zea 0.0.4__py3-none-any.whl → 0.0.6__py3-none-any.whl

{zea-0.0.4.dist-info → zea-0.0.6.dist-info}/RECORD

@@ -1,13 +1,13 @@
-zea/__init__.py,sha256=-et4Iz8oJRRaQahurztVr7Rvz9Do7WkXfq5D5CuhX7w,2274
-zea/__main__.py,sha256=QQaxECJxTUo99q43OobV1Tc9m4POtmjRbeKqpkCZ4Lo,2020
+zea/__init__.py,sha256=C93vEqaOeNObiK-tGmSFrpJ9pAsYEuOltmhGMaKpXuY,2345
+zea/__main__.py,sha256=4OCFujuZ5ooIDMF7xxE4Esin9dfFlgX9PdOi9uB64y8,1569
 zea/agent/__init__.py,sha256=uJjMiPvvCXmUxC2mkSkh1Q9Ege0Vf7WazKX1_Ul80GY,924
 zea/agent/gumbel.py,sha256=WbvSrM8meXtZmDLkyXDGUyRzjB4dWZmNO_qzloRxB_s,3770
 zea/agent/masks.py,sha256=qdSGbTs9449hUxcX6gAl_s47mrs1FKI6U_T2KjS-iz8,6581
-zea/agent/selection.py,sha256=j9FejT28jRGnRIEL6F1YZYdl22G0XxKOkua9qhKavIg,19764
-zea/backend/__init__.py,sha256=9evPyuxJtIeleZlX_eAggJtxxKRofLQiD_ZV3yARg2Y,4227
+zea/agent/selection.py,sha256=ut8I_TcfcoDRQnBBsxiVjNqjFp_PLNNHxgoE1FTP4rw,27072
+zea/backend/__init__.py,sha256=XiBtxpXMYgcSBXjJ-uEWh7a92XqWs-4uDUh6NeKeUE4,6922
 zea/backend/autograd.py,sha256=buWy19ctDFsAoktZaLm5qyLN9nQRicI91-V3ND-t3f4,6868
-zea/backend/jax/__init__.py,sha256=kU89ZZeVQOm9tdrlGSLLlkrJzhUNW0wOet5lnU5BMPU,2168
-zea/backend/tensorflow/__init__.py,sha256=sD7phu-iUwcZKSYVMYMJkEqOZm7TBHbiIE6oYiKV3Go,2027
+zea/backend/jax/__init__.py,sha256=AvO6tUDTMiyrRuY_M2KKwUpzzzqWIRlSh3NhI_lcw9w,1056
+zea/backend/tensorflow/__init__.py,sha256=FQAMCrUgvHm4LCVfnP9sXGACQSMFx3nIarPve_MgxYM,422
 zea/backend/tensorflow/dataloader.py,sha256=yM25UPhoRBm46ePkIQ-QQZ_9gZfCaqhdC_Gzf57eLNE,14394
 zea/backend/tensorflow/layers/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 zea/backend/tensorflow/layers/apodization.py,sha256=Pi5GpkoMSwPq8_FL1fqkuGINmOD-sIHkHXEtF62VNSc,826
@@ -21,7 +21,7 @@ zea/backend/tensorflow/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
 zea/backend/tensorflow/utils/callbacks.py,sha256=4biWDzQiqgnmE8YWF9mlxLZGxrVMMs-cpgBZI7iD2oI,57
 zea/backend/tensorflow/utils/utils.py,sha256=4uOLfbxko2xUsyVjw7bClTdLkif7-NYscIo7ljqON6U,1050
 zea/backend/tf2jax.py,sha256=qld6VecFEVOpUI4wUqA8wj9xvpsIjH2o72TcQqOyxbY,384
-zea/backend/torch/__init__.py,sha256=i9RT8-oyxmiDy4US6wy2s7vGIk8UBi0RHpX47qi9qDU,2272
+zea/backend/torch/__init__.py,sha256=YMNTzqRqhPu7pjGPczupT3jo4SwjYpI8Ch97GI0OPDg,1119
 zea/backend/torch/losses.py,sha256=7ITD_p630eyJzjgAT79XUNiff7XmW-naMGOUgKFnAAQ,2114
 zea/beamform/__init__.py,sha256=rlRy-Og_KsbnU4Qm0NR8SP5ymePCwSr2aMW9jjOaeHI,1018
 zea/beamform/beamformer.py,sha256=KLVNkQ6Af3De2FB0z0VNpLftc8SDw5SpR0oNPmQReSM,18388
@@ -32,7 +32,7 @@ zea/beamform/phantoms.py,sha256=zow6j4mPXOJjSl31dLQbuDW8rH_qEV2dsfcy-TqkhkI,1108
 zea/beamform/pixelgrid.py,sha256=XONJqgWC9XUkEL7iaphy0YBr6xLAyXz-yaTdPQju1r0,5432
 zea/config.py,sha256=mhmTxD1ylyc6zl7yq834-BUiBpcqJ-sNVnJd38yinCs,19509
 zea/data/__init__.py,sha256=h2wKll096dKxTRrEKHnFmgURqp9lDHlqJM884HzmhSY,1757
-zea/data/__main__.py,sha256=3KKsj-8ZL1k8vWE7mZkGJyn5xfzVTSK_MaplUgXIUCo,857
+zea/data/__main__.py,sha256=xEXj3m3gJ6MoV1f9WbDl3QVPMbDXedTj1J9WeT83NrI,909
 zea/data/augmentations.py,sha256=R09_dVkhOFGHiiVFaTjP9pYcHCMtwri9Nz8wsM5mRPY,12686
 zea/data/convert/__init__.py,sha256=xuPIB-Dd8voTTRoQr-Mb5KTbPpWzk46alCgKQ_EZqzY,244
 zea/data/convert/camus.py,sha256=PgFN6b0AgHZRS0JjcsiOGOzoagG-sHvlmhDuNR6iNKo,9555
@@ -46,60 +46,67 @@ zea/data/convert/picmus.py,sha256=1TK1vDWzfHmnFErtt0ad36TInIiy4fm3nMmfx83G5nw,62
 zea/data/data_format.py,sha256=n4OTQKl1newgvTamlPprAsRubAVt3bPeNYHJXNc89G0,25684
 zea/data/dataloader.py,sha256=ZAlWbZB6F43EtLvRcUzfeHVtMhYViJTvyaRb9CmpEFc,14865
 zea/data/datasets.py,sha256=XcNlJVmkfNo7TXp80y4Si_by75Ix2ULIU_iEiNEhl6Q,24492
-zea/data/file.py,sha256=dG6if-hofBzfOTr_39_X_OFlTx7t8s7ggrYR7XwyhI8,29387
-zea/data/layers.py,sha256=Tv_dEIX6DZPTVjVMYSPomz1wtkEMrAcX9u9gQkJPRrY,6737
+zea/data/file.py,sha256=DJHqYlVDNZtQWj0VvytrdGeZEnpDJqc2zZPWz3rF_7k,27152
+zea/data/layers.py,sha256=vAVBJJOd0cRp2vxjk01aP6PTWzJfBEO6Lx54Jj9gldg,6714
 zea/data/preset_utils.py,sha256=mJ7YC7W9X91__V6Wk2xenORIqZ0reZQerbX3zgapBJM,4408
 zea/data/utils.py,sha256=Y8eO7DznJFiq89SUQmDdiYetQ3aHjf72sC8ih9ooht4,2687
 zea/datapaths.py,sha256=SzsgW4KuZ72aieUbKTUPBmErEPPNcthgI01ixrKX0RQ,20239
-zea/display.py,sha256=nvtef82SiOVZJxm8FgykueIsR7yv8pfGIWOLW4XB_lE,24419
+zea/display.py,sha256=tIrPY2wcQFhdsijgydeNkZviZHkVZDtpz4lFAyPzRv0,24250
+zea/doppler.py,sha256=PG8-GhgTxo2eUjFQ2D6Ag74HD2SkJa6b5LUQjXCS8a8,2994
 zea/interface.py,sha256=2xa3wSNwVlESBa3hWqsJIypjnemioPUGJxEgwl4mDXY,18176
+zea/internal/_generate_keras_ops.py,sha256=0K64fBSDBirTGiwP_qPPT4gdrGwVvKLzPylbHzT-qus,3853
 zea/internal/cache.py,sha256=JHbWJ2vXz_NnXWHXrfSKAhcvi1_JMMeQnBzQIrSlYBo,10559
 zea/internal/checks.py,sha256=Dj8kMY0BY5M170V7NmM9TENyiI7tb6wT9tG6jdrxy-0,10809
 zea/internal/config/create.py,sha256=f8dy6YcAUZbROxwCvORI26ACMRO4Q7EL188KyTL8Bpk,5447
 zea/internal/config/parameters.py,sha256=3YE8aBeiosxTuIT0RAEEMkJPmkykSyZZ7hbmmyGnsuc,6602
 zea/internal/config/validation.py,sha256=vPGFWC-UVtNh8jqfQ4V8HTUIjfnOtsJrqcG2R2ae5hg,6522
-zea/internal/convert.py,sha256=EDg6vY73vQht-AwwrYUJ2XrE2L64qL3JBXxnft7Xw70,4596
-zea/internal/core.py,sha256=QAiN1yFgIm8PGTn8RyE3LyZd5YWpbxuSGwbjfbEYJzU,9387
-zea/internal/device.py,sha256=pcgKHWudolflxe6umQh5DVNDz8QtQBZ8tDiWDNwTays,15175
+zea/internal/core.py,sha256=wJHqp3h_MCCkugTPpvmsxNIOOQ6_VAF7-skNUY-bvmc,9587
+zea/internal/device.py,sha256=YM-yuB2wu8hmILP84LfIjxmcLq9mI6FMI_iS8Lr04i0,15841
 zea/internal/git_info.py,sha256=vEeN7cdppNIJPRkC69pUQqtAfTdwCN-tpfo702xpGzY,1040
-zea/internal/operators.py,sha256=0CMv4s0k8MIlD0uMKcxiHq4YryIfacklBFnCqf7RO0A,1837
-zea/internal/parameters.py,sha256=MbYYQQuESQtzXA1b7S3psESdfTbntzQCgljkV_zTlLw,17857
-zea/internal/registry.py,sha256=lQsJbYUz1S2eKzE-7shRYWUBulX2TjHTRN37evrYIGA,7884
+zea/internal/notebooks.py,sha256=57qBEJMzLIfWndZslQ6NphJgU4Wlu_jL_XgDWft_xkY,1136
+zea/internal/operators.py,sha256=F4J5R6L_VBfq5JbYKtqXuMQqk1q-L-n3JaOakcX_fDg,2005
+zea/internal/parameters.py,sha256=kyHbEg0otKN-_kPFPIg4iaHSNBJ-TitFmhahR5DRhlk,19871
+zea/internal/registry.py,sha256=DYwZsz5p4zheW1D3DEqKPS5unFbGF2YOvsm55ypTeaQ,7867
 zea/internal/setup_zea.py,sha256=P8dmHk_0hwfukaf-DfPxeDofOH4Kj1s5YvUs8yeFqAQ,7800
-zea/internal/viewer.py,sha256=VsDehOQgqvVp7gkw0kz2Y2v_My8P8FshJEOCM4E0RIk,15745
-zea/io_lib.py,sha256=z65zGUDaRsxeYnddgy9LtEkbHfKhW3O3wPumqozjZvg,12527
+zea/internal/viewer.py,sha256=nXTJwaWM9x8_R3X8YB9B5bNkZwwfVGKUu8pIr2HMweQ,15840
+zea/io_lib.py,sha256=9yjiYQmoyaJ6IYo4SuNZ5ofX8DB67mbypvmKxd8iZqk,12506
+zea/keras_ops.py,sha256=QUN8sX3tNvyxXPcabiE2V41EJNFDIDBdOrwDscPL1aE,65461
 zea/log.py,sha256=UJIL91lHUgWc-vrlJWOn1PX60fX3TFQ5slIs-b5EWEQ,10540
-zea/metrics.py,sha256=22BonPRPs6sfpDqtSEQGC1icNhsSywBak4iaf_1cook,4894
-zea/models/__init__.py,sha256=gBW1pXrD01beK10dlV6GeY6H17Ym_6wrzMDXrbUs1dk,4183
+zea/metrics.py,sha256=88nsFP3pKeoMvNQaDKA6w-NFX8KRauhhc0CWzOtsiZ4,15241
+zea/models/__init__.py,sha256=xeyo23kLfXCEy92eev4qLVVA2oSVWsN1XXEMsuwrlBU,4325
 zea/models/base.py,sha256=_l1RlXIYS2V5py-en5llJpX1oU0IXK_hzLhfCYybzHg,7121
 zea/models/carotid_segmenter.py,sha256=qxv4xSSbwLQ3AWeP8xoVCFhpPLOqsN-4dNq1ECkG3FM,5401
+zea/models/deeplabv3.py,sha256=Ew-JIaQgekumVZN--pIQ5XQR5xTj1qMbfLm_xQH9qYo,4967
 zea/models/dense.py,sha256=EwrSawfSTi9oWE55Grr7jtwLXC9MNqEOO3su4oYHqfg,4067
-zea/models/diffusion.py,sha256=DJhrV_NGgRFK8p3kIBelM-0mqvmuDbdxRyWugaftv-0,31841
+zea/models/diffusion.py,sha256=-SS0ZGmwpRFeUdQyFIpKDYgi-ImLolSrFNJosYFBuLM,31971
 zea/models/echonet.py,sha256=toLw6QjpdROvGrm6VEuqHuxxKkiAWtX-__5YzrE-LJA,6346
+zea/models/echonetlvh.py,sha256=8HBbm6jJFMkORzM_-IiBDARq4fGzaWyh0TLcCv8hlxw,10474
 zea/models/generative.py,sha256=iujicyFDuCD7NEk_cZ8thlZ2Rl3Qa8LfkwPsZdWYpR0,2625
 zea/models/gmm.py,sha256=6YYoiizsD7BtISOToEXkki6Cc8iXMkgmPH_rMFQKs3E,8324
 zea/models/layers.py,sha256=hhtBLQgt6ZMKj60FXBNIpThI7gZZeEqkzBMsub_TNFM,1920
 zea/models/lpips.py,sha256=ryJSg2_XIZyOyPP-fcEQKsz3JzlDl9ik4TZPipVbomw,6126
+zea/models/lv_segmentation.py,sha256=UjWbG3WaOPdEvcVH-a_jSOe4Se2WbKaFCejwjFrWpUU,2952
 zea/models/preset_utils.py,sha256=OEs13M92W3NH_lB5_dCvJSNqdW0-QQwKw87QMZg06O4,15396
-zea/models/presets.py,sha256=drTQF2XCAxMFSqZtu_6m-kpPtcG6io4DrXsBcdFss-4,2623
+zea/models/presets.py,sha256=cTQRoCBRRFUEFKKS1GGJGDNXRoydRYF9psifBEoO0Y0,4215
+zea/models/regional_quality.py,sha256=2VznMVENi0r9BVfb0y10NeVOOyHSkv7cvjAYfXw0MAA,4280
 zea/models/taesd.py,sha256=Vab5jywo4uxXPXMQ-8VdpOMhVwQsEc_PNztctDzFZfk,8403
 zea/models/unet.py,sha256=B_600WLn3jj_BuhDdRrj5I1XQIHylaQQN8ISq-vt7zM,6392
 zea/models/utils.py,sha256=My6VY27S4udOn7xatIM22Qgn8jED1FmnA2yZw1mcuVw,2015
-zea/ops.py,sha256=wgm_p1rbQFFQ5856u2SIYGGTv3dFaJR1ogdMkiteChc,109464
+zea/ops.py,sha256=1ZtqM5UVCjRrkF5ip8qS-Di48F3BpLZ7J_Z_aWZt4sE,109602
 zea/probes.py,sha256=991X4ilpMablekNxAHwBU6DoBIZHrmzoJgs2C6zfU0U,7632
-zea/scan.py,sha256=dp-PiQZWk4HnRROeu6cwrGcM8FNjezDzkF05ZJcacVI,26935
+zea/scan.py,sha256=vtF60IgP6V2I5wfvT__ZngfFmhqtEGl5LlbCqSEATw0,27339
 zea/simulator.py,sha256=KziYNRNAwIyKNE4nzVp2cbNyLATaaUkF-Ity6O1fx20,11279
-zea/tensor_ops.py,sha256=TA8N9o8fg6sf-d8JFbMDZAeNzyOBOMbLY--guf2HCjE,48284
+zea/tensor_ops.py,sha256=_vK2vHs0bEZOzf8PVjYXBNm4qwaI86A67n4mBjpWnmY,56814
 zea/tools/__init__.py,sha256=QunH0W09HdOLYq2rNyNJCajfZgarLjX-ymiHVwjR9Kg,259
-zea/tools/fit_scan_cone.py,sha256=Pw1kiXUAXenCVIO1nfqWVne2i0eWWXHFmoAQ7l_Qzro,24635
+zea/tools/fit_scan_cone.py,sha256=0T6PSmMVb8DmU9yLAc-nqZFd5lhTRMxYCvmDmF3Klx8,24672
 zea/tools/hf.py,sha256=ibuTGaLitK1vOlQdZJuVmDBoUkYRrEfCctj3kiiOQGs,5477
-zea/tools/selection_tool.py,sha256=dNksdVw_sNcelAyszbrseOTQRDxJpwlapabdh7feNoQ,29848
+zea/tools/selection_tool.py,sha256=nEALcrHGLb4NzRRcN_bxYCwzVyHKNN6Y21Q9jsuPFI8,30514
 zea/tools/wndb.py,sha256=8XY056arnDKpVV7k-B5PrMa-RANur3ldPSR4GW3jgS4,666
 zea/utils.py,sha256=8gxZaojsC0D2S63gs6lN0ulcSJ1jry3AzOMFvBdl4H4,23351
 zea/visualize.py,sha256=4-bEHRYG3hUukmBkx7x4VBoa3oAJffO3HnnnzTfduDE,23905
 zea/zea_darkmode.mplstyle,sha256=wHTXkgy00tLEbRmr8GZULb5zIzU0MTMn9xC0Z3WT7Bo,42141
-zea-0.0.4.dist-info/LICENSE,sha256=z8d0m5b2O9McPEK1xHG_dWgUBT6EfBDz6wA0F7xSPTA,11358
-zea-0.0.4.dist-info/METADATA,sha256=VL_XaEx_hcxAPQTU2EcGEaz1RfYxbZ5p_5XRfmqOA6Q,6489
-zea-0.0.4.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-zea-0.0.4.dist-info/entry_points.txt,sha256=hQcQYCHdMu2LRM1PGZuaGU5EwAjTGErC-QakgwZKZeo,41
-zea-0.0.4.dist-info/RECORD,,
+zea-0.0.6.dist-info/METADATA,sha256=APlH2sS2gJmC9gv9hwMEYzpnNX0mRpp9CXe_zC0wl98,6780
+zea-0.0.6.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
+zea-0.0.6.dist-info/entry_points.txt,sha256=hQcQYCHdMu2LRM1PGZuaGU5EwAjTGErC-QakgwZKZeo,41
+zea-0.0.6.dist-info/licenses/LICENSE,sha256=z8d0m5b2O9McPEK1xHG_dWgUBT6EfBDz6wA0F7xSPTA,11358
+zea-0.0.6.dist-info/RECORD,,

{zea-0.0.4.dist-info → zea-0.0.6.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.1.3
+Generator: poetry-core 2.2.1
 Root-Is-Purelib: true
 Tag: py3-none-any

zea/internal/convert.py

@@ -1,150 +0,0 @@
-"""This module contains functionality for converting between hdf5, mat and
-dictionary.
-
-"""
-
-import argparse
-from pathlib import Path
-
-import h5py
-import numpy as np
-import scipy.io as sio
-
-from zea.data.file import recursively_load_dict_contents_from_group
-from zea.internal.viewer import filename_from_window_dialog
-
-
-def load_mat(filename):
-    """
-    This function should be called instead of direct scipy.io.loadmat
-    as it cures the problem of not properly recovering python dictionaries
-    from mat files. It calls the function check keys to cure all entries
-    which are still mat-objects
-    """
-
-    def _check_vars(d):
-        """
-        Checks if entries in dictionary are mat-objects. If yes
-        todict is called to change them to nested dictionaries
-        """
-        for key in d:
-            if isinstance(d[key], sio.matlab.mio5_params.mat_struct):
-                d[key] = _todict(d[key])
-            elif isinstance(d[key], np.ndarray):
-                d[key] = _toarray(d[key])
-        return d
-
-    def _todict(matobj):
-        """
-        A recursive function which constructs from matobjects nested dictionaries
-        """
-        d = {}
-        for strg in matobj._fieldnames:
-            elem = matobj.__dict__[strg]
-            if isinstance(elem, sio.matlab.mio5_params.mat_struct):
-                d[strg] = _todict(elem)
-            elif isinstance(elem, np.ndarray):
-                d[strg] = _toarray(elem)
-            else:
-                d[strg] = elem
-        return d
-
-    def _toarray(ndarray):
-        """
-        A recursive function which constructs ndarray from cellarrays
-        (which are loaded as numpy ndarrays), recursing into the elements
-        if they contain matobjects.
-        """
-        if ndarray.dtype != "float64":
-            elem_list = []
-            for sub_elem in ndarray:
-                if isinstance(sub_elem, sio.matlab.mio5_params.mat_struct):
-                    elem_list.append(_todict(sub_elem))
-                elif isinstance(sub_elem, np.ndarray):
-                    elem_list.append(_toarray(sub_elem))
-                else:
-                    elem_list.append(sub_elem)
-            return np.array(elem_list)
-        else:
-            return ndarray
-
-    data = sio.loadmat(filename, struct_as_record=False, squeeze_me=True)
-    return _check_vars(data)
-
-
-def save_dict_to_file(filename, dic):
-    """Save dict to .mat or .hdf5"""
-
-    filetype = Path(filename).suffix
-    assert filetype in [".mat", ".hdf5"]
-
-    if filetype == ".hdf5":
-        with h5py.File(filename, "w") as h5file:
-            recursively_save_dict_contents_to_group(h5file, "/", dic)
-    elif filetype == ".mat":
-        sio.savemat(filename, dic)
-
-
-def recursively_save_dict_contents_to_group(h5file, path, dic):
-    """Save dict contents to group"""
-    for key, item in dic.items():
-        if isinstance(item, dict):
-            recursively_save_dict_contents_to_group(h5file, path + key + "/", item)
-        else:
-            h5file[path + key] = item
-
-
-def load_dict_from_file(filename, squeeze=True):
-    """dict from file"""
-    filetype = Path(filename).suffix
-    assert filetype in [".mat", ".hdf5"]
-
-    v_7_3 = False
-    if filetype == ".mat":
-        try:
-            return load_mat(filename)
-        except Exception:
-            v_7_3 = True
-
-    if (filetype == ".hdf5") or (v_7_3 is True):
-        with h5py.File(filename, "r", locking=False) as h5file:
-            return recursively_load_dict_contents_from_group(h5file, "/", squeeze)
-
-
-def strip_matfile_keys(dic):
-    """Strip some unecessary .mat keys"""
-    new_dic = {}
-    for key, val in dic.items():
-        if key not in ["__globals__", "__header__", "__version__"]:
-            new_dic[key] = np.squeeze(val)
-    return new_dic
-
-
-def get_args():
-    """Command line argument parser"""
-    parser = argparse.ArgumentParser()
-    parser.add_argument("--file", default=None, help="hdf5 file or mat file")
-    args = parser.parse_args()
-    return args
-
-
-if __name__ == "__main__":
-    args = get_args()
-    data = {}
-    if args.file is None:
-        file = filename_from_window_dialog(
-            "Choose .mat or .hdf5 file",
-            filetypes=(("mat or hdf5", "*.mat *.hdf5 *.h5"),),
-        )
-    else:
-        file = Path(args.file)
-
-    dic = load_dict_from_file(file)
-    if file.suffix == ".mat":
-        dic = strip_matfile_keys(dic)
-        save_dict_to_file(file.with_suffix(".hdf5"), dic)
-
-    elif file.suffix in [".h5", ".hdf5"]:
-        save_dict_to_file(file.with_suffix(".mat"), dic)
-
-    print(f"Succesfully converted {file}")