGhIdsoFR1Y,1092
-zombie_squirrel-0.5.2.dist-info/METADATA,sha256=TPPXZYGlj_QbYlCu8d-ewMj0o6vETxmU3UdlKf8VvWE,1991
-zombie_squirrel-0.5.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-zombie_squirrel-0.5.2.dist-info/top_level.txt,sha256=FmM0coe4AangURZLjM4JwwRv2B8H6oINYCoZLKLDCKA,16
-zombie_squirrel-0.5.2.dist-info/RECORD,,