zarrsmith 0.6.0__py3-none-any.whl

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Files changed (65) hide show
  1. zarrsmith/__init__.py +9 -0
  2. zarrsmith/_version.py +24 -0
  3. zarrsmith/cli/__arguments.py +729 -0
  4. zarrsmith/cli/__init__.py +0 -0
  5. zarrsmith/cli/zarrsmith.py +912 -0
  6. zarrsmith/microscope_manager/__init__.py +11 -0
  7. zarrsmith/microscope_manager/array_manager.py +133 -0
  8. zarrsmith/microscope_manager/evident_manager.py +373 -0
  9. zarrsmith/microscope_manager/luxendo_manager.py +197 -0
  10. zarrsmith/microscope_manager/microscope_manager.py +262 -0
  11. zarrsmith/microscope_manager/opera_manager.py +98 -0
  12. zarrsmith/microscope_manager/readers.py +57 -0
  13. zarrsmith/microscope_manager/scape_manager.py +201 -0
  14. zarrsmith/microscope_manager/viventis_manager.py +104 -0
  15. zarrsmith/microscope_manager/zarr_manager.py +995 -0
  16. zarrsmith/microscope_manager/zarr_v04_manager.py +30 -0
  17. zarrsmith/microscope_manager/zeiss_manager.py +135 -0
  18. zarrsmith/mosaic_manager/__init__.py +10 -0
  19. zarrsmith/mosaic_manager/fields.py +104 -0
  20. zarrsmith/mosaic_manager/fusion.py +1018 -0
  21. zarrsmith/mosaic_manager/h5_array.py +45 -0
  22. zarrsmith/mosaic_manager/luxendo_mosaic_manager.py +160 -0
  23. zarrsmith/mosaic_manager/mosaic.py +454 -0
  24. zarrsmith/mosaic_manager/opera_mosaic_manager.py +530 -0
  25. zarrsmith/mosaic_manager/readers.py +57 -0
  26. zarrsmith/mosaic_manager/tiff_array.py +106 -0
  27. zarrsmith/mosaic_manager/tile.py +80 -0
  28. zarrsmith/mosaic_manager/zeiss_mosaic_manager.py +22 -0
  29. zarrsmith/napari/__init__.py +0 -0
  30. zarrsmith/napari/_batch_csv.py +28 -0
  31. zarrsmith/napari/_convert_widget.py +1139 -0
  32. zarrsmith/napari/_dataset_helpers.py +57 -0
  33. zarrsmith/napari/_explorer_widget.py +1320 -0
  34. zarrsmith/napari/_export_widget.py +173 -0
  35. zarrsmith/napari/_layout.py +208 -0
  36. zarrsmith/napari/_log.py +79 -0
  37. zarrsmith/napari/_mosaic_widget.py +818 -0
  38. zarrsmith/napari/napari.yaml +34 -0
  39. zarrsmith/napari/resources/zarrsmith-icon.svg +96 -0
  40. zarrsmith/utils/__init__.py +0 -0
  41. zarrsmith/utils/axes.py +254 -0
  42. zarrsmith/utils/chromatic_shift.py +836 -0
  43. zarrsmith/utils/chunks.py +77 -0
  44. zarrsmith/utils/colors.py +89 -0
  45. zarrsmith/utils/create_empty_dataset.py +110 -0
  46. zarrsmith/utils/create_empty_group.py +116 -0
  47. zarrsmith/utils/dataset_ops.py +270 -0
  48. zarrsmith/utils/downsampling.py +182 -0
  49. zarrsmith/utils/metadata.py +89 -0
  50. zarrsmith/utils/ngff.py +939 -0
  51. zarrsmith/utils/ome.py +115 -0
  52. zarrsmith/utils/pyramid.py +115 -0
  53. zarrsmith/utils/subset.py +105 -0
  54. zarrsmith/utils/to_zarr.py +253 -0
  55. zarrsmith/utils/units.py +81 -0
  56. zarrsmith/utils/visualize.py +185 -0
  57. zarrsmith/utils/write_image_region.py +281 -0
  58. zarrsmith/utils/write_label_region.py +60 -0
  59. zarrsmith/utils/zoom.py +71 -0
  60. zarrsmith-0.6.0.dist-info/METADATA +177 -0
  61. zarrsmith-0.6.0.dist-info/RECORD +65 -0
  62. zarrsmith-0.6.0.dist-info/WHEEL +5 -0
  63. zarrsmith-0.6.0.dist-info/entry_points.txt +5 -0
  64. zarrsmith-0.6.0.dist-info/licenses/LICENSE +21 -0
  65. zarrsmith-0.6.0.dist-info/top_level.txt +1 -0
zarrsmith/__init__.py ADDED
@@ -0,0 +1,9 @@
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+ try:
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+ from ._version import version as __version__
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+ except ImportError: # pragma: no cover - only when running from an unbuilt source tree
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+ __version__ = "0.0.0"
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+
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+ from . import microscope_manager
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+ from . import cli
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+
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+ from . import mosaic_manager
zarrsmith/_version.py ADDED
@@ -0,0 +1,24 @@
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+ # file generated by vcs-versioning
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+ # don't change, don't track in version control
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+ from __future__ import annotations
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+
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+ __all__ = [
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+ "__version__",
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+ "__version_tuple__",
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+ "version",
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+ "version_tuple",
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+ "__commit_id__",
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+ "commit_id",
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+ ]
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+
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+ version: str
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+ __version__: str
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+ __version_tuple__: tuple[int | str, ...]
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+ version_tuple: tuple[int | str, ...]
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+ commit_id: str | None
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+ __commit_id__: str | None
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+
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+ __version__ = version = '0.6.0'
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+ __version_tuple__ = version_tuple = (0, 6, 0)
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+
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+ __commit_id__ = commit_id = None