xnatqa 0.0.17__py3-none-any.whl → 0.0.19__py3-none-any.whl

xnatqa/launch.py

@@ -18,7 +18,10 @@ def main():
     MRsession = args.experiment
     dryrun    = args.dryrun
 
-    # authenticate with xnat using the ~/.xnat_auth file created earlier in the workflow
+    # make sure an xnat authentication files has already been created. See YXAIL documentation.
+    assert os.path.exists(os.path.expanduser('~/.xnat_auth')), 'xnat authentication needs to be run'
+
+    # authenticate with xnat using the ~/.xnat_auth file
     auth = yaxil.auth(alias = 'xnat')
 
     # open and automatically close a connection to XNAT using the auth

xnatqa/xnatqa.py

@@ -11,14 +11,10 @@ def main():
     parser.add_argument("--dryrun", default = "", action='store_true', help="Run in dry run mode: No upload to XNAT")
 
     args, unknown_args = parser.parse_known_args()
-    dicom_dir  = os.path.join(args.dicom_dir, 'SCANS')
+    dicom_dir  = os.path.join(args.dicom_dir)
     experiment = args.experiment
     dryrun     = args.dryrun
 
-    # run xnat authentication for this container. writes an ~/.xnat_auth file to the home directory
-    # this file is used in all subsequent calls to XNAT
-    os.system(f'xnat_auth --alias xnat --url $XNAT_HOST --username $XNAT_USER --password $XNAT_PASS')
-
     # tag all scans in this session
     tag_scans(dicom_dir, experiment, dryrun)
 

{xnatqa-0.0.17.dist-info → xnatqa-0.0.19.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: xnatqa
-Version: 0.0.17
+Version: 0.0.19
 Summary: A workflow for automatically tagging MRI scans within XNAT
 Author-email: Kyle Kurkela <kkurkela@bu.edu>
 License-Expression: MIT

xnatqa-0.0.19.dist-info/RECORD

@@ -0,0 +1,10 @@
+xnatqa/__init__.py,sha256=RIG_ihjfFD1upKlhlxI-9Fs4ISf0lIW4Zg7CaFirV4A,644
+xnatqa/launch.py,sha256=QWqLdwfbq28cmeJd4XQcV2wxs2ZGRX85uzFmxHydmfg,1963
+xnatqa/xnatqa.py,sha256=lWNFbtJPvM-0DuUV3pjL_xfPnBxEZqGK8PIdlBaxJWE,748
+xnatqa/tag/__init__.py,sha256=wXPBIbHucCqITYVZ4V5bt3VJWq8svyrJoBjbrpH1bNE,8969
+xnatqa-0.0.19.dist-info/licenses/LICENSE,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+xnatqa-0.0.19.dist-info/METADATA,sha256=Ze37T8xBNT1oigywvb7XA-b1nvUe6DDJeRewPXHcrj0,1187
+xnatqa-0.0.19.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
+xnatqa-0.0.19.dist-info/entry_points.txt,sha256=g5CvKDfx6vIIp76wdB1aiWe1SkBORj2S8gFReBBxBws,74
+xnatqa-0.0.19.dist-info/top_level.txt,sha256=FmRWgO6ww0FwyNs5ccyhP9FcAxI129qSJqLs2OKOxJw,7
+xnatqa-0.0.19.dist-info/RECORD,,

xnatqa-0.0.17.dist-info/RECORD

@@ -1,10 +0,0 @@
-xnatqa/__init__.py,sha256=RIG_ihjfFD1upKlhlxI-9Fs4ISf0lIW4Zg7CaFirV4A,644
-xnatqa/launch.py,sha256=jZTCAftrT5MBcbPKXNorFux5TkezyktJBhzJaKI4ypM,1797
-xnatqa/xnatqa.py,sha256=KUXfs6EAZX15K2s8JcsIXuUOV1swma_7gJw-IRkD1yM,1016
-xnatqa/tag/__init__.py,sha256=wXPBIbHucCqITYVZ4V5bt3VJWq8svyrJoBjbrpH1bNE,8969
-xnatqa-0.0.17.dist-info/licenses/LICENSE,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-xnatqa-0.0.17.dist-info/METADATA,sha256=NdGanatTgamPgLnL20wQHgJYdJj7eHU2ZGoNdnXs2eE,1187
-xnatqa-0.0.17.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
-xnatqa-0.0.17.dist-info/entry_points.txt,sha256=g5CvKDfx6vIIp76wdB1aiWe1SkBORj2S8gFReBBxBws,74
-xnatqa-0.0.17.dist-info/top_level.txt,sha256=FmRWgO6ww0FwyNs5ccyhP9FcAxI129qSJqLs2OKOxJw,7
-xnatqa-0.0.17.dist-info/RECORD,,