xradio 0.0.34__py3-none-any.whl → 0.0.37__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- xradio/_utils/list_and_array.py +3 -1
- xradio/_utils/schema.py +190 -0
- xradio/_utils/zarr/common.py +11 -5
- xradio/image/_util/_zarr/xds_from_zarr.py +15 -2
- xradio/image/_util/_zarr/zarr_low_level.py +65 -14
- xradio/schema/bases.py +37 -8
- xradio/schema/check.py +15 -3
- xradio/schema/dataclass.py +2 -2
- xradio/vis/_processing_set.py +136 -10
- xradio/vis/_vis_utils/_ms/_tables/read.py +9 -0
- xradio/vis/_vis_utils/_ms/conversion.py +129 -103
- xradio/vis/_vis_utils/_ms/create_antenna_xds.py +482 -0
- xradio/vis/_vis_utils/_ms/create_field_and_source_xds.py +91 -45
- xradio/vis/_vis_utils/_ms/msv2_to_msv4_meta.py +1 -105
- xradio/vis/_vis_utils/_ms/msv4_sub_xdss.py +22 -235
- xradio/vis/_vis_utils/_utils/xds_helper.py +10 -2
- xradio/vis/convert_msv2_to_processing_set.py +6 -1
- xradio/vis/load_processing_set.py +2 -2
- xradio/vis/read_processing_set.py +6 -3
- xradio/vis/schema.py +584 -169
- {xradio-0.0.34.dist-info → xradio-0.0.37.dist-info}/METADATA +1 -1
- {xradio-0.0.34.dist-info → xradio-0.0.37.dist-info}/RECORD +25 -23
- {xradio-0.0.34.dist-info → xradio-0.0.37.dist-info}/WHEEL +1 -1
- {xradio-0.0.34.dist-info → xradio-0.0.37.dist-info}/LICENSE.txt +0 -0
- {xradio-0.0.34.dist-info → xradio-0.0.37.dist-info}/top_level.txt +0 -0
xradio/vis/schema.py
CHANGED
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@@ -12,10 +12,16 @@ import numpy
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# Dimensions
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Time = Literal["time"]
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""" Observation time dimension """
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-
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""" Antenna
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"""
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AntennaName = Literal["antenna_name"]
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""" Antenna name dimension """
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StationId = Literal["station_id"]
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""" Station ID dimension """
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ReceptorId = Literal["receptor_id"]
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""" Receptor ID dimension """
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ReceptorLabel = Literal["receptor_label"]
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""" Receptor label dimension """
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ToneLabel = Literal["tone_label"]
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""" Tone label dimension """
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BaselineId = Literal["baseline_id"]
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""" Baseline ID dimension """
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Frequency = Literal["frequency"]
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@@ -24,40 +30,77 @@ Polarization = Literal["polarization"]
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""" Polarization dimension """
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UvwLabel = Literal["uvw_label"]
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""" Coordinate dimension of UVW data (typically shape 3 for 'u', 'v', 'w') """
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""" Coordinate
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SkyDirLabel = Literal["sky_dir_label"]
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""" Coordinate labels of sky directions (typically shape 2 and 'ra', 'dec') """
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SphericalDirLabel = Literal["spherical_dir_label"]
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""" Coordinate labels of spherical directions (shape 2 and 'lon', 'lat1' """
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SkyPosLabel = Literal["sky_pos_label"]
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""" Coordinate labels of sky positions (typically shape 3 and 'ra', 'dec', 'dist') """
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SphericalPosLabel = Literal["spherical_pos_label"]
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""" Coordinate labels of spherical positions (shape shape 3 and 'lon', 'lat1', 'dist2') """
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EllipsoidPosLabel = Literal["ellipsoid_pos_label"]
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""" Coordinate labels of geodetic earth location data (typically shape 3 and 'lon', 'lat', 'height')"""
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CartesianPosLabel = Literal["cartesian_pos_label"]
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""" Coordinate labels of geocentric earth location data (typically shape 3 and 'x', 'y', 'z')"""
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TimePhaseCal = Literal["time_phase_cal"]
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""" Coordinate label for VLBI-specific phase cal time axis """
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TimePolynomial = Literal["time_polynomial"]
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""" For data that is represented as variable in time using Taylor expansion """
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-
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"""
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PolyTerm = Literal["poly_term"]
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""" Polynomial term used in VLBI GAIN_CURVE """
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LineLabel = Literal["line_label"]
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""" Line labels (for line names and variables). """
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# Represents "no dimension", i.e. used for coordinates and data variables with
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# zero dimensions.
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ZD = tuple[()]
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#
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@dict_schema
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class SourceInfoDict:
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# TODO
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pass
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# Quantities
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@xarray_dataarray_schema
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class TimeArray:
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"""
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Representation of a time quantity.
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:py:class:`astropy.time.Time` serves as the reference implementation.
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Data can be converted as follows::
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astropy.time.Time(data * astropy.units.Unit(attrs['units'][0]),
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format=attrs['format'], scale=attrs['scale'])
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All formats that express time as floating point numbers since an epoch
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are permissible, so at present the realistic options are:
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* ``mjd`` (from 1858-11-17 00:00:00 UTC)
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* ``unix`` (from 1970-01-01 00:00:00 UTC)
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* ``unix_tai`` (from 1970-01-01 00:00:00 TAI)
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* ``cxcsec`` (from 1998-01-01 00:00:00 TT)
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* ``gps`` (from 1980-01-06 00:00:00 UTC)
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"""
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data: Data[ZD, float]
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"""Time since epoch, typically in seconds (see ``units``)."""
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scale: Attr[str] = "tai"
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"""
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"""
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Time scale of data. Must be one of ``(‘tai’, ‘tcb’, ‘tcg’, ‘tdb’, ‘tt’, ‘ut1’, ‘utc’)``,
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see :py:class:`astropy.time.Time`
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"""
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format: Attr[str] = "unix_tai"
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"""Time representation and epoch, see :py:class:`TimeArray`."""
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type: Attr[str] = "time"
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units: Attr[list] = ("s",)
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units: Attr[list[str]] = ("s",)
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@xarray_dataarray_schema
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class SkyCoordArray:
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data: Data[
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data: Data[Union[SkyDirLabel, SkyPosLabel], float]
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type: Attr[str] = "sky_coord"
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units: Attr[list] = ("rad", "rad")
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units: Attr[list[str]] = ("rad", "rad")
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frame: Attr[str] = ""
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"""
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From fixvis docs: clean and the im tool ignore the reference frame
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"""
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class
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@xarray_dataarray_schema
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class SkyCoordOffsetArray:
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data: Data[Union[SkyDirLabel, SkyPosLabel], float]
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type: Attr[str] = "sky_coord"
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units: Attr[list[str]] = ("rad", "rad")
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@xarray_dataarray_schema
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class QuantityArray:
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"""
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Anonymous quantity, possibly with associated units
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Often used for distances / differences (integration time, channel width etcetera).
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"""
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data: Data[ZD, float]
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units: Attr[list[str]]
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type: Attr[str] = "quantity"
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# Coordinates / Axes
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@xarray_dataarray_schema
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class TimeCoordArray:
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"""Data model of visibility time axis. See also :py:class:`TimeArray`."""
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data: Data[Time, float]
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"""
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Time, expressed in seconds since the epoch (see ``scale`` &
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``format``), see also see :py:class:`TimeArray`.
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"""
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integration_time: Optional[Attr[QuantityArray]] = None
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""" The nominal sampling interval (ms v2). Units of seconds. """
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effective_integration_time: Optional[Attr[str]] = None
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"""
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Name of data array that contains the integration time that includes
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the effects of missing data.
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"""
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type: Attr[str] = "time"
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""" Coordinate type. Should be ``"time"``. """
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units: Attr[list[str]] = ("s",)
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""" Units to associate with axis"""
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scale: Attr[str] = "tai"
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""" Astropy time scales, see :py:class:`TimeArray` """
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format: Attr[str] = "unix"
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""" Astropy format, see :py:class:`TimeArray`"""
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long_name: Optional[Attr[str]] = "Observation Time"
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""" Long-form name to use for axis"""
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@xarray_dataset_schema
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class FieldSourceXds:
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"""
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Field positions for each source.
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For single dishes, this is the nominal pointing direction.
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"""
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source_name: Optional[Coord[Union[ZD, Time], str]]
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""" Source name. """
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field_name: Optional[Coord[Union[ZD, Time], str]]
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"""Field name."""
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time: Optional[Coordof[TimeCoordArray]]
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"""Midpoint of time for which this set of parameters is accurate"""
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line_label: Optional[Coord[LineLabel, str]]
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""" Line labels (for line names and variables). """
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line_names: Optional[Coord[Union[tuple[LineLabel], tuple[Time, LineLabel]], str]]
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""" Line names (e.g. v=1, J=1-0, SiO). """
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FIELD_PHASE_CENTER: Optional[Data[Union[ZD, Time], SkyCoordOffsetArray]]
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"""
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Offset from the SOURCE_DIRECTION that gives the direction of phase
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center for which the fringes have been stopped-that is a point source in
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this direction will produce a constant measured phase (page 2 of
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https://articles.adsabs.harvard.edu/pdf/1999ASPC..180...79F). For
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conversion from MSv2, frame refers column keywords by default. If frame
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varies with field, it refers DelayDir_Ref column instead.
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"""
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FIELD_DELAY_CENTER: Optional[
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Data[Union[tuple[SkyDirLabel], tuple[Time, SkyDirLabel]], numpy.float64]
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]
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"""
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Offset from the SOURCE_DIRECTION that gives the direction of delay
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center where coherence is maximized by inserting delay into one element of
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an interferometer to compensate for the geometrical and instrumental
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differential delay. (For conversion from MSv2, frame refers column keywords
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by default. If frame varies with field, it refers PhaseDir_Ref column
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instead.)
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"""
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SOURCE_LOCATION: Optional[
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Data[
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Union[
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tuple[SkyPosLabel],
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tuple[Time, SkyPosLabel],
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tuple[SkyDirLabel],
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tuple[Time, SkyDirLabel],
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],
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numpy.float64,
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]
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]
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"""
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CASA Table Cols: RA,DEC,Rho."Astrometric RA and Dec and Geocentric
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distance with respect to the observer’s location (Geocentric). "Adjusted
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for light-time aberration only. With respect to the reference plane and
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equinox of the chosen system (ICRF or FK4/B1950). If the FK4/B1950 frame
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output is selected, elliptic aberration terms are added. Astrometric RA/DEC
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is generally used when comparing or reducing data against a star catalog."
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https://ssd.jpl.nasa.gov/horizons/manual.html : 1. Astrometric RA & DEC
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"""
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delay_direction: SkyCoordArray
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LINE_REST_FREQUENCY: Optional[
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Data[Union[tuple[LineLabel], tuple[Time, LineLabel]], numpy.float64]
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]
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""" Rest frequencies for the transitions. """
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LINE_SYSTEMIC_VELOCITY: Optional[
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Data[Union[tuple[LineLabel], tuple[Time, LineLabel]], numpy.float64]
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]
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""" Systemic velocity at reference """
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SOURCE_RADIAL_VELOCITY: Optional[Data[tuple[Time], numpy.float64]]
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""" CASA Table Cols: RadVel. Geocentric distance rate """
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NORTH_POLE_POSITION_ANGLE: Optional[Data[tuple[Time], numpy.float64]]
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""" CASA Table cols: NP_ang, "Targets' apparent north-pole position angle (counter-clockwise with respect to direction of true-of-date reference-frame north pole) and angular distance from the sub-observer point (center of disc) at print time. A negative distance indicates the north-pole is on the hidden hemisphere." https://ssd.jpl.nasa.gov/horizons/manual.html : 17. North pole position angle & distance from disc center. """
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NORTH_POLE_ANGULAR_DISTANCE: Optional[Data[tuple[Time], numpy.float64]]
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""" CASA Table cols: NP_dist, "Targets' apparent north-pole position angle (counter-clockwise with respect to direction of true-of date reference-frame north pole) and angular distance from the sub-observer point (center of disc) at print time. A negative distance indicates the north-pole is on the hidden hemisphere."https://ssd.jpl.nasa.gov/horizons/manual.html : 17. North pole position angle & distance from disc center. """
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SUB_OBSERVER_DIRECTION: Optional[
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Data[tuple[Time, SphericalDirLabel], numpy.float64]
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]
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""" CASA Table cols: DiskLong, DiskLat. "Apparent planetodetic longitude and latitude of the center of the target disc seen by the OBSERVER at print-time. This is not exactly the same as the "nearest point" for a non-spherical target shape (since the center of the disc might not be the point closest to the observer), but is generally very close if not a very irregular body shape. The IAU2009 rotation models are used except for Earth and MOON, which use higher-precision models. For the gas giants Jupiter, Saturn, Uranus and Neptune, IAU2009 longitude is based on the "System III" prime meridian rotation angle of the magnetic field. By contrast, pole direction (thus latitude) is relative to the body dynamical equator. There can be an offset between the magnetic pole and the dynamical pole of rotation. Down-leg light travel-time from target to observer is taken into account. Latitude is the angle between the equatorial plane and perpendicular to the reference ellipsoid of the body and body oblateness thereby included. The reference ellipsoid is an oblate spheroid with a single flatness coefficient in which the y-axis body radius is taken to be the same value as the x-axis radius. Whether longitude is positive to the east or west for the target will be indicated at the end of the output ephemeris." https://ssd.jpl.nasa.gov/horizons/manual.html : 14. Observer sub-longitude & sub-latitude """
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SUB_SOLAR_POSITION: Optional[Data[tuple[Time, SphericalPosLabel], numpy.float64]]
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""" CASA Table cols: Sl_lon, Sl_lat, r. "Heliocentric distance along with "Apparent sub-solar longitude and latitude of the Sun on the target. The apparent planetodetic longitude and latitude of the center of the target disc as seen from the Sun, as seen by the observer at print-time. This is _NOT_ exactly the same as the "sub-solar" (nearest) point for a non-spherical target shape (since the center of the disc seen from the Sun might not be the closest point to the Sun), but is very close if not a highly irregular body shape. Light travel-time from Sun to target and from target to observer is taken into account. Latitude is the angle between the equatorial plane and the line perpendicular to the reference ellipsoid of the body. The reference ellipsoid is an oblate spheroid with a single flatness coefficient in which the y-axis body radius is taken to be the same value as the x-axis radius. Uses IAU2009 rotation models except for Earth and Moon, which uses a higher precision models. Values for Jupiter, Saturn, Uranus and Neptune are Set III, referring to rotation of their magnetic fields. Whether longitude is positive to the east or west for the target will be indicated at the end of the output ephemeris." https://ssd.jpl.nasa.gov/horizons/manual.html : 15. Solar sub-longitude & sub-latitude """
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""" CASA Table cols: rdot."The Sun's apparent range-rate relative to the target, as seen by the observer. A positive "rdot" means the target was moving away from the Sun, negative indicates movement toward the Sun." https://ssd.jpl.nasa.gov/horizons/manual.html : 19. Solar range & range-rate (relative to target) """
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""" CASA Table cols: phang.""phi" is the true PHASE ANGLE at the observers' location at print time. "PAB-LON" and "PAB-LAT" are the FK4/B1950 or ICRF/J2000 ecliptic longitude and latitude of the phase angle bisector direction; the outward directed angle bisecting the arc created by the apparent vector from Sun to target center and the astrometric vector from observer to target center. For an otherwise uniform ellipsoid, the time when its long-axis is perpendicular to the PAB direction approximately corresponds to lightcurve maximum (or maximum brightness) of the body. PAB is discussed in Harris et al., Icarus 57, 251-258 (1984)." https://ssd.jpl.nasa.gov/horizons/manual.html : Phase angle and bisector """
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""" Astropy format, see :py:class:`astropy.time.Time`. Default seconds from 1970-01-01 00:00:00 UTC """
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Antenna id of an antenna. Maps to ``antenna_id``
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in :py:class:`AntennaXds`.
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class
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long_name: Optional[Attr[str]] = "
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class BaselineAntennaNameArray:
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"""Array of antenna_name by baseline_id, as used in main_xds and main_sd_xds
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(antenna_name by baseline_id dim"""
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data: Data[BaselineId, str]
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"""Unique id for each baseline."""
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long_name: Optional[Attr[str]] = "Antenna name by baseline_id"
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@xarray_dataarray_schema
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class AntennaNameArray:
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"""TODO: documentation"""
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+
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"""Unique name for each antenna(_station)."""
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""" Time, expressed in SI seconds since the epoch. """
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spectral_window_name: Attr[str]
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|
""" Name associated with spectral window. """
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|
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frequency_group_name: Optional[Attr[str]]
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|
""" Name associated with frequency group - needed for multi-band VLBI fringe-fitting."""
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|
reference_frequency: Attr[SpectralCoordArray]
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|
""" A frequency representative of the spectral window, usually the sky
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frequency corresponding to the DC edge of the baseband. Used by the calibration
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system if a fixed scaling frequency is required or in algorithms to identify the
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observing band. """
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channel_width: Attr[
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channel_width: Attr[QuantityArray] # Not SpectralCoord, as it is a difference
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""" The nominal channel bandwidth. Same units as data array (see units key). """
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doppler: Optional[Attr[DopplerXds]]
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""" Doppler tracking information """
|
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@@ -312,14 +500,40 @@ class VisibilityArray:
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tuple[Time, BaselineId, Frequency, Polarization],
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Union[numpy.complex64, numpy.complex128],
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frequency: Coord[tuple[()], FrequencyArray]
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polarization: Coord[tuple[()], PolarizationArray]
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frequency: Coord[tuple[()], FrequencyArray]
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+
time: Coord[ZD, TimeCoordArray]
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|
+
baseline_id: Coord[ZD, BaselineArray]
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+
polarization: Coord[ZD, PolarizationArray]
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+
frequency: Coord[ZD, FrequencyArray]
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field_and_source_xds: Attr[FieldSourceXds]
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long_name: Optional[Attr[str]] = "Visibility values"
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""" Long-form name to use for axis. Should be ``"Visibility values"``"""
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units: Attr[list] = ("Jy",)
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|
+
@xarray_dataarray_schema
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+
class SpectrumArray:
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"""Definition of xr.DataArray for SPECTRUM data (single dish)"""
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|
+
|
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523
|
+
data: Data[
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|
+
tuple[Time, AntennaName, Frequency, Polarization],
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+
Union[numpy.float64, numpy.float32, numpy.float16],
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]
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+
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+
time: Coordof[TimeCoordArray]
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|
+
antenna_name: Coordof[AntennaNameArray]
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|
+
frequency: Coordof[FrequencyArray]
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531
|
+
polarization: Coordof[PolarizationArray]
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|
+
|
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533
|
+
field_and_source_xds: Attr[FieldSourceXds]
|
|
534
|
+
long_name: Optional[Attr[str]] = "Spectrum values"
|
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535
|
+
""" Long-form name to use for axis. Should be ``"Spectrum values"``"""
|
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|
+
units: Attr[list[str]] = ("Jy",)
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@xarray_dataarray_schema
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@@ -335,11 +549,13 @@ class FlagArray:
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tuple[Time, BaselineId, Frequency, Polarization],
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|
tuple[Time, BaselineId, Frequency],
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|
tuple[Time, BaselineId],
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+
tuple[Time, AntennaName, Frequency, Polarization], # SD
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],
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bool,
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time: Coordof[
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baseline_id: Coordof[BaselineArray]
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556
|
+
time: Coordof[TimeCoordArray]
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557
|
+
baseline_id: Optional[Coordof[BaselineArray]] # Only IF
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+
antenna_name: Optional[Coordof[AntennaNameArray]] # Only SD
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559
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frequency: Coordof[FrequencyArray]
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|
polarization: Optional[Coordof[PolarizationArray]] = None
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long_name: Optional[Attr[str]] = "Visibility flags"
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@@ -360,12 +576,14 @@ class WeightArray:
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tuple[Time, BaselineId, Frequency, Polarization],
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tuple[Time, BaselineId, Frequency],
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tuple[Time, BaselineId],
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|
+
tuple[Time, AntennaName, Frequency, Polarization], # SD
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],
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364
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Union[numpy.float16, numpy.float32, numpy.float64],
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365
582
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"""Visibility weights"""
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time: Coordof[
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|
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baseline_id: Coordof[BaselineArray]
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584
|
+
time: Coordof[TimeCoordArray]
|
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585
|
+
baseline_id: Optional[Coordof[BaselineArray]] # Only IF
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|
+
antenna_name: Optional[Coordof[AntennaNameArray]] # Only SD
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frequency: Optional[Coordof[FrequencyArray]] = None
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polarization: Optional[Coordof[PolarizationArray]] = None
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|
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long_name: Optional[Attr[str]] = "Visibility weights"
|
|
@@ -406,6 +624,9 @@ class UvwArray:
|
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406
624
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tuple[Time, BaselineId, Frequency, Polarization, UvwLabel],
|
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407
625
|
tuple[Time, BaselineId, Frequency, UvwLabel],
|
|
408
626
|
tuple[Time, BaselineId, UvwLabel],
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627
|
+
tuple[Time, AntennaName, UvwLabel], # SD
|
|
628
|
+
tuple[Time, AntennaName, Frequency, UvwLabel], # SD
|
|
629
|
+
tuple[Time, AntennaName, Frequency, Polarization], # SD
|
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],
|
|
410
631
|
Union[
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411
632
|
numpy.float16,
|
|
@@ -414,8 +635,9 @@ class UvwArray:
|
|
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414
635
|
],
|
|
415
636
|
]
|
|
416
637
|
"""Baseline coordinates from ``baseline_antenna2_id`` to ``baseline_antenna1_id``"""
|
|
417
|
-
time: Coordof[
|
|
418
|
-
baseline_id: Coordof[BaselineArray]
|
|
638
|
+
time: Coordof[TimeCoordArray]
|
|
639
|
+
baseline_id: Optional[Coordof[BaselineArray]] # Only IF
|
|
640
|
+
antenna_name: Optional[Coordof[AntennaNameArray]] # Only SD
|
|
419
641
|
frequency: Optional[Coordof[FrequencyArray]] = None
|
|
420
642
|
polarization: Optional[Coordof[PolarizationArray]] = None
|
|
421
643
|
uvw_label: Coordof[UvwLabelArray] = ("u", "v", "w")
|
|
@@ -433,12 +655,14 @@ class TimeSamplingArray:
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|
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433
655
|
tuple[Time, BaselineId, Frequency, Polarization],
|
|
434
656
|
tuple[Time, BaselineId, Frequency],
|
|
435
657
|
tuple[Time, BaselineId],
|
|
658
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+
tuple[Time, AntennaName], # SD
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],
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float,
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time: Coordof[
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baseline_id: Coordof[BaselineArray]
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time: Coordof[TimeCoordArray]
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baseline_id: Optional[Coordof[BaselineArray]] # Only IF
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antenna_name: Optional[Coordof[AntennaNameArray]] # Only SD
|
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frequency: Optional[Coordof[FrequencyArray]] = None
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polarization: Optional[Coordof[PolarizationArray]] = None
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@@ -448,7 +672,7 @@ class TimeSamplingArray:
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""" Astropy format, see :py:class:`astropy.time.Time`. Default seconds from 1970-01-01 00:00:00 UTC """
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long_name: Optional[Attr[str]] = "Time sampling data"
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units: Attr[str] = "s"
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units: Attr[list[str]] = ("s",)
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@xarray_dataarray_schema
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@@ -470,11 +694,11 @@ class FreqSamplingArray:
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:py:class:`VisibilityXds`.
|
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"""
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frequency: Coordof[FrequencyArray]
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time: Optional[Coordof[
|
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+
time: Optional[Coordof[TimeCoordArray]] = None
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baseline_id: Optional[Coordof[BaselineArray]] = None
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polarization: Optional[Coordof[PolarizationArray]] = None
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long_name: Optional[Attr[str]] = "Frequency sampling data"
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units: Attr[str] = "Hz"
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units: Attr[list[str]] = ("Hz",)
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frame: Attr[str] = "icrs"
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"""
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Astropy velocity reference frames (see :external:ref:`astropy-spectralcoord`).
|
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@@ -489,105 +713,220 @@ class FreqSamplingArray:
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@xarray_dataset_schema
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class AntennaXds:
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#
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"""Antenna
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""
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+
# Coordinates
|
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antenna_name: Coordof[AntennaNameArray]
|
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|
+
""" Antenna name """
|
|
719
|
+
station: Coord[AntennaName, str]
|
|
720
|
+
""" Name of the station pad (relevant to arrays with moving antennas). """
|
|
721
|
+
mount: Coord[AntennaName, str]
|
|
722
|
+
""" Mount type of the antenna. Reserved keywords include: ”EQUATORIAL” - equatorial mount;
|
|
723
|
+
”ALT-AZ” - azimuth-elevation mount;
|
|
724
|
+
"ALT-AZ+ROTATOR" alt-az mount with feed rotator; introduced for ASKAP dishes;
|
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725
|
+
"ALT-AZ+NASMYTH-R": Nasmyth mount with receivers at the right-hand side of the cabin. Many high-frequency antennas used for VLBI have such a mount typel;
|
|
726
|
+
"ALT-AZ+NASMYTH-L:: Nasmyth mount with receivers at the left-hand side of the cabin.
|
|
727
|
+
”X-Y” - x-y mount;
|
|
728
|
+
”SPACE-HALCA” - specific orientation model."""
|
|
729
|
+
telescope_name: Optional[Coord[AntennaName, str]]
|
|
730
|
+
""" Useful when data is combined from mutiple arrays for example ACA + ALMA. """
|
|
731
|
+
# TODO: receptor_label, polarization_type, sky_dir_label set as optional
|
|
732
|
+
# for datasets like test_alma_ephemris_mosaic. See also BEAM_OFFSET below.
|
|
733
|
+
receptor_label: Optional[Coord[ReceptorLabel, str]]
|
|
734
|
+
""" Names of receptors """
|
|
735
|
+
polarization_type: Optional[Coord[tuple[AntennaName, ReceptorLabel], str]]
|
|
736
|
+
""" Polarization type to which each receptor responds (e.g. ”R”,”L”,”X” or ”Y”).
|
|
737
|
+
This is the receptor polarization type as recorded in the final correlated data (e.g. ”RR”); i.e.
|
|
738
|
+
as measured after all polarization combiners. ['X','Y'], ['R','L'] """
|
|
739
|
+
cartesian_pos_label: Optional[Coord[CartesianPosLabel, str]]
|
|
740
|
+
""" (x,y,z) - either cartesian or ellipsoid """
|
|
741
|
+
ellipsoid_pos_label: Optional[Coord[EllipsoidPosLabel, str]]
|
|
742
|
+
""" (lon, lat, dist) - either cartesian or ellipsoid"""
|
|
743
|
+
sky_dir_label: Optional[Coord[SkyDirLabel, str]]
|
|
744
|
+
""" ra, dec """
|
|
745
|
+
time: Optional[Coordof[TimeCoordArray]]
|
|
746
|
+
""" Time for VLBI phase cal"""
|
|
747
|
+
time_phase_cal: Optional[Coord[TimePhaseCal, numpy.float64]]
|
|
748
|
+
""" Time for VLBI phase cal"""
|
|
749
|
+
tone_label: Optional[Coord[ToneLabel, str]]
|
|
750
|
+
""" ? """
|
|
751
|
+
gain_curve_type: Optional[Coord[AntennaName, str]]
|
|
752
|
+
""" ? """
|
|
753
|
+
|
|
754
|
+
# Data variables
|
|
755
|
+
ANTENNA_POSITION: Data[
|
|
756
|
+
Union[
|
|
757
|
+
tuple[AntennaName, EllipsoidPosLabel], tuple[AntennaName, CartesianPosLabel]
|
|
758
|
+
],
|
|
759
|
+
QuantityArray,
|
|
760
|
+
] # EarthLocationArray
|
|
523
761
|
"""
|
|
524
762
|
In a right-handed frame, X towards the intersection of the equator and
|
|
525
763
|
the Greenwich meridian, Z towards the pole.
|
|
526
764
|
"""
|
|
527
|
-
|
|
765
|
+
ANTENNA_FEED_OFFSET: Data[
|
|
766
|
+
Union[
|
|
767
|
+
tuple[AntennaName, EllipsoidPosLabel], tuple[AntennaName, CartesianPosLabel]
|
|
768
|
+
],
|
|
769
|
+
QuantityArray,
|
|
770
|
+
]
|
|
528
771
|
"""
|
|
529
772
|
Offset of feed relative to position (``Antenna_Table.offset + Feed_Table.position``).
|
|
530
773
|
"""
|
|
531
|
-
|
|
774
|
+
ANTENNA_DISH_DIAMETER: Optional[Data[tuple[AntennaName], QuantityArray]]
|
|
532
775
|
"""
|
|
533
776
|
Nominal diameter of dish, as opposed to the effective diameter.
|
|
534
777
|
"""
|
|
535
|
-
|
|
778
|
+
ANTENNA_EFFECTIVE_DISH_DIAMETER: Optional[
|
|
779
|
+
Data[tuple[AntennaName, ReceptorLabel, SkyDirLabel], QuantityArray]
|
|
780
|
+
]
|
|
781
|
+
""" Airy Disk Model .... """
|
|
782
|
+
|
|
783
|
+
# TODO: setting BEAM_OFFSET and RECEPTOR_ANGLE as optional for now, as it
|
|
784
|
+
# is not present in some datasets (example: test_alma_ephemris_mosaic)
|
|
785
|
+
BEAM_OFFSET: Optional[Data[tuple[AntennaName, ReceptorLabel], SkyCoordArray]]
|
|
536
786
|
"""
|
|
537
787
|
Beam position offset, as defined on the sky but in the antenna
|
|
538
788
|
reference frame.
|
|
539
789
|
"""
|
|
540
|
-
RECEPTOR_ANGLE: Optional[Data[tuple[
|
|
790
|
+
RECEPTOR_ANGLE: Optional[Data[tuple[AntennaName, ReceptorLabel], QuantityArray]]
|
|
541
791
|
"""
|
|
542
792
|
Polarization reference angle. Converts into parallactic angle in the sky domain.
|
|
543
793
|
"""
|
|
544
|
-
FOCUS_LENGTH: Optional[Data[
|
|
794
|
+
FOCUS_LENGTH: Optional[Data[tuple[AntennaName], QuantityArray]]
|
|
545
795
|
"""
|
|
546
796
|
Focus length. As defined along the optical axis of the antenna.
|
|
547
797
|
"""
|
|
548
|
-
ARRAY_CENTER: Optional[Data[AntennaId, EarthLocationArray]]
|
|
549
|
-
EFFECTIVE_DISH_DIAMETER: Optional[Data[AntennaId, QuantityArray]]
|
|
550
798
|
|
|
551
|
-
|
|
552
|
-
|
|
799
|
+
GAIN_CURVE: Optional[
|
|
800
|
+
Data[tuple[AntennaName, ReceptorLabel, PolyTerm], numpy.float32]
|
|
801
|
+
]
|
|
802
|
+
""" VLBI. ? """
|
|
803
|
+
GAIN_CURVE_INTERVAL: Optional[Data[tuple[AntennaName], QuantityArray]]
|
|
804
|
+
""" VLBI. ? """
|
|
805
|
+
GAIN_CURVE_SENSITIVITY: Optional[
|
|
806
|
+
Data[tuple[AntennaName, ReceptorLabel], numpy.float32]
|
|
807
|
+
]
|
|
808
|
+
""" VLBI. ? """
|
|
809
|
+
PHASE_CAL: Optional[
|
|
810
|
+
Data[
|
|
811
|
+
Union[
|
|
812
|
+
tuple[AntennaName, Time, ReceptorLabel, ToneLabel],
|
|
813
|
+
tuple[AntennaName, TimePhaseCal, ReceptorLabel, ToneLabel],
|
|
814
|
+
],
|
|
815
|
+
numpy.complex64,
|
|
816
|
+
]
|
|
817
|
+
]
|
|
818
|
+
""" VLBI. ? """
|
|
819
|
+
PHASE_CAL_CABLE_CAL: Optional[
|
|
820
|
+
Data[
|
|
821
|
+
Union[tuple[AntennaName, Time], tuple[AntennaName, TimePhaseCal]],
|
|
822
|
+
QuantityArray,
|
|
823
|
+
]
|
|
824
|
+
]
|
|
825
|
+
""" VLBI. ? """
|
|
826
|
+
PHASE_CAL_INTERVAL: Optional[
|
|
827
|
+
Data[
|
|
828
|
+
Union[tuple[AntennaName, Time], tuple[AntennaName, TimePhaseCal]],
|
|
829
|
+
QuantityArray,
|
|
830
|
+
]
|
|
831
|
+
]
|
|
832
|
+
""" VLBI. ? """
|
|
833
|
+
PHASE_CAL_TONE_FREQUENCY: Optional[
|
|
834
|
+
Data[
|
|
835
|
+
Union[
|
|
836
|
+
tuple[AntennaName, Time, ReceptorLabel, ToneLabel],
|
|
837
|
+
tuple[AntennaName, TimePhaseCal, ReceptorLabel, ToneLabel],
|
|
838
|
+
],
|
|
839
|
+
QuantityArray,
|
|
840
|
+
]
|
|
841
|
+
]
|
|
842
|
+
""" VLBI. ? """
|
|
843
|
+
|
|
844
|
+
# Attributes
|
|
845
|
+
overall_telescope_name: Optional[Attr[str]]
|
|
553
846
|
"""
|
|
554
|
-
|
|
847
|
+
The name of the collection of arrays and dishes that were used for the observation.
|
|
848
|
+
In many instances this will only be a single array or dish. An example of a
|
|
849
|
+
telescope consistening of mutiple arrays and dishes is the EHT. The coordinate
|
|
850
|
+
telescope_name will give the names of the constituent arrays and dishes. From
|
|
851
|
+
MSv2 observation table.
|
|
555
852
|
"""
|
|
853
|
+
relocatable_antennas: Optional[Attr[bool]]
|
|
854
|
+
""" Can the antennas be moved (ALMA, VLA, NOEMA) """
|
|
556
855
|
type: Attr[str] = "antenna"
|
|
557
856
|
"""
|
|
558
857
|
Type of dataset. Expected to be ``antenna``
|
|
559
858
|
"""
|
|
560
859
|
|
|
561
860
|
|
|
861
|
+
@xarray_dataset_schema
|
|
862
|
+
class WeatherXds:
|
|
863
|
+
"""Weather. Contains station positions and time-dependent mean external
|
|
864
|
+
atmosphere and weather information"""
|
|
865
|
+
|
|
866
|
+
# Coordinates
|
|
867
|
+
time: Coordof[TimeCoordArray]
|
|
868
|
+
""" Mid-point of the time interval """
|
|
869
|
+
station_id: Coord[StationId, numpy.int64]
|
|
870
|
+
""" Station identifier """
|
|
871
|
+
antenna_name: Optional[Coordof[AntennaNameArray]]
|
|
872
|
+
""" Antenna identifier """
|
|
873
|
+
|
|
874
|
+
# Data variables (all optional)
|
|
875
|
+
H2O: Optional[Data[tuple[StationId, Time], QuantityArray]] = None
|
|
876
|
+
""" Average column density of water """
|
|
877
|
+
IONOS_ELECTRON: Optional[Data[tuple[StationId, Time], QuantityArray]] = None
|
|
878
|
+
""" Average column density of electrons """
|
|
879
|
+
PRESSURE: Optional[Data[tuple[StationId, Time], QuantityArray]] = None
|
|
880
|
+
""" Ambient atmospheric pressure """
|
|
881
|
+
REL_HUMIDITY: Optional[Data[tuple[StationId, Time], QuantityArray]] = None
|
|
882
|
+
""" Ambient relative humidity """
|
|
883
|
+
TEMPERATURE: Optional[Data[tuple[StationId, Time], QuantityArray]] = None
|
|
884
|
+
""" Ambient air temperature for an antenna """
|
|
885
|
+
DEW_POINT: Optional[Data[tuple[StationId, Time], QuantityArray]] = None
|
|
886
|
+
""" Dew point """
|
|
887
|
+
WIND_DIRECTION: Optional[Data[tuple[StationId, Time], QuantityArray]] = None
|
|
888
|
+
""" Average wind direction """
|
|
889
|
+
WIND_SPEED: Optional[Data[tuple[StationId, Time], QuantityArray]] = None
|
|
890
|
+
""" Average wind speed """
|
|
891
|
+
STATION_POSITION: Optional[Data[tuple[StationId], QuantityArray]] = None
|
|
892
|
+
""" Station position """
|
|
893
|
+
|
|
894
|
+
# Attributes
|
|
895
|
+
type: Attr[str] = "weather"
|
|
896
|
+
"""
|
|
897
|
+
Type of dataset.
|
|
898
|
+
"""
|
|
899
|
+
|
|
900
|
+
|
|
562
901
|
@xarray_dataset_schema
|
|
563
902
|
class PointingXds:
|
|
564
|
-
time: Coordof[
|
|
903
|
+
time: Coordof[TimeCoordArray]
|
|
565
904
|
"""
|
|
566
905
|
Mid-point of the time interval for which the information in this row is
|
|
567
906
|
valid. Required to use the same time measure reference as in visibility dataset
|
|
568
907
|
"""
|
|
569
|
-
|
|
908
|
+
antenna_name: Coordof[AntennaNameArray]
|
|
570
909
|
"""
|
|
571
|
-
Antenna
|
|
910
|
+
Antenna name, as specified by baseline_antenna1/2_name in visibility dataset
|
|
572
911
|
"""
|
|
573
|
-
|
|
912
|
+
sky_dir_label: Coord[SkyDirLabel, str]
|
|
574
913
|
"""
|
|
575
914
|
Direction labels.
|
|
576
915
|
"""
|
|
577
916
|
|
|
578
917
|
BEAM_POINTING: Data[
|
|
579
|
-
Union[tuple[Time,
|
|
918
|
+
Union[tuple[Time, AntennaName, TimePolynomial], tuple[Time, AntennaName]],
|
|
580
919
|
SkyCoordArray,
|
|
581
920
|
]
|
|
582
921
|
"""
|
|
583
922
|
Antenna pointing direction, optionally expressed as polynomial coefficients. DIRECTION in MSv3.
|
|
584
923
|
"""
|
|
585
|
-
DISH_MEASURED_POINTING: Optional[Data[tuple[Time,
|
|
924
|
+
DISH_MEASURED_POINTING: Optional[Data[tuple[Time, AntennaName], SkyCoordArray]]
|
|
586
925
|
"""
|
|
587
926
|
The current encoder values on the primary axes of the mount type for
|
|
588
927
|
the antenna. ENCODER in MSv3.
|
|
589
928
|
"""
|
|
590
|
-
OVER_THE_TOP: Optional[Data[tuple[Time,
|
|
929
|
+
OVER_THE_TOP: Optional[Data[tuple[Time, AntennaName], bool]]
|
|
591
930
|
|
|
592
931
|
|
|
593
932
|
@xarray_dataset_schema
|
|
@@ -597,15 +936,59 @@ class SpectralCoordXds:
|
|
|
597
936
|
|
|
598
937
|
|
|
599
938
|
@xarray_dataset_schema
|
|
600
|
-
class
|
|
939
|
+
class PhasedArrayXds:
|
|
601
940
|
# TODO
|
|
602
941
|
pass
|
|
603
942
|
|
|
604
943
|
|
|
605
944
|
@xarray_dataset_schema
|
|
606
|
-
class
|
|
607
|
-
|
|
608
|
-
|
|
945
|
+
class SystemCalibrationXds:
|
|
946
|
+
"""System calibration. Contains time- and frequency- variable
|
|
947
|
+
calibration measurements for each antenna, as indexed on receptor"""
|
|
948
|
+
|
|
949
|
+
# Coordinates
|
|
950
|
+
antenna_name: Coordof[AntennaNameArray]
|
|
951
|
+
""" Antenna identifier """
|
|
952
|
+
time: Coordof[TimeCoordArray]
|
|
953
|
+
""" Midpoint of time for which this set of parameters is accurate """
|
|
954
|
+
receptor_id: Optional[Coord[ReceptorId, numpy.float64]] = None
|
|
955
|
+
""" """
|
|
956
|
+
frequency: Optional[Coordof[FrequencyArray]] = None
|
|
957
|
+
""" """
|
|
958
|
+
|
|
959
|
+
# Data variables (all optional)
|
|
960
|
+
PHASE_DIFFERENCE: Optional[Data[tuple[Time, AntennaName], numpy.float64]] = None
|
|
961
|
+
""" Phase difference between receptor 0 and receptor 1 """
|
|
962
|
+
TCAL: Optional[
|
|
963
|
+
Data[tuple[Time, AntennaName, ReceptorId, Frequency], QuantityArray]
|
|
964
|
+
] = None
|
|
965
|
+
""" Calibration temp """
|
|
966
|
+
TRX: Optional[
|
|
967
|
+
Data[tuple[Time, AntennaName, ReceptorId, Frequency], QuantityArray]
|
|
968
|
+
] = None
|
|
969
|
+
""" Receiver temperature """
|
|
970
|
+
TSKY: Optional[
|
|
971
|
+
Data[tuple[Time, AntennaName, ReceptorId, Frequency], QuantityArray]
|
|
972
|
+
] = None
|
|
973
|
+
""" Sky temperature """
|
|
974
|
+
TSYS: Optional[
|
|
975
|
+
Data[tuple[Time, AntennaName, ReceptorId, Frequency], QuantityArray]
|
|
976
|
+
] = None
|
|
977
|
+
""" System temperature """
|
|
978
|
+
TANT: Optional[
|
|
979
|
+
Data[tuple[Time, AntennaName, ReceptorId, Frequency], QuantityArray]
|
|
980
|
+
] = None
|
|
981
|
+
""" Antenna temperature """
|
|
982
|
+
TANT_SYS: Optional[
|
|
983
|
+
Data[tuple[Time, AntennaName, ReceptorId, Frequency], QuantityArray]
|
|
984
|
+
] = None
|
|
985
|
+
""" TANT/TSYS """
|
|
986
|
+
|
|
987
|
+
# Attributes
|
|
988
|
+
type: Attr[str] = "system_calibration"
|
|
989
|
+
"""
|
|
990
|
+
Type of dataset.
|
|
991
|
+
"""
|
|
609
992
|
|
|
610
993
|
|
|
611
994
|
@xarray_dataset_schema
|
|
@@ -613,12 +996,17 @@ class VisibilityXds:
|
|
|
613
996
|
"""TODO: documentation"""
|
|
614
997
|
|
|
615
998
|
# --- Required Coordinates ---
|
|
616
|
-
time: Coordof[
|
|
999
|
+
time: Coordof[TimeCoordArray]
|
|
617
1000
|
"""
|
|
618
1001
|
The time coordinate is the mid-point of the nominal sampling interval, as
|
|
619
1002
|
specified in the ``ms_v4.time.attrs['integration_time']`` (ms v2 interval).
|
|
620
1003
|
"""
|
|
621
|
-
baseline_id: Coordof[BaselineArray]
|
|
1004
|
+
baseline_id: Optional[Coordof[BaselineArray]] # IF. not present in main_sd_xds
|
|
1005
|
+
""" Baseline ID """
|
|
1006
|
+
antenna_name: Optional[
|
|
1007
|
+
Coordof[AntennaNameArray]
|
|
1008
|
+
] # Single-dish. not present in main_xds
|
|
1009
|
+
""" antenna_name """
|
|
622
1010
|
frequency: Coordof[FrequencyArray]
|
|
623
1011
|
"""Center frequencies for each channel."""
|
|
624
1012
|
polarization: Coordof[PolarizationArray]
|
|
@@ -626,27 +1014,50 @@ class VisibilityXds:
|
|
|
626
1014
|
Labels for polarization types, e.g. ``['XX','XY','YX','YY']``, ``['RR','RL','LR','LL']``.
|
|
627
1015
|
"""
|
|
628
1016
|
uvw_label: Optional[Coordof[UvwLabelArray]]
|
|
629
|
-
|
|
630
|
-
#
|
|
631
|
-
|
|
1017
|
+
""" u,v,w """
|
|
1018
|
+
baseline_antenna1_name: Optional[Coordof[BaselineAntennaNameArray]] # IF
|
|
1019
|
+
"""Antenna name for 1st antenna in baseline. Maps to ``attrs['antenna_xds'].antenna_name``"""
|
|
1020
|
+
baseline_antenna2_name: Optional[Coordof[BaselineAntennaNameArray]] # IF
|
|
1021
|
+
"""Antenna name for 2nd antenna in baseline. Maps to ``attrs['antenna_xds'].antenna_name``"""
|
|
632
1022
|
|
|
633
1023
|
# --- Required Attributes ---
|
|
1024
|
+
partition_info: Attr[PartitionInfoDict]
|
|
634
1025
|
antenna_xds: Attr[AntennaXds]
|
|
635
1026
|
|
|
636
1027
|
# --- Optional Coordinates ---
|
|
637
|
-
|
|
638
|
-
"""Antenna id for 1st antenna in baseline. Maps to ``attrs['antenna_xds'].antenna_id``"""
|
|
639
|
-
baseline_antenna2_id: Optional[Coordof[BaselineAntennaArray]] = None
|
|
640
|
-
"""Antenna id for 2nd antenna in baseline. Maps to ``attrs['antenna_xds'].antenna_id``"""
|
|
641
|
-
scan_id: Optional[Coord[Time, int]] = None
|
|
1028
|
+
scan_number: Optional[Coord[Time, Union[numpy.int64, numpy.int32]]] = None
|
|
642
1029
|
"""Arbitary scan number to identify data taken in the same logical scan."""
|
|
643
1030
|
|
|
1031
|
+
# --- Required data variables ---
|
|
1032
|
+
|
|
644
1033
|
# --- Optional data variables / arrays ---
|
|
1034
|
+
|
|
1035
|
+
# Either VISIBILITY (interferometry) or SPECTRUM (single-dish)
|
|
1036
|
+
VISIBILITY: Optional[Dataof[VisibilityArray]] = None
|
|
645
1037
|
"""Complex visibilities, either simulated or measured by interferometer."""
|
|
1038
|
+
SPECTRUM: Optional[Dataof[SpectrumArray]] = None
|
|
1039
|
+
"""Single dish data, either simulated or measured by an antenna."""
|
|
1040
|
+
|
|
1041
|
+
VISIBILITY_CORRECTED: Optional[Dataof[VisibilityArray]] = None
|
|
1042
|
+
VISIBILITY_MODEL: Optional[Dataof[VisibilityArray]] = None
|
|
1043
|
+
SPECTRUM_CORRECTED: Optional[Dataof[SpectrumArray]] = None
|
|
1044
|
+
|
|
646
1045
|
FLAG: Optional[Dataof[FlagArray]] = None
|
|
647
1046
|
WEIGHT: Optional[Dataof[WeightArray]] = None
|
|
648
1047
|
UVW: Optional[Dataof[UvwArray]] = None
|
|
649
|
-
EFFECTIVE_INTEGRATION_TIME: Optional[
|
|
1048
|
+
EFFECTIVE_INTEGRATION_TIME: Optional[
|
|
1049
|
+
Data[
|
|
1050
|
+
Union[
|
|
1051
|
+
tuple[Time, BaselineId],
|
|
1052
|
+
tuple[Time, BaselineId, Frequency],
|
|
1053
|
+
tuple[Time, BaselineId, Frequency, Polarization],
|
|
1054
|
+
tuple[Time, AntennaName], # SD
|
|
1055
|
+
tuple[Time, AntennaName, Frequency], # SD
|
|
1056
|
+
tuple[Time, AntennaName, Frequency, Polarization], # SD
|
|
1057
|
+
],
|
|
1058
|
+
QuantityArray,
|
|
1059
|
+
]
|
|
1060
|
+
] = None
|
|
650
1061
|
"""
|
|
651
1062
|
The integration time, including the effects of missing data, in contrast to
|
|
652
1063
|
``integration_time`` attribute of the ``time`` coordinate,
|
|
@@ -665,11 +1076,12 @@ class VisibilityXds:
|
|
|
665
1076
|
"""Includes the effects of missing data unlike ``frequency``."""
|
|
666
1077
|
|
|
667
1078
|
# --- Optional Attributes ---
|
|
668
|
-
pointing_xds: Optional[Attr[PointingXds]] = None
|
|
669
|
-
source_xds: Optional[Attr[SourceXds]] = None
|
|
670
|
-
pased_array_xds: Optional[Attr[PhasedArrayXds]] = None
|
|
671
1079
|
observation_info: Optional[Attr[ObservationInfoDict]] = None
|
|
672
|
-
|
|
1080
|
+
processor_info: Optional[Attr[ProcessorInfoDict]] = None
|
|
1081
|
+
weather_xds: Optional[Attr[WeatherXds]] = None
|
|
1082
|
+
pointing_xds: Optional[Attr[PointingXds]] = None
|
|
1083
|
+
phased_array_xds: Optional[Attr[PhasedArrayXds]] = None
|
|
1084
|
+
system_calibration_xds: Optional[Attr[SystemCalibrationXds]] = None
|
|
673
1085
|
|
|
674
1086
|
version: Optional[Attr[str]] = None # TODO:
|
|
675
1087
|
"""Semantic version of xradio data format"""
|
|
@@ -685,3 +1097,6 @@ class VisibilityXds:
|
|
|
685
1097
|
"""
|
|
686
1098
|
|
|
687
1099
|
type: Attr[str] = "visibility"
|
|
1100
|
+
"""
|
|
1101
|
+
Dataset type
|
|
1102
|
+
"""
|