xtgeo 4.14.1__cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl

xtgeo/metadata/metadata.py

@@ -0,0 +1,435 @@
+"""The metadata module, currently experimental.
+
+The metadata works through the various datatypes in XTGeo. For example::
+
+    >>> import xtgeo
+    >>> surf = xtgeo.surface_from_file(surface_dir + "/topreek_rota.gri")
+    >>> surf.metadata.required
+    dict([('ncol', 554),...
+    >>> surf.metadata.optional.mean = surf.values.mean()
+
+"""
+
+from __future__ import annotations
+
+from typing import TYPE_CHECKING, Any
+
+import xtgeo
+from xtgeo.common.constants import UNDEF
+from xtgeo.common.log import null_logger
+
+if TYPE_CHECKING:
+    from datetime import datetime
+
+    from xtgeo.cube.cube1 import Cube
+    from xtgeo.grid3d.grid import Grid, GridProperty
+    from xtgeo.surface.regular_surface import RegularSurface
+    from xtgeo.well.well1 import Well
+
+
+logger = null_logger(__name__)
+
+
+class _OptionalMetaData:
+    """Optional metadata are not required, but keys are limited.
+
+    A limited sets of possible keys are available, and they can modified. This
+    class can also have validation methods.
+    """
+
+    __slots__ = (
+        "_name",
+        "_shortname",
+        "_datatype",
+        "_md5sum",
+        "_description",
+        "_crs",
+        "_datetime",
+        "_deltadatetime",
+        "_visuals",
+        "_domain",
+        "_user",
+        "_field",
+        "_source",
+        "_modelid",
+        "_ensembleid",
+        "_units",
+        "_mean",
+        "_stddev",
+        "_percentiles",
+    )
+
+    def __init__(self) -> None:
+        self._name = "A Longer Descriptive Name e.g. from SMDA"
+        self._shortname = "TheShortName"
+        self._datatype: str | None = None
+        self._md5sum: str | None = None
+        self._description = "Some description"
+        self._crs = None
+        self._datetime: datetime | str | None = None
+        self._deltadatetime = None
+        self._visuals = {"colortable": "rainbow", "lower": None, "upper": None}
+        self._domain = "depth"
+        self._units = "metric"
+        self._mean = None
+        self._stddev = None
+        self._percentiles = None
+        self._user = "anonymous"
+        self._field = "nofield"
+        self._ensembleid = None
+        self._modelid = None
+        self._source = "unknown"
+
+    @property
+    def name(self) -> str:
+        return self._name
+
+    @name.setter
+    def name(self, newname: str) -> None:
+        # TODO: validation
+        self._name = newname
+
+    @property
+    def datetime(self) -> datetime | str | None:
+        return self._datetime
+
+    @datetime.setter
+    def datetime(self, newdate: datetime | str) -> None:
+        # TODO: validation
+        self._datetime = newdate
+
+    @property
+    def shortname(self) -> str:
+        return self._shortname
+
+    @shortname.setter
+    def shortname(self, newname: str) -> None:
+        if not isinstance(newname, str):
+            raise ValueError("The shortname must be a string.")
+        if len(newname) >= 32:
+            raise ValueError("The shortname length must less or equal 32 letters.")
+
+        self._shortname = newname
+
+    @property
+    def description(self) -> str:
+        return self._description
+
+    @description.setter
+    def description(self, newstr: str) -> None:
+        if not isinstance(newstr, str):
+            raise ValueError("The description must be a string.")
+        if len(newstr) >= 64:
+            raise ValueError("The description length must less or equal 64 letters.")
+        invalids = r"/$<>[]:\&%"
+        if set(invalids).intersection(newstr):
+            raise ValueError("The description contains invalid characters such as /.")
+
+        self._description = newstr
+
+    @property
+    def md5sum(self) -> str | None:
+        """Set or get the md5 checksum of file content.
+
+        See generate_hash() method in e.g. RegularSurface.
+        """
+        return self._md5sum
+
+    @md5sum.setter
+    def md5sum(self, newhash: str) -> None:
+        # TODO: validation
+        self._md5sum = newhash
+
+    def get_meta(self) -> dict[str, Any]:
+        """Return metadata as an dict."""
+        meta = {}
+        for key in self.__slots__:
+            newkey = key[1:]
+            meta[newkey] = getattr(self, key)
+
+        return meta
+
+
+class MetaData:
+    """Generic metadata class, not intended to be used directly."""
+
+    def __init__(self) -> None:
+        """Generic metadata class __init__, not be used directly."""
+        self._required: dict[str, Any] = {}
+        self._optional = _OptionalMetaData()
+        self._freeform = {}
+
+        self._freeform = {"smda": "whatever"}
+
+    def get_metadata(self) -> dict[str, Any]:
+        """Get all metadata that are present."""
+        allmeta = {}
+        allmeta["_required_"] = self._required
+        allmeta["_optional_"] = self._optional.get_meta()
+        allmeta["_freeform_"] = self._freeform
+        return allmeta
+
+    @property
+    def optional(self) -> dict[str, Any]:
+        """Return or set optional metadata.
+
+        When setting optional names, it can be done in several ways...
+
+        surf.metadata.optional.name = "New name"
+        """
+        # return a copy of the instance; the reason for this is to avoid manipulation
+        # without validation
+        return self._optional.get_meta()
+
+    @optional.setter
+    def optional(self, indict: dict[str, Any]) -> None:
+        # setting the optional key, including validation
+        if not isinstance(indict, dict):
+            raise ValueError(f"Input must be a dictionary, not a {type(indict)}")
+
+        for key, value in indict.items():
+            setattr(self._optional, "_" + key, value)
+
+    @property
+    def opt(self) -> _OptionalMetaData:
+        """Return the metadata optional instance.
+
+        This makes access to the _OptionalMetaData instance.
+
+        Example::
+            >>> import xtgeo
+            >>> surf = xtgeo.surface_from_file(surface_dir + "/topreek_rota.gri")
+            >>> surf.metadata.opt.shortname = "TopValysar"
+
+        """
+        return self._optional
+
+    @property
+    def freeform(self) -> dict[str, Any]:
+        """Get or set the current freeform metadata dictionary."""
+        return self._freeform
+
+    @freeform.setter
+    def freeform(self, adict: dict[str, Any]) -> None:
+        """Freeform is a whatever you want set, without any validation."""
+        self._freeform = adict.copy()
+
+    def generate_fmu_name(self) -> str:
+        """Generate FMU name on form xxxx--yyyy--date but no suffix."""
+        fname = ""
+        first = "prefix"
+        fname += first
+        fname += "--"
+        fname += self._optional._shortname.lower()
+        if self._optional._datetime:
+            fname += "--"
+            fname += str(self._optional._datetime)
+        return fname
+
+
+class MetaDataRegularSurface(MetaData):
+    """Metadata for RegularSurface() objects."""
+
+    REQUIRED: dict[str, Any] = {
+        "ncol": 1,
+        "nrow": 1,
+        "xori": 0.0,
+        "yori": 0.0,
+        "xinc": 1.0,
+        "yinc": 1.0,
+        "yflip": 1,
+        "rotation": 0.0,
+        "undef": UNDEF,
+    }
+
+    def __init__(self) -> None:
+        """Docstring."""
+        super().__init__()
+        self._required = self.REQUIRED
+        self._optional._datatype = "Regular Surface"
+
+    @property
+    def required(self) -> dict[str, Any]:
+        """Get of set required metadata."""
+        return self._required
+
+    @required.setter
+    def required(self, obj: RegularSurface) -> None:
+        if not isinstance(obj, xtgeo.RegularSurface):  # type: ignore[attr-defined]
+            raise ValueError("Input object is not a RegularSurface()")
+
+        self._required["ncol"] = obj.ncol
+        self._required["nrow"] = obj.nrow
+        self._required["xori"] = obj.xori
+        self._required["yori"] = obj.yori
+        self._required["xinc"] = obj.xinc
+        self._required["yinc"] = obj.yinc
+        self._required["yflip"] = obj.yflip
+        self._required["rotation"] = obj.rotation
+        self._required["undef"] = obj.undef
+
+
+class MetaDataRegularCube(MetaData):
+    """Metadata for Cube() objects."""
+
+    # allowed optional keys; these are set to avoid discussions
+    REQUIRED: dict[str, Any] = {
+        "ncol": 1,
+        "nrow": 1,
+        "nlay": 1,
+        "xori": 0.0,
+        "yori": 0.0,
+        "zori": 0.0,
+        "xinc": 1.0,
+        "yinc": 1.0,
+        "zinc": 1.0,
+        "yflip": 1,
+        "zflip": 1,
+        "rotation": 0.0,
+        "undef": UNDEF,
+    }
+
+    def __init__(self) -> None:
+        """Docstring."""
+        super().__init__()
+        self._required = self.REQUIRED
+        self._optional._datatype = "Regular Cube"
+
+    @property
+    def required(self) -> dict[str, Any]:
+        """Get of set required metadata."""
+        return self._required
+
+    @required.setter
+    def required(self, obj: Cube) -> None:
+        if not isinstance(obj, xtgeo.Cube):  # type: ignore[attr-defined]
+            raise ValueError("Input object is not a regular Cube()")
+
+        self._required["ncol"] = obj.ncol
+        self._required["nrow"] = obj.nrow
+        self._required["nlay"] = obj.nlay
+        self._required["xori"] = obj.xori
+        self._required["yori"] = obj.yori
+        self._required["zori"] = obj.zori
+        self._required["xinc"] = obj.xinc
+        self._required["yinc"] = obj.yinc
+        self._required["zinc"] = obj.zinc
+        self._required["yflip"] = obj.yflip
+        self._required["zflip"] = 1
+        self._required["rotation"] = obj.rotation
+        self._required["undef"] = obj.undef
+
+
+class MetaDataCPGeometry(MetaData):
+    """Metadata for Grid() objects of type simplified CornerPoint Geometry."""
+
+    REQUIRED: dict[str, Any] = {
+        "ncol": 1,
+        "nrow": 1,
+        "nlay": 1,
+        "xshift": 0.0,
+        "yshift": 0.0,
+        "zshift": 0.0,
+        "xscale": 1.0,
+        "yscale": 1.0,
+        "zscale": 1.0,
+    }
+
+    def __init__(self) -> None:
+        """Docstring."""
+        super().__init__()
+        self._required = self.REQUIRED
+        self._optional._datatype = "CornerPoint GridGeometry"
+
+    @property
+    def required(self) -> dict[str, Any]:
+        """Get of set required metadata."""
+        return self._required
+
+    @required.setter
+    def required(self, obj: Grid) -> None:
+        if not isinstance(obj, xtgeo.Grid):  # type: ignore[attr-defined]
+            raise ValueError("Input object is not a Grid()")
+
+        self._required["ncol"] = obj.ncol
+        self._required["nrow"] = obj.nrow
+        self._required["nlay"] = obj.nlay
+        self._required["xshift"] = 0.0  # hardcoded so far
+        self._required["yshift"] = 0.0
+        self._required["zshift"] = 0.0
+        self._required["xscale"] = 1.0
+        self._required["yscale"] = 1.0
+        self._required["zscale"] = 1.0
+        self._required["subgrids"] = obj.get_subgrids()
+
+
+class MetaDataCPProperty(MetaData):
+    """Metadata for GridProperty() objects belonging to CPGeometry."""
+
+    REQUIRED: dict[str, Any] = {
+        "ncol": 1,
+        "nrow": 1,
+        "nlay": 1,
+        "codes": None,
+        "discrete": False,
+    }
+
+    def __init__(self) -> None:
+        """Docstring."""
+        super().__init__()
+        self._required = self.REQUIRED
+        self._optional._datatype = "CornerPoint GridProperty"
+
+    @property
+    def required(self) -> dict[str, Any]:
+        """Get of set required metadata."""
+        return self._required
+
+    @required.setter
+    def required(self, obj: GridProperty) -> None:
+        if not isinstance(obj, xtgeo.GridProperty):  # type: ignore[attr-defined]
+            raise ValueError("Input object is not a GridProperty()")
+
+        self._required["ncol"] = obj.ncol
+        self._required["nrow"] = obj.nrow
+        self._required["nlay"] = obj.nlay
+        self._required["codes"] = obj.codes
+        self._required["discrete"] = obj.isdiscrete
+
+
+class MetaDataWell(MetaData):
+    """Metadata for single Well() objects."""
+
+    REQUIRED: dict[str, Any] = {
+        "rkb": 0.0,
+        "xpos": 0.0,
+        "ypos": 0.0,
+        "name": "noname",
+        "wlogs": {},
+        "mdlogname": None,
+        "zonelogname": None,
+    }
+
+    def __init__(self) -> None:
+        """Initialisation for Well metadata."""
+        super().__init__()
+        self._required = self.REQUIRED
+        self._optional._datatype = "Well"
+
+    @property
+    def required(self) -> dict[str, Any]:
+        """Get of set required metadata."""
+        return self._required
+
+    @required.setter
+    def required(self, obj: Well) -> None:
+        if not isinstance(obj, xtgeo.Well):  # type: ignore[attr-defined]
+            raise ValueError("Input object is not a Well() instance!")
+
+        self._required["rkb"] = obj.rkb
+        self._required["xpos"] = obj.xpos
+        self._required["ypos"] = obj.ypos
+        self._required["name"] = obj.wname
+        self._required["wlogs"] = obj.get_wlogs()
+        self._required["mdlogname"] = obj.mdlogname
+        self._required["zonelogname"] = obj.zonelogname

xtgeo/roxutils/__init__.py

@@ -0,0 +1,7 @@
+"""XTGeo roxutils package"""
+
+from .roxutils import RoxUtils
+
+__all__ = [
+    "RoxUtils",
+]

xtgeo/roxutils/_roxar_loader.py

@@ -0,0 +1,54 @@
+"""Loading rmsapi or roxar module based on availability"""
+
+import importlib
+from typing import TYPE_CHECKING, Any, Optional, TypeVar
+
+# Roxar*Type are placeholders for the actual types which are not known at this point,
+# and these may be replaced in modules by e.g:
+# ---------
+#     from xtgeo.roxutils._roxar_loader import roxar
+#     if TYPE_CHECKING:
+#         from xtgeo.grid3d.grid_property import GridProperty
+#         if roxar is not None:
+#            from roxar.grids import Grid3D as RoxarGridType
+# ---------
+
+
+def load_module(module_name: str) -> Optional[Any]:
+    try:
+        return importlib.import_module(module_name)
+    except ImportError:
+        return None
+
+
+rmsapi = load_module("rmsapi")
+roxar = rmsapi if rmsapi else load_module("roxar")
+
+if rmsapi:
+    roxar_well_picks = load_module("rmsapi.well_picks")
+    roxar_jobs = load_module("rmsapi.jobs")
+    roxar_grids = load_module("rmsapi.grids")
+else:
+    roxar_well_picks = load_module("roxar.well_picks")
+    roxar_jobs = load_module("roxar.jobs")
+    roxar_grids = load_module("roxar.grids")
+
+# Use TypeVar correctly
+RoxarType = TypeVar("RoxarType")
+RoxarGridType = TypeVar("RoxarGridType")
+RoxarGrid3DType = TypeVar("RoxarGrid3DType")
+RoxarWellpicksType = TypeVar("RoxarWellpicksType")
+RoxarJobsType = TypeVar("RoxarJobsType")
+
+if TYPE_CHECKING:
+    if roxar is not None:
+        import roxar.grids as RoxarGridType  # noqa  # type: ignore
+        from roxar.grids import Grid3D as RoxarGrid3DType  # noqa  # type: ignore
+        from roxar.jobs import Jobs as RoxarJobsType  # noqa  # type: ignore
+        from roxar.well_picks import WellPicks as RoxarWellpicksType  # noqa  # type: ignore
+
+# Explicitly type the roxar* as Optional to indicate it may be None
+roxar: Optional[Any] = roxar
+roxar_grids: Optional[Any] = roxar_grids
+roxar_well_picks: Optional[Any] = roxar_well_picks
+roxar_jobs: Optional[Any] = roxar_jobs

xtgeo/roxutils/_roxutils_etc.py

@@ -0,0 +1,122 @@
+"""Private module for etc functions"""
+
+from xtgeo.common.log import null_logger
+
+from ._roxar_loader import roxar
+
+logger = null_logger(__name__)
+
+
+def create_whatever_category(
+    self, category, stype="horizons", domain="depth", htype="surface"
+):
+    """Create one or more a Horizons/Zones... category entries.
+
+    Args:
+        category (str or list): Name(s) of category to make, either as
+             a simple string or a list of strings.
+        stype (str): 'Super type' in RMS (horizons or zones).
+            Default is horizons
+        domain (str): 'depth' (default) or 'time'
+        htype (str): Horizon type: surface/lines/points
+    """
+
+    project = self.project
+    categories = []
+
+    if isinstance(category, str):
+        categories.append(category)
+    else:
+        categories.extend(category)
+
+    for catg in categories:
+        geom = roxar.GeometryType.surface
+        if htype.lower() == "lines":
+            geom = roxar.GeometryType.lines
+        elif htype.lower() == "points":
+            geom = roxar.GeometryType.points
+
+        dom = roxar.VerticalDomain.depth
+        if domain.lower() == "time":
+            dom = roxar.GeometryType.lines
+
+        if stype.lower() == "horizons":
+            if catg not in project.horizons.representations:
+                try:
+                    project.horizons.representations.create(catg, geom, dom)
+                except Exception as exmsg:
+                    print(f"Error: {exmsg}")
+            else:
+                print(f"Category <{catg}> already exists")
+
+        elif stype.lower() == "zones":
+            if catg not in project.zones.representations:
+                try:
+                    project.zones.representations.create(catg, geom, dom)
+                except Exception as exmsg:
+                    print(f"Error: {exmsg}")
+            else:
+                print(f"Category <{catg}> already exists")
+
+
+def delete_whatever_category(self, category, stype="horizons"):
+    """Delete one or more horizons or zones categories.
+
+    Args:
+        category (str or list): Name(s) of category to make, either
+            as a simple string or a list of strings.
+        stype (str): 'Super type', in RMS ('horizons' or 'zones').
+            Default is 'horizons'
+    """
+
+    project = self.project
+    categories = []
+
+    if isinstance(category, str):
+        categories.append(category)
+    else:
+        categories.extend(category)
+
+    for catg in categories:
+        stype_lower = stype.lower()
+        if stype_lower == "horizons" or stype_lower == "zones":
+            try:
+                del project.horizons.representations[catg]
+            except KeyError as kerr:
+                if kerr == catg:
+                    print(f"Cannot delete {kerr}, does not exist")
+        else:
+            raise ValueError("Wrong stype applied")
+
+
+def clear_whatever_category(self, category, stype="horizons"):
+    """Clear (or make empty) the content of one or more horizon/zones... categories.
+
+    Args:
+        category (str or list): Name(s) of category to empty, either as
+             a simple string or a list of strings.
+        stype (str): 'Super type' in RMS (horizons or zones).
+            Default is horizons
+
+    .. versionadded:: 2.1
+    """
+
+    project = self.project
+
+    categories = []
+    if isinstance(category, str):
+        categories.append(category)
+    else:
+        categories.extend(category)
+
+    xtype = project.horizons
+    if stype.lower() == "zones":
+        xtype = project.zones
+
+    for catg in categories:
+        for xitem in xtype:
+            try:
+                item = xtype[xitem.name][catg]
+                item.set_empty()
+            except KeyError as kmsg:
+                print(kmsg)