xtgeo 4.13.1__cp310-cp310-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl

xtgeo/common/xtgeo_dialog.py

@@ -0,0 +1,604 @@
+"""
+Module for basic XTGeo dialog, basic interaction with user,
+including logging for debugging.
+
+Logging is enabled by setting a environment variable::
+
+  export XTG_LOGGING_LEVEL=INFO   # if bash; will set logging to INFO level
+  setenv XTG_LOGGING_LEVEL INFO   # if tcsh; will set logging to INFO level
+
+Other levels are DEBUG and CRITICAL. CRITICAL is default (cf. Pythons logging)
+
+Usage of logging in scripts::
+
+  import xtgeo
+  xtg = xtgeo.common.XTGeoDialog()
+  logger = xtg.basiclogger(__name__)
+  logger.info('This is logging of %s', something)
+
+Other than logging, there is also a template for user interaction, which shall
+be used in client scripts::
+
+  xtg.echo('This is a message')
+  xtg.warn('This is a warning')
+  xtg.error('This is an error, will continue')
+  xtg.critical('This is a big error, will exit')
+
+In addition there are other classes:
+
+* XTGShowProgress()
+
+* XTGDescription()
+
+"""
+
+from __future__ import annotations
+
+import getpass
+import inspect
+import logging
+import os
+import platform
+import re
+import sys
+import timeit
+import warnings
+from datetime import datetime as dtime
+from typing import Any, Literal
+
+from .log import null_logger
+from .version import __version__
+
+DEBUG = 0
+MLS = 10000000.0
+
+
+HEADER = "\033[1;96m"
+OKBLUE = "\033[94m"
+OKGREEN = "\033[92m"
+WARN = "\033[93;43m"
+ERROR = "\033[93;41m"
+CRITICAL = "\033[1;91m"
+ENDC = "\033[0m"
+BOLD = "\033[1m"
+UNDERLINE = "\033[4m"
+
+
+def _printdebug(*args: Any) -> None:
+    """local unction to print debugging while initializing logging"""
+
+    if DEBUG:
+        print("XTG DEBUG:", *args)
+
+
+class XTGShowProgress:
+    """Class for showing progress of a computation to the terminal.
+
+    Example::
+
+        # assuming 30 steps in calculation
+        theprogress = XTGShowProgress(30, info='Compute stuff')
+        for i in range(30):
+            do_slow_computation()
+            theprogress.flush(i)
+        theprogress.finished()
+    """
+
+    def __init__(
+        self,
+        maxiter: int,
+        info: str = "",
+        leadtext: str = "",
+        skip: int = 1,
+        show: bool = True,
+    ):
+        self._max = maxiter
+        self._info = info
+        self._show = show
+        self._leadtext = leadtext
+        self._skip = skip
+        self._next = 0
+
+    def flush(self, step: int) -> None:
+        if not self._show:
+            return
+        progress = int(float(step) / float(self._max) * 100.0)
+        if progress >= self._next:
+            print(f"{self._leadtext}{progress}% {self._info}")
+            self._next += self._skip
+
+    def finished(self) -> None:
+        if not self._show:
+            return
+        print(f"{self._leadtext}{100}% {self._info}")
+
+
+class XTGDescription:
+    """Class for making desciptions of object instances"""
+
+    def __init__(self) -> None:
+        self._txt: list[str] = []
+
+    def title(self, atitle: str) -> None:
+        fmt = "=" * 99
+        self._txt.append(fmt)
+        fmt = f"{atitle}"
+        self._txt.append(fmt)
+        fmt = "=" * 99
+        self._txt.append(fmt)
+
+    def txt(self, *atxt: Any) -> None:
+        fmt = self._smartfmt(list(atxt))
+        self._txt.append(fmt)
+
+    def flush(self) -> None:
+        fmt = "=" * 99
+        self._txt.append(fmt)
+
+        for line in self._txt:
+            print(line)
+
+    def astext(self) -> str:
+        thetext = ""
+        fmt = "=" * 99
+        self._txt.append(fmt)
+
+        for line in self._txt:
+            thetext += line + "\n"
+
+        return thetext[:-1]  # skip last \n
+
+    @staticmethod
+    def _smartfmt(atxt: list[str]) -> str:
+        # f-string does not work with starred
+        alen = len(atxt)
+        atxt.insert(1, "=>")
+        if alen == 1:
+            fmt = "{:40s}".format(*atxt)
+        elif alen == 2:
+            fmt = "{:40s} {:>2s} {}".format(*atxt)
+        elif alen == 3:
+            fmt = "{:40s} {:>2s} {}  {}".format(*atxt)
+        elif alen == 4:
+            fmt = "{:40s} {:>2s} {}  {}  {}".format(*atxt)
+        elif alen == 5:
+            fmt = "{:40s} {:>2s} {}  {}  {}  {}".format(*atxt)
+        elif alen == 6:
+            fmt = "{:40s} {:>2s} {}  {}  {}  {}  {}".format(*atxt)
+        elif alen == 7:
+            fmt = "{:40s} {:>2s} {}  {}  {}  {}  {}  {}".format(*atxt)
+        else:
+            fmt = "{:40s} {:>2s} {}  {}  {}  {}  {}  {}  {}".format(*atxt)
+        return fmt
+
+
+class _TimeFilter(logging.Filter):
+    """handling difftimes in logging..."""
+
+    # cf https://stackoverflow.com/questions/31521859/
+    # \python-logging-module-time-since-last-log
+
+    def filter(self, record: logging.LogRecord) -> bool:
+        try:
+            last: float = self.last  # type: ignore
+        except AttributeError:
+            last = record.relativeCreated
+
+        dlt = dtime.fromtimestamp(
+            record.relativeCreated / 1000.0
+        ) - dtime.fromtimestamp(last / 1000.0)
+
+        record.relative = f"{dlt.seconds + dlt.microseconds / MLS:7.3f}"
+
+        self.last = record.relativeCreated
+        return True
+
+
+class _Formatter(logging.Formatter):
+    """Override record.pathname to truncate strings"""
+
+    # https://stackoverflow.com/questions/14429724/
+    # python-logging-how-do-i-truncate-the-pathname-to-just-the-last-few-characters
+    def format(self, record: logging.LogRecord) -> str:
+        filename = "unset_filename"
+
+        if "pathname" in record.__dict__:
+            # truncate the pathname
+            filename = record.pathname
+            if len(filename) > 40:
+                filename = re.sub(r".*src/", "", filename)
+            record.pathname = filename
+
+        return super().format(record)
+
+
+class XTGeoDialog:
+    """System for handling dialogs and messages in XTGeo.
+
+    This module cooperates with Python logging module.
+    """
+
+    def __init__(self) -> None:
+        """Initializing XTGeoDialog."""
+        self._callclass = None
+        self._caller = None
+        self._rootlogger = logging.getLogger()
+        self._lformat = None
+        self._lformatlevel = 1
+        self._logginglevel = "CRITICAL"
+        self._logginglevel_fromenv = None
+        self._loggingname = ""
+        self._showrtwarnings = True
+
+        # a string, for Python logging:
+        self._logginglevel_fromenv = os.environ.get("XTG_LOGGING_LEVEL", None)
+
+        # a number, for format, 1 is simple, 2 is more info etc
+        loggingformat = os.environ.get("XTG_LOGGING_FORMAT")
+
+        _printdebug("Logging format is", loggingformat)
+
+        if self._logginglevel_fromenv:
+            self.logginglevel = self._logginglevel_fromenv
+
+        if loggingformat is not None:
+            self._lformatlevel = int(loggingformat)
+
+    @property
+    def logginglevel(self) -> str:
+        """Set or return a logging level property, e.g. logging.CRITICAL"""
+
+        return self._logginglevel
+
+    @logginglevel.setter
+    def logginglevel(self, level: str) -> None:
+        validlevels = ("INFO", "WARNING", "DEBUG", "CRITICAL")
+        if level in validlevels:
+            self._logginglevel = level
+        else:
+            raise ValueError(
+                f"Invalid level given, must be one of: {', '.join(validlevels)}"
+            )
+
+    @property
+    def numericallogginglevel(self) -> int:
+        """Return a numerical logging level (read only)"""
+        llo = logging.CRITICAL
+        if self._logginglevel == "INFO":
+            llo = logging.INFO
+        elif self._logginglevel == "WARNING":
+            llo = logging.WARNING
+        elif self._logginglevel == "DEBUG":
+            llo = logging.DEBUG
+
+        return llo
+
+    @property
+    def loggingformatlevel(self) -> int:
+        return self._lformatlevel
+
+    @property
+    def loggingformat(self) -> str | None:
+        """Returns the format string to be used in logging"""
+
+        _printdebug("Logging format is", self._lformatlevel)
+
+        if self._lformatlevel <= 1:
+            fmt = logging.Formatter(fmt="%(levelname)8s: (%(relative)ss) \t%(message)s")
+
+        elif self._lformatlevel == 2:
+            fmt = _Formatter(
+                fmt="%(levelname)8s (%(relative)ss) %(pathname)44s "
+                "[%(funcName)40s()] %(lineno)4d >> \t%(message)s"
+            )
+
+        else:
+            fmt = logging.Formatter(
+                fmt="%(asctime)s Line: %(lineno)4d %(name)44s "
+                "(Delta=%(relative)ss) "
+                "[%(funcName)40s()]"
+                "%(levelname)8s:"
+                "\t%(message)s"
+            )
+
+        log = self._rootlogger
+        for h in log.handlers:
+            h.addFilter(_TimeFilter())
+            h.setFormatter(fmt)
+
+        self._lformat = fmt._fmt  # private attribute in Formatter()
+        return self._lformat
+
+    @staticmethod
+    def get_xtgeo_info(variant: Literal["clibinfo"] = "clibinfo") -> str:
+        """Prints a banner for a XTGeo app to STDOUT.
+
+        Args:
+            variant (str): Variant of info
+
+        Returns:
+            info (str): A string with XTGeo system info
+
+        """
+
+        if variant == "clibinfo":
+            return (
+                f"XTGeo version {__version__} (Python "
+                f"{platform.python_version()} on {platform.system()})"
+            )
+
+        return "Invalid"
+
+    @staticmethod
+    def print_xtgeo_header(
+        appname: str,
+        appversion: str | None,
+        info: str | None = None,
+    ) -> None:
+        """Prints a banner for a XTGeo app to STDOUT.
+
+        Args:
+            appname (str): Name of application.
+            appversion (str): Version of application on form '3.2.1'
+            info (str, optional): More info, e.g. if beta release
+
+        Example::
+
+            xtg.print_xtgeo_header('myapp', '0.2.1', info='Beta release!')
+        """
+
+        cur_version = "Python " + str(sys.version_info[0]) + "."
+        cur_version += str(sys.version_info[1]) + "." + str(sys.version_info[2])
+
+        app = appname + ", version " + str(appversion)
+        if info:
+            app = app + " (" + info + ")"
+        print("")
+        print(HEADER)
+        print("#" * 79)
+        print(f"#{app.center(77)}#")
+        print("#" * 79)
+        nowtime = dtime.now().strftime("%Y-%m-%d %H:%M:%S")
+        ver = f"Using XTGeo version {__version__}"
+        cur_version += f" @ {nowtime} on {platform.node()} by {getpass.getuser()}"
+        print(f"#{ver.center(77)}#")
+        print(f"#{cur_version.center(77)}#")
+        print("#" * 79)
+        print(ENDC)
+        print("")
+
+    def basiclogger(
+        self,
+        name: str,
+        logginglevel: str | None = None,
+        loggingformat: int | None = None,
+        info: bool = False,
+    ) -> logging.Logger:
+        """Initiate the logger by some default settings."""
+
+        if logginglevel is not None and self._logginglevel_fromenv is None:
+            self.logginglevel = logginglevel
+
+        if loggingformat is not None and isinstance(loggingformat, int):
+            self._lformatlevel = loggingformat
+
+        logging.basicConfig(stream=sys.stdout)
+        fmt = self.loggingformat
+        self._loggingname = name
+        if info:
+            print(
+                f"Logginglevel is {self.logginglevel}, formatlevel is "
+                f"{self._lformatlevel}, and format is {fmt}"
+            )
+        self._rootlogger.setLevel(self.numericallogginglevel)
+
+        logging.captureWarnings(True)
+
+        return logging.getLogger(self._loggingname)
+
+    @staticmethod
+    def functionlogger(name: str) -> logging.Logger:
+        """
+        Deprecated: Get the logger for functions (not top level).
+
+        This method is deprecated and will be removed in a future version.
+        Use the `null_logger` function instead for creating loggers with a NullHandler.
+
+        Args:
+            name (str): The name of the logger.
+
+        Returns:
+            logging.Logger: A logger object with a NullHandler.
+
+        Example:
+            # Deprecated usage
+            logger = XTGeoDialog.functionlogger(__name__)
+
+            # Recommended usage
+            logger = null_logger(__name__)
+        """
+
+        warnings.warn(
+            "functionlogger is deprecated and will be removed in a future version. "
+            "Use null_logger instead.",
+            DeprecationWarning,
+        )
+        return null_logger(name)
+
+    @staticmethod
+    def timer(*args: float) -> float:
+        """Without args; return the time, with a time as arg return the
+        difference.
+        """
+        time1 = timeit.default_timer()
+
+        if args:
+            return time1 - args[0]
+
+        return time1
+
+    def show_runtimewarnings(self, flag: bool = True) -> None:
+        """Show warnings issued by xtg.warn, if flag is True."""
+        self._showrtwarnings = flag
+
+    def insane(self, string: str) -> None:
+        level = 4
+        idx = 0
+
+        caller = sys._getframe(1).f_code.co_name
+        frame = inspect.stack()[1][0]
+        self.get_callerinfo(caller, frame)
+
+        self._output(idx, level, string)
+
+    def trace(self, string: str) -> None:
+        level = 3
+        idx = 0
+
+        caller = sys._getframe(1).f_code.co_name
+        frame = inspect.stack()[1][0]
+        self.get_callerinfo(caller, frame)
+
+        self._output(idx, level, string)
+
+    def debug(self, string: str) -> None:
+        level = 2
+        idx = 0
+
+        caller = sys._getframe(1).f_code.co_name
+        frame = inspect.stack()[1][0]
+        self.get_callerinfo(caller, frame)
+
+        self._output(idx, level, string)
+
+    def speak(self, string: str) -> None:
+        level = 1
+        idx = 1
+
+        caller = sys._getframe(1).f_code.co_name
+        frame = inspect.stack()[1][0]
+        self.get_callerinfo(caller, frame)
+
+        self._output(idx, level, string)
+
+    info = speak
+
+    def say(self, string: str) -> None:
+        level = -5
+        idx = 3
+
+        caller = sys._getframe(1).f_code.co_name
+        frame = inspect.stack()[1][0]
+        self.get_callerinfo(caller, frame)
+
+        self._output(idx, level, string)
+
+    def warn(self, string: str) -> None:
+        """Show warnings at Runtime (pure user info/warns)."""
+        level = 0
+        idx = 6
+
+        if self._showrtwarnings:
+            caller = sys._getframe(1).f_code.co_name
+            frame = inspect.stack()[1][0]
+            self.get_callerinfo(caller, frame)
+
+            self._output(idx, level, string)
+
+    warning = warn
+
+    @staticmethod
+    def warndeprecated(string: str) -> None:
+        """Show Deprecation warnings using Python warnings"""
+
+        warnings.simplefilter("default", DeprecationWarning)
+        warnings.warn(string, DeprecationWarning, stacklevel=2)
+
+    @staticmethod
+    def warnuser(string: str) -> None:
+        """Show User warnings, using Python warnings"""
+
+        warnings.simplefilter("default", UserWarning)
+        warnings.warn(string, UserWarning, stacklevel=2)
+
+    def error(self, string: str) -> None:
+        level = -8
+        idx = 8
+
+        caller = sys._getframe(1).f_code.co_name
+        frame = inspect.stack()[1][0]
+        self.get_callerinfo(caller, frame)
+
+        self._output(idx, level, string)
+
+    def critical(self, string: str) -> None:
+        level = -9
+        idx = 9
+
+        caller = sys._getframe(1).f_code.co_name
+        frame = inspect.stack()[1][0]
+        self.get_callerinfo(caller, frame)
+
+        self._output(idx, level, string)
+
+    def get_callerinfo(self, caller: Any, frame: Any) -> tuple[Any, str]:
+        the_class = self._get_class_from_frame(frame)
+
+        # just keep the last class element
+        x = str(the_class).split(".")
+        the_class = x[-1]
+
+        self._caller = caller
+        self._callclass = the_class
+
+        return (self._caller, self._callclass)
+
+    # =============================================================================
+    # Private routines
+    # =============================================================================
+
+    @staticmethod
+    def _get_class_from_frame(fr: Any) -> Any:
+        args, _, _, value_dict = inspect.getargvalues(fr)
+
+        # we check the first parameter for the frame function is
+        # named 'self'
+        if args and args[0] == "self":
+            instance = value_dict.get("self", None)
+            if instance:
+                # return its class
+                return getattr(instance, "__class__", None)
+        # return None otherwise
+        return None
+
+    def _output(self, idx: int, level: int, string: str) -> None:
+        prefix = ""
+        endfix = ""
+
+        if idx == 0:
+            prefix = "++"
+        elif idx == 1:
+            prefix = "**"
+        elif idx == 3:
+            prefix = ">>"
+        elif idx == 6:
+            prefix = WARN + "##"
+            endfix = ENDC
+        elif idx == 8:
+            prefix = ERROR + "!#"
+            endfix = ENDC
+        elif idx == 9:
+            prefix = CRITICAL + "!!"
+            endfix = ENDC
+
+        ulevel = str(level)
+        if level == -5:
+            ulevel = "M"
+        if level == -8:
+            ulevel = "E"
+        if level == -9:
+            ulevel = "W"
+        print(
+            f"{prefix} <{ulevel}> [{self._callclass:23s}-> "
+            f"{self._caller:>33s}] {string}{endfix}"
+        )

xtgeo/cube/__init__.py

@@ -0,0 +1,9 @@
+"""The XTGeo cube package."""
+
+from .cube1 import Cube, cube_from_file, cube_from_roxar
+
+__all__ = [
+    "Cube",
+    "cube_from_file",
+    "cube_from_roxar",
+]