xradio 1.0.2__py3-none-any.whl → 1.1.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (44) hide show
  1. xradio/_utils/_casacore/casacore_from_casatools.py +75 -9
  2. xradio/_utils/dict_helpers.py +38 -7
  3. xradio/_utils/list_and_array.py +26 -3
  4. xradio/_utils/schema.py +44 -0
  5. xradio/_utils/xarray_helpers.py +63 -0
  6. xradio/_utils/zarr/common.py +4 -2
  7. xradio/image/__init__.py +4 -2
  8. xradio/image/_util/_casacore/common.py +2 -1
  9. xradio/image/_util/_casacore/xds_from_casacore.py +144 -92
  10. xradio/image/_util/_casacore/xds_to_casacore.py +118 -53
  11. xradio/image/_util/_fits/xds_from_fits.py +125 -37
  12. xradio/image/_util/_zarr/common.py +0 -1
  13. xradio/image/_util/casacore.py +183 -25
  14. xradio/image/_util/common.py +10 -8
  15. xradio/image/_util/image_factory.py +469 -27
  16. xradio/image/image.py +72 -100
  17. xradio/image/image_xds.py +262 -0
  18. xradio/image/schema.py +85 -0
  19. xradio/measurement_set/__init__.py +5 -4
  20. xradio/measurement_set/_utils/_msv2/_tables/read.py +4 -3
  21. xradio/measurement_set/_utils/_msv2/conversion.py +6 -9
  22. xradio/measurement_set/_utils/_msv2/create_field_and_source_xds.py +1 -0
  23. xradio/measurement_set/_utils/_msv2/msv4_sub_xdss.py +1 -1
  24. xradio/measurement_set/_utils/_utils/interpolate.py +5 -0
  25. xradio/measurement_set/_utils/_utils/partition_attrs.py +0 -1
  26. xradio/measurement_set/convert_msv2_to_processing_set.py +9 -9
  27. xradio/measurement_set/load_processing_set.py +2 -2
  28. xradio/measurement_set/measurement_set_xdt.py +83 -93
  29. xradio/measurement_set/open_processing_set.py +1 -1
  30. xradio/measurement_set/processing_set_xdt.py +33 -26
  31. xradio/schema/check.py +70 -19
  32. xradio/schema/common.py +0 -1
  33. xradio/testing/__init__.py +0 -0
  34. xradio/testing/_utils/__template__.py +58 -0
  35. xradio/testing/measurement_set/__init__.py +58 -0
  36. xradio/testing/measurement_set/checker.py +131 -0
  37. xradio/testing/measurement_set/io.py +22 -0
  38. xradio/testing/measurement_set/msv2_io.py +1854 -0
  39. {xradio-1.0.2.dist-info → xradio-1.1.1.dist-info}/METADATA +65 -23
  40. xradio-1.1.1.dist-info/RECORD +75 -0
  41. {xradio-1.0.2.dist-info → xradio-1.1.1.dist-info}/WHEEL +1 -1
  42. xradio-1.0.2.dist-info/RECORD +0 -66
  43. {xradio-1.0.2.dist-info → xradio-1.1.1.dist-info}/licenses/LICENSE.txt +0 -0
  44. {xradio-1.0.2.dist-info → xradio-1.1.1.dist-info}/top_level.txt +0 -0
{xradio-1.0.2.dist-info → xradio-1.1.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: xradio
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- Version: 1.0.2
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+ Version: 1.1.1
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  Summary: Xarray Radio Astronomy Data IO
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  Author-email: Jan-Willem Steeb <jsteeb@nrao.edu>, Federico Montesino Pouzols <pouzols@eso.edu>, Dave Mehringer <dmehring@nrao.edu>, Peter Wortmann <peter.wortmann@skao.int>
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  License: BSD 3-Clause License
@@ -40,24 +40,48 @@ License: BSD 3-Clause License
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  Requires-Python: <3.14,>=3.11
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  Description-Content-Type: text/markdown
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  License-File: LICENSE.txt
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- Requires-Dist: astropy
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- Requires-Dist: toolviper>=0.0.12
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- Requires-Dist: numba>=0.57.0
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- Requires-Dist: s3fs
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- Requires-Dist: scipy
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  Requires-Dist: xarray
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- Requires-Dist: zarr<3,>=2
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- Requires-Dist: pyarrow
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- Requires-Dist: typeguard
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- Requires-Dist: numcodecs<0.16
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- Requires-Dist: psutil
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+ Provides-Extra: zarr
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+ Requires-Dist: astropy; extra == "zarr"
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+ Requires-Dist: toolviper>=0.0.12; extra == "zarr"
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+ Requires-Dist: s3fs; extra == "zarr"
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+ Requires-Dist: scipy; extra == "zarr"
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+ Requires-Dist: xarray; extra == "zarr"
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+ Requires-Dist: zarr<3,>=2; extra == "zarr"
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+ Requires-Dist: pyarrow; extra == "zarr"
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+ Requires-Dist: psutil; extra == "zarr"
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  Provides-Extra: test
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+ Requires-Dist: astropy; extra == "test"
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+ Requires-Dist: toolviper>=0.0.12; extra == "test"
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+ Requires-Dist: s3fs; extra == "test"
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+ Requires-Dist: scipy; extra == "test"
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+ Requires-Dist: xarray; extra == "test"
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+ Requires-Dist: zarr<3,>=2; extra == "test"
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+ Requires-Dist: pyarrow; extra == "test"
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+ Requires-Dist: psutil; extra == "test"
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  Requires-Dist: pytest; extra == "test"
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  Requires-Dist: pytest-cov; extra == "test"
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  Requires-Dist: pytest-html; extra == "test"
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- Provides-Extra: python-casacore
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- Requires-Dist: python_casacore>=3.6.1; sys_platform != "darwin" and extra == "python-casacore"
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+ Requires-Dist: python_casacore>=3.6.1; sys_platform != "darwin" and extra == "test"
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+ Provides-Extra: casacore
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+ Requires-Dist: astropy; extra == "casacore"
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+ Requires-Dist: toolviper>=0.0.12; extra == "casacore"
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+ Requires-Dist: s3fs; extra == "casacore"
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+ Requires-Dist: scipy; extra == "casacore"
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+ Requires-Dist: xarray; extra == "casacore"
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+ Requires-Dist: zarr<3,>=2; extra == "casacore"
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+ Requires-Dist: pyarrow; extra == "casacore"
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+ Requires-Dist: psutil; extra == "casacore"
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+ Requires-Dist: python_casacore>=3.6.1; sys_platform != "darwin" and extra == "casacore"
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  Provides-Extra: interactive
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+ Requires-Dist: astropy; extra == "interactive"
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+ Requires-Dist: toolviper>=0.0.12; extra == "interactive"
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+ Requires-Dist: s3fs; extra == "interactive"
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+ Requires-Dist: scipy; extra == "interactive"
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+ Requires-Dist: xarray; extra == "interactive"
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+ Requires-Dist: zarr<3,>=2; extra == "interactive"
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+ Requires-Dist: pyarrow; extra == "interactive"
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+ Requires-Dist: psutil; extra == "interactive"
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  Requires-Dist: matplotlib; extra == "interactive"
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  Requires-Dist: prettytable; extra == "interactive"
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  Requires-Dist: jupyterlab; extra == "interactive"
@@ -74,7 +98,16 @@ Requires-Dist: sphinx-autosummary-accessors; extra == "docs"
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  Requires-Dist: sphinx_rtd_theme; extra == "docs"
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  Requires-Dist: twine; extra == "docs"
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  Requires-Dist: pandoc; extra == "docs"
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+ Requires-Dist: toolviper; extra == "docs"
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  Provides-Extra: all
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+ Requires-Dist: astropy; extra == "all"
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+ Requires-Dist: toolviper>=0.0.12; extra == "all"
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+ Requires-Dist: s3fs; extra == "all"
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+ Requires-Dist: scipy; extra == "all"
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+ Requires-Dist: xarray; extra == "all"
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+ Requires-Dist: zarr<3,>=2; extra == "all"
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+ Requires-Dist: pyarrow; extra == "all"
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+ Requires-Dist: psutil; extra == "all"
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  Requires-Dist: pytest; extra == "all"
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  Requires-Dist: pytest-cov; extra == "all"
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  Requires-Dist: pytest-html; extra == "all"
@@ -119,28 +152,33 @@ XRADIO can now be installed using:
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  ```sh
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  pip install xradio
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  ```
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- This will also install the minimal dependencies for XRADIO.
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+ This installs only the minimal dependencies for XRADIO, which allow you to use the schema checker and export schemas to JSON. **Note that if only the minimal dependencies are installed, the functionality to open data stored using zarr and to convert MSv2 to MSv4 will not be available.**
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- Note that if only the minimal dependencies are installed, the functionality to convert MSv2 to MSv4 will not be available.
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- This requires installing `python-casacore` (also included in the `all` group, see below), or alternatively the
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- `casatools` backend, as explained in the [casatools I/O backend guide](docs/source/measurement_set/guides/backends.md).
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+ To install the zarr backend use:
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+ ```sh
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+ pip install "xradio[zarr]"
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+ ```
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+ This allows for opening data stored using zarr.
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- To install the minimal dependencies and the interactive components (JupyterLab) use:
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+ To install the zarr backend and the interactive components (JupyterLab) use:
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  ```sh
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  pip install "xradio[interactive]"
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  ```
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- To enable conversion from MSv2 to MSv4 use (this only works for Linux):
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+ To install the casacore backend along with the zarr backend which enables conversion from MSv2 to MSv4 use (this only works for Linux):
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  ```sh
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- pip install "xradio[python-casacore]"
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+ pip install "xradio[casacore]"
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  ```
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- To be able to run tests:
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+
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+ To installs all the needed packages to run the unit tests:
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  ```sh
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  pip install "xradio[test]"
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  ```
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+ This also installs the zarr backend and the casacore backend on Linux. Note the tests will fail on MacOS if python-casacore is not installed separately using conda.
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+
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  Multiple-dependencies can be installed using:
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  ```sh
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- pip install "xradio[interactive,python-casacore,test]"
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+ pip install "xradio[interactive,casacore,test]"
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  ```
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  To install a more complete set of dependencies:
@@ -148,4 +186,8 @@ To install a more complete set of dependencies:
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  pip install "xradio[all]"
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  ```
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  This will include the dependencies required to run the interactive Jupyter notebooks, run tests, build documentation,
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- and python-casacore to enable MSv2=>MSv4 functionality.
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+ and python-casacore to enable MSv2=>MSv4 functionality on Linux.
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+
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+ Instruction of how to setup a developer environment can be found at [Development](https://xradio.readthedocs.io/en/latest/development.html).
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+
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+ Instruction of how to setup a developer environment using casatools instead of python-casacore can be found at [casatools I/O backend guide](docs/source/measurement_set/guides/backends.md).
xradio-1.1.1.dist-info/RECORD ADDED
@@ -0,0 +1,75 @@
1
+ xradio/__init__.py,sha256=YTpM274ZBWK14HmIXyah27yiKPsmR6xCILvlXkQrYG4,387
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+ xradio/_utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ xradio/_utils/coord_math.py,sha256=ZdbgStXqQ_HS7qQ9UBPk8Z3Zse5P_DrYQsgn2UCf22U,3342
4
+ xradio/_utils/dict_helpers.py,sha256=SH8Fu-nHGLa00ii5Q6wghBZcmF5sWmEI3887FRbl8lk,4895
5
+ xradio/_utils/list_and_array.py,sha256=jnTGydSciWnAqyCzsuxsAiKot5-fiQ_0JeJ9-ExwRMM,5099
6
+ xradio/_utils/schema.py,sha256=n24XSPZAhyYTu3QciD5XOTeGoebmxc8iM5WRCI2y_ZE,8876
7
+ xradio/_utils/xarray_helpers.py,sha256=LQyh754BRFvKz8xP0CF_nWBj0s2HI5KVUz7c1YxC3Bc,1998
8
+ xradio/_utils/_casacore/casacore_from_casatools.py,sha256=FDlerWYCFvU5OKFoJ5PJBbhv78jxc3iWGGfYVP00YK8,33008
9
+ xradio/_utils/_casacore/tables.py,sha256=puRidbjtVx6caEG_Z5TebTLdTUbtBUhzvqByKLQTHfo,1389
10
+ xradio/_utils/zarr/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ xradio/_utils/zarr/common.py,sha256=MTew96RhSS2f77-hIsP4aXS2tZwF1THvjpkRQQqpmgk,2989
12
+ xradio/image/__init__.py,sha256=s18tPMOv0VLW7zrq9cQ_gOb577YXfqfK8ZMhA63LGH0,468
13
+ xradio/image/image.py,sha256=SuEc0G4MRIOAv--qSPo2jMfJhJlHGA-nr3LdSA_Sykk,15366
14
+ xradio/image/image_xds.py,sha256=-RS3wM6uSspZSu50jaPgopUYQQbU8KgQSBUt6sh7XuE,9169
15
+ xradio/image/schema.py,sha256=S3FkclHMLucgw3ciTpqdc9x1P--ZxwhJZis5lyW7XcM,6043
16
+ xradio/image/_util/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ xradio/image/_util/casacore.py,sha256=xkEiWpLDWClxCNjmXm6oXFgZkTBgAMmeqBBjyr325h8,11327
18
+ xradio/image/_util/common.py,sha256=6IB3LgAJvla_m6DowTeRZVsGlOpidoz-rlnRO6ueMQg,8572
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+ xradio/image/_util/image_factory.py,sha256=NgXuE73H3An2ar9ebN_S-lQ5MXnX07D2sFhAOvIDVVk,25043
20
+ xradio/image/_util/zarr.py,sha256=lhQqVRC1GEWClG3zRbuDr2IlQBfXeDqaLUJIN-MVMxA,1652
21
+ xradio/image/_util/_casacore/__init__.py,sha256=OlsiRE40o1jSbBI4khgQQzgfDYbAlOMKIhO4UFlbGhg,41
22
+ xradio/image/_util/_casacore/common.py,sha256=PHt7SNllwYW70w9pEhLrcCZ7avoZNmwKxTSnhSQQtOU,1793
23
+ xradio/image/_util/_casacore/xds_from_casacore.py,sha256=UuNMbZO20H3O7VfeqtZpnfvgZIQzK4uuKf8yG6bYaSQ,46028
24
+ xradio/image/_util/_casacore/xds_to_casacore.py,sha256=9Lh8HOiQwpRujE47h3BnFzqlGYaA1FpXafsDldsui84,20339
25
+ xradio/image/_util/_fits/xds_from_fits.py,sha256=d6cW2A4FRlus5YyXQg9bdFbBoirnxvDD7BurnEoe2Kk,38233
26
+ xradio/image/_util/_zarr/common.py,sha256=U_nMtFYN_qFDP0h8JiLEEBG3ufF5ckVo8XQMC16xti8,307
27
+ xradio/image/_util/_zarr/xds_from_zarr.py,sha256=KMsfaSSm9kyVoztS6pUzGNxMZzQnCxkk0kDv2GxW5Kw,4451
28
+ xradio/image/_util/_zarr/xds_to_zarr.py,sha256=nsDvDD-kuMuMF2dDlj0jTxSW4mdR-jjIsvXHi5uIERU,2373
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+ xradio/image/_util/_zarr/zarr_low_level.py,sha256=xnYm6EmVbmLxMlOSXH32SABfQBLHfr2H9ch9gYwFNXs,13338
30
+ xradio/measurement_set/__init__.py,sha256=8cfQCJnYBmyNfyfWoVlowqqERWhWM7ncdHAillLO68U,1123
31
+ xradio/measurement_set/convert_msv2_to_processing_set.py,sha256=uA3SCdxVq2lEbLqzoMt-ncBqEpAPL5NjMEy-6VPTlCM,10722
32
+ xradio/measurement_set/load_processing_set.py,sha256=4cGxHH292S0eu4lQFFIHdqgVKXj9mi-YVDqt_BcqQN0,8209
33
+ xradio/measurement_set/measurement_set_xdt.py,sha256=ZYOHu--GeGjuv9oMxDW9ife0x93dFQrJEWzI993BL7U,12172
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+ xradio/measurement_set/open_processing_set.py,sha256=_xjDGxiA5WvWqCHoUebYbrKDP4gFyjHcgpgci_VpvU4,5420
35
+ xradio/measurement_set/processing_set_xdt.py,sha256=QrewnWV_q9t4JnFH5lT8sN7w_06G6U7rPnraVx9XPr8,37148
36
+ xradio/measurement_set/schema.py,sha256=ZH0n8lZTD8fi3JEZV2SEwdh1oRo1ric__uZ9o8p3AUE,89149
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+ xradio/measurement_set/_utils/__init__.py,sha256=iTbgPiQPw9hyXSdQYPcwGRrP2PFXgF6CZi8A3KNKya0,43
38
+ xradio/measurement_set/_utils/_msv2/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
39
+ xradio/measurement_set/_utils/_msv2/conversion.py,sha256=2ASFGgF2L-JiYzFTQhUd3QvTdqPRjd1I_oy87AfQf5g,54836
40
+ xradio/measurement_set/_utils/_msv2/create_antenna_xds.py,sha256=s3HnTbyOl7h6pAocJ4dpd095s7qHSSngeQ34Ygo8Uk0,17650
41
+ xradio/measurement_set/_utils/_msv2/create_field_and_source_xds.py,sha256=unKWb-bIjZ9GoN-jbUzTAZ-GGf7HU4DWLl9km-xzGho,33558
42
+ xradio/measurement_set/_utils/_msv2/msv2_to_msv4_meta.py,sha256=ZpxJJ2yTjjEy6A4XWS9eT-1J92jLwR8CNyoDBfhAVm8,1572
43
+ xradio/measurement_set/_utils/_msv2/msv4_info_dicts.py,sha256=cMgD6EB1pRShL6TBVSpom0VhkqTnsYNi9vxz_gfgGtU,11952
44
+ xradio/measurement_set/_utils/_msv2/msv4_sub_xdss.py,sha256=nXuiDhszP3AejUo1zlpqBcyL-R5bsRw-KTOP3M2-HI0,30453
45
+ xradio/measurement_set/_utils/_msv2/optimised_functions.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
46
+ xradio/measurement_set/_utils/_msv2/partition_queries.py,sha256=_eWxxgxEYRX1Pj1ZFHD_HIcrF9Rpfe6OJmp3uYJ2UiY,11970
47
+ xradio/measurement_set/_utils/_msv2/subtables.py,sha256=mrf7g7mbC4crtnQ0wFocPcFRNlvq_7e7iDzE5B6ugl4,843
48
+ xradio/measurement_set/_utils/_msv2/_tables/read.py,sha256=Q8zNzHxS0BpA1QIIGvU6OGJ4sLniSFcShP7I8VzRNFc,45506
49
+ xradio/measurement_set/_utils/_msv2/_tables/read_main_table.py,sha256=FFoTVpY8JNvcXnTvUiraWNU9gB9-_9GR7he0NbODabg,3168
50
+ xradio/measurement_set/_utils/_msv2/_tables/table_query.py,sha256=Uc1zeiU-rYtCsYXpij8jzFG5NPBYvIh70qW1srn7B98,1498
51
+ xradio/measurement_set/_utils/_utils/interpolate.py,sha256=eIHEZ2VAW0JjMQQ08xaUcKQpko7HrQU2UfXKzVBlNwA,2262
52
+ xradio/measurement_set/_utils/_utils/partition_attrs.py,sha256=Uxtia6HPfPUcWfsT1cJAVTqoOS0zedZEsqgI9NWx1z4,3400
53
+ xradio/measurement_set/_utils/_utils/stokes_types.py,sha256=DMa8TmmS7BQ99Xm8c7ZjcRapMtLbrKVxrt4f0qUIOvg,561
54
+ xradio/measurement_set/_utils/_zarr/encoding.py,sha256=ze5ncHEBa-sVwJCayJa2irOdaxZEkYfBKObuij7uVRc,371
55
+ xradio/schema/__init__.py,sha256=tJqTUSwkwvkak_6eAZqhT5BQqunlfxciG07-y8uSrMY,683
56
+ xradio/schema/bases.py,sha256=TRwvOo2UA7ki-yV1Vcb5aDxAAxH2lTKtwoGx2m5VB4o,17512
57
+ xradio/schema/check.py,sha256=6bndBpmzkdiM3Ca1lquYEDb65H2ZZOGp2xQyIjqNHqU,23804
58
+ xradio/schema/common.py,sha256=Xv_pbTWfgl_K6GT3l2yYi0aKvp8X-9DSFT-bIkX7i20,2015
59
+ xradio/schema/dataclass.py,sha256=gzNqXzkBLV7ETEyddNOd_jRgP8rkivCkfUlURLz8z5c,19300
60
+ xradio/schema/export.py,sha256=qN8O8Wc9FtrYbiEmg1u66cN4coY_8QVHrZfb-oHhYp0,3510
61
+ xradio/schema/metamodel.py,sha256=F0lxnn0wLrsT2HrBo2zfIcmRLxD2yQwh7XfDciPNwVs,4963
62
+ xradio/schema/typing.py,sha256=RLFeMEPPHetc__kDaql1N1AcVuHArfk57DsUw2rZ5CE,10204
63
+ xradio/sphinx/__init__.py,sha256=VGY-7Ty3q67qpnBee0-znbiJ-Iy0F93UO--IpjEdHXc,380
64
+ xradio/sphinx/schema_table.py,sha256=CrhWMDYHwB7CbBMGfWtW20bLoBkeQZHd6l91cihvaBA,10709
65
+ xradio/testing/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
66
+ xradio/testing/_utils/__template__.py,sha256=1A3WJ2dcQwiIsxHqJscvn1Pmff7FhUXXxbpPOP0DT70,2010
67
+ xradio/testing/measurement_set/__init__.py,sha256=GyPuylaaWyC04c_B0hPUjwfUd3G7zaOL2dquZiQYSIA,1622
68
+ xradio/testing/measurement_set/checker.py,sha256=39wbX0xcLm6gsPiVTASbOciuoF_WzGOAcVe-7wir0Xg,4566
69
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+ xradio-1.1.1.dist-info/licenses/LICENSE.txt,sha256=9CYIJt7riOXo9AD0eXBZviLxo_HebD-2JJI8oiWtzfg,1807
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+ xradio-1.1.1.dist-info/METADATA,sha256=Isdrfu_9EZxyyAKlx9WQ17cil-ja5CFc7wUyUaunE50,9786
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+ xradio-1.1.1.dist-info/RECORD,,
{xradio-1.0.2.dist-info → xradio-1.1.1.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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1
  Wheel-Version: 1.0
2
- Generator: setuptools (80.9.0)
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+ Generator: setuptools (80.10.2)
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3
  Root-Is-Purelib: true
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4
  Tag: py3-none-any
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xradio-1.0.2.dist-info/RECORD DELETED
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- xradio/image/_util/_zarr/xds_to_zarr.py,sha256=nsDvDD-kuMuMF2dDlj0jTxSW4mdR-jjIsvXHi5uIERU,2373
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