xnatqa 0.0.17__py3-none-any.whl → 0.0.18__py3-none-any.whl

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Files changed (9) hide show
  1. xnatqa/launch.py +4 -1
  2. xnatqa/xnatqa.py +0 -4
  3. {xnatqa-0.0.17.dist-info → xnatqa-0.0.18.dist-info}/METADATA +1 -1
  4. xnatqa-0.0.18.dist-info/RECORD +10 -0
  5. xnatqa-0.0.17.dist-info/RECORD +0 -10
  6. {xnatqa-0.0.17.dist-info → xnatqa-0.0.18.dist-info}/WHEEL +0 -0
  7. {xnatqa-0.0.17.dist-info → xnatqa-0.0.18.dist-info}/entry_points.txt +0 -0
  8. {xnatqa-0.0.17.dist-info → xnatqa-0.0.18.dist-info}/licenses/LICENSE +0 -0
  9. {xnatqa-0.0.17.dist-info → xnatqa-0.0.18.dist-info}/top_level.txt +0 -0
xnatqa/launch.py CHANGED
@@ -18,7 +18,10 @@ def main():
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  MRsession = args.experiment
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  dryrun = args.dryrun
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- # authenticate with xnat using the ~/.xnat_auth file created earlier in the workflow
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+ # make sure an xnat authentication files has already been created. See YXAIL documentation.
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+ assert os.path.exists(os.path.expanduser('~/.xnat_auth')), 'xnat authentication needs to be run'
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+
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+ # authenticate with xnat using the ~/.xnat_auth file
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  auth = yaxil.auth(alias = 'xnat')
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  # open and automatically close a connection to XNAT using the auth
xnatqa/xnatqa.py CHANGED
@@ -15,10 +15,6 @@ def main():
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  experiment = args.experiment
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  dryrun = args.dryrun
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- # run xnat authentication for this container. writes an ~/.xnat_auth file to the home directory
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- # this file is used in all subsequent calls to XNAT
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- os.system(f'xnat_auth --alias xnat --url $XNAT_HOST --username $XNAT_USER --password $XNAT_PASS')
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-
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  # tag all scans in this session
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  tag_scans(dicom_dir, experiment, dryrun)
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{xnatqa-0.0.17.dist-info → xnatqa-0.0.18.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: xnatqa
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- Version: 0.0.17
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+ Version: 0.0.18
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  Summary: A workflow for automatically tagging MRI scans within XNAT
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  Author-email: Kyle Kurkela <kkurkela@bu.edu>
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  License-Expression: MIT
xnatqa-0.0.18.dist-info/RECORD ADDED
@@ -0,0 +1,10 @@
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+ xnatqa/__init__.py,sha256=RIG_ihjfFD1upKlhlxI-9Fs4ISf0lIW4Zg7CaFirV4A,644
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+ xnatqa/launch.py,sha256=QWqLdwfbq28cmeJd4XQcV2wxs2ZGRX85uzFmxHydmfg,1963
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+ xnatqa/xnatqa.py,sha256=Ld6ARbw3czfRWKqubOdRW4VMBOCuONTr7uxjCbBPLrg,757
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+ xnatqa/tag/__init__.py,sha256=wXPBIbHucCqITYVZ4V5bt3VJWq8svyrJoBjbrpH1bNE,8969
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+ xnatqa-0.0.18.dist-info/licenses/LICENSE,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ xnatqa-0.0.18.dist-info/METADATA,sha256=YSR_e--Cs6nA5kOykqS50e7fdaR76ClMFAYiM3GPteY,1187
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+ xnatqa-0.0.18.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
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+ xnatqa-0.0.18.dist-info/entry_points.txt,sha256=g5CvKDfx6vIIp76wdB1aiWe1SkBORj2S8gFReBBxBws,74
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+ xnatqa-0.0.18.dist-info/top_level.txt,sha256=FmRWgO6ww0FwyNs5ccyhP9FcAxI129qSJqLs2OKOxJw,7
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+ xnatqa-0.0.18.dist-info/RECORD,,
xnatqa-0.0.17.dist-info/RECORD DELETED
@@ -1,10 +0,0 @@
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- xnatqa/__init__.py,sha256=RIG_ihjfFD1upKlhlxI-9Fs4ISf0lIW4Zg7CaFirV4A,644
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- xnatqa/launch.py,sha256=jZTCAftrT5MBcbPKXNorFux5TkezyktJBhzJaKI4ypM,1797
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- xnatqa/xnatqa.py,sha256=KUXfs6EAZX15K2s8JcsIXuUOV1swma_7gJw-IRkD1yM,1016
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- xnatqa/tag/__init__.py,sha256=wXPBIbHucCqITYVZ4V5bt3VJWq8svyrJoBjbrpH1bNE,8969
5
- xnatqa-0.0.17.dist-info/licenses/LICENSE,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- xnatqa-0.0.17.dist-info/METADATA,sha256=NdGanatTgamPgLnL20wQHgJYdJj7eHU2ZGoNdnXs2eE,1187
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- xnatqa-0.0.17.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
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- xnatqa-0.0.17.dist-info/entry_points.txt,sha256=g5CvKDfx6vIIp76wdB1aiWe1SkBORj2S8gFReBBxBws,74
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- xnatqa-0.0.17.dist-info/top_level.txt,sha256=FmRWgO6ww0FwyNs5ccyhP9FcAxI129qSJqLs2OKOxJw,7
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- xnatqa-0.0.17.dist-info/RECORD,,