xnatbidscli 2.0.0__py3-none-any.whl

xnatbidscli-2.0.0.dist-info/METADATA

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+Metadata-Version: 2.5
+Name: xnatbidscli
+Version: 2.0.0
+Summary: CLI for logging into XNAT, downloading neuroimaging experiments, and converting them to BIDS.
+Project-URL: Homepage, https://github.com/nimh-dsst/xnat-bids-cli
+Project-URL: Documentation, https://xnatbidscli.readthedocs.io/
+Project-URL: Repository, https://github.com/nimh-dsst/xnat-bids-cli
+Project-URL: Issues, https://github.com/nimh-dsst/xnat-bids-cli/issues
+Author-email: Eric Earl <eric.earl@nih.gov>
+Maintainer-email: NIMH Data Science and Sharing Team <nimhdsst@mail.nih.gov>
+License-Expression: MIT
+License-File: LICENSE
+Classifier: Development Status :: 3 - Alpha
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Science/Research
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
+Requires-Python: >=3.11
+Requires-Dist: bioread>=3; python_version < '3.12'
+Requires-Dist: cubids>=1.2.1
+Requires-Dist: dcm2bids>=3
+Requires-Dist: dcm2niix>=1.0.20260416
+Requires-Dist: nibabel<5.4,>=5.3; python_version < '3.12'
+Requires-Dist: nibabel>=5.4.2; python_version >= '3.12'
+Requires-Dist: numpy<2
+Requires-Dist: pandas<2.4,>=2
+Requires-Dist: phys2bids>=2.10; python_version < '3.12'
+Requires-Dist: pydicom>=2.4
+Requires-Dist: pyxnat>=1.6
+Requires-Dist: requests>=2
+Description-Content-Type: text/markdown
+
+# XNAT CLI for BIDS
+
+`xnatbidscli` is a command-line toolkit that takes neuroimaging data from login to analysis-ready dataset: authenticate against an XNAT (Extensible Neuroimaging Archive Toolkit) server, query and download experiments, convert them to BIDS (Brain Imaging Data Structure) with `dcm2bids`, group acquisitions with CuBIDS, map participants/sessions to anonymized IDs, and fold in physiological recordings — all through one CLI built on [PyXNAT](https://pyxnat.github.io/pyxnat/index.html).
+
+## User Guide
+
+Full documentation for every `xnatbidscli` subcommand, the on-disk layouts each one produces, and how the pieces fit together lives at [xnatbidscli.readthedocs.io](https://xnatbidscli.readthedocs.io/).
+
+## Installation
+
+Requires Python ≥ 3.11.
+
+```bash
+pip install xnatbidscli
+```
+
+See the [Installation guide](https://xnatbidscli.readthedocs.io/installation/) for installing unreleased features from source with uv and the full list of runtime dependencies.
+
+## Reporting Issues and Feature Requests
+
+Use the [GitHub Issues](https://github.com/nimh-dsst/xnat-bids-cli/issues) feature here to report anything wrong with the CLI, code, or docs. You can also provide feature requests via GitHub Issues.
+
+## Attribution
+
+Developed and tested primarily by [Eric Earl](https://github.com/ericearl) of the [NIMH Data Science and Sharing Team](https://github.com/nimh-dsst) primarily for the NIMH Intramural Research Program labs. Claude Code and GitHub Copilot were used to develop features, docs, and modifications, as prompted by Eric Earl.
+
+## License
+
+Distributed under the MIT License.

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xnatbidscli-2.0.0.dist-info/WHEEL

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+Wheel-Version: 1.0
+Generator: hatchling 1.32.4
+Root-Is-Purelib: true
+Tag: py3-none-any

xnatbidscli-2.0.0.dist-info/entry_points.txt

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+[console_scripts]
+xnatbidscli = xnatbidscli.cli:main

xnatbidscli-2.0.0.dist-info/licenses/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2026 NIMH Data Science and Sharing Team
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.