xcoll 0.6.0__py3-none-any.whl → 0.6.2__py3-none-any.whl

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Files changed (82) hide show
  1. xcoll/general.py +1 -1
  2. xcoll/plot.py +1 -1
  3. {xcoll-0.6.0.dist-info → xcoll-0.6.2.dist-info}/METADATA +5 -4
  4. xcoll-0.6.2.dist-info/RECORD +61 -0
  5. {xcoll-0.6.0.dist-info → xcoll-0.6.2.dist-info}/WHEEL +1 -1
  6. xcoll/scattering_routines/fluka/flukaio/.git +0 -1
  7. xcoll/scattering_routines/fluka/flukaio/.gitignore +0 -2
  8. xcoll/scattering_routines/fluka/flukaio/CMakeLists.txt +0 -18
  9. xcoll/scattering_routines/fluka/flukaio/ComponentMakefile +0 -192
  10. xcoll/scattering_routines/fluka/flukaio/Makefile +0 -144
  11. xcoll/scattering_routines/fluka/flukaio/README +0 -26
  12. xcoll/scattering_routines/fluka/flukaio/doc/Doxyfile +0 -1551
  13. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO.asciidoc +0 -1054
  14. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO.epub +0 -0
  15. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO.html +0 -1607
  16. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO.pdf +0 -0
  17. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO__1.png +0 -0
  18. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO__2.png +0 -0
  19. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO__3.png +0 -0
  20. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO__4.png +0 -0
  21. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO__5.png +0 -0
  22. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO__6.png +0 -0
  23. xcoll/scattering_routines/fluka/flukaio/doc/FlukaIO__7.png +0 -0
  24. xcoll/scattering_routines/fluka/flukaio/doc/Makefile +0 -8
  25. xcoll/scattering_routines/fluka/flukaio/doc/docbook.xsl +0 -1690
  26. xcoll/scattering_routines/fluka/flukaio/include/Connection.h +0 -79
  27. xcoll/scattering_routines/fluka/flukaio/include/FlukaIO.h +0 -58
  28. xcoll/scattering_routines/fluka/flukaio/include/FlukaIOServer.h +0 -33
  29. xcoll/scattering_routines/fluka/flukaio/include/FortranFlukaIO.h +0 -277
  30. xcoll/scattering_routines/fluka/flukaio/include/Message.h +0 -89
  31. xcoll/scattering_routines/fluka/flukaio/include/ParticleInfo.h +0 -76
  32. xcoll/scattering_routines/fluka/flukaio/lib/libFlukaIO64.a +0 -0
  33. xcoll/scattering_routines/fluka/flukaio/lib/libFlukaIO64.so +0 -0
  34. xcoll/scattering_routines/fluka/flukaio/samples/ClientTest.c +0 -156
  35. xcoll/scattering_routines/fluka/flukaio/samples/ServerTest.c +0 -123
  36. xcoll/scattering_routines/fluka/flukaio/samples/fclient.f +0 -149
  37. xcoll/scattering_routines/fluka/flukaio/samples/fserver.f +0 -118
  38. xcoll/scattering_routines/fluka/flukaio/src/Connection.c +0 -264
  39. xcoll/scattering_routines/fluka/flukaio/src/Connection.d +0 -69
  40. xcoll/scattering_routines/fluka/flukaio/src/Connection.o +0 -0
  41. xcoll/scattering_routines/fluka/flukaio/src/FlukaIO.c +0 -211
  42. xcoll/scattering_routines/fluka/flukaio/src/FlukaIO.d +0 -46
  43. xcoll/scattering_routines/fluka/flukaio/src/FlukaIO.o +0 -0
  44. xcoll/scattering_routines/fluka/flukaio/src/FlukaIOHandshake.c +0 -45
  45. xcoll/scattering_routines/fluka/flukaio/src/FlukaIOHandshake.d +0 -29
  46. xcoll/scattering_routines/fluka/flukaio/src/FlukaIOHandshake.h +0 -17
  47. xcoll/scattering_routines/fluka/flukaio/src/FlukaIOHandshake.o +0 -0
  48. xcoll/scattering_routines/fluka/flukaio/src/FlukaIOServer.c +0 -84
  49. xcoll/scattering_routines/fluka/flukaio/src/FlukaIOServer.d +0 -70
  50. xcoll/scattering_routines/fluka/flukaio/src/FlukaIOServer.o +0 -0
  51. xcoll/scattering_routines/fluka/flukaio/src/FlukaIOServer_private.h +0 -22
  52. xcoll/scattering_routines/fluka/flukaio/src/FlukaIO_private.h +0 -16
  53. xcoll/scattering_routines/fluka/flukaio/src/FortranFlukaIO.c +0 -533
  54. xcoll/scattering_routines/fluka/flukaio/src/FortranFlukaIO.d +0 -40
  55. xcoll/scattering_routines/fluka/flukaio/src/FortranFlukaIO.o +0 -0
  56. xcoll/scattering_routines/fluka/flukaio/src/NetIO.c +0 -304
  57. xcoll/scattering_routines/fluka/flukaio/src/NetIO.d +0 -66
  58. xcoll/scattering_routines/fluka/flukaio/src/NetIO.h +0 -30
  59. xcoll/scattering_routines/fluka/flukaio/src/NetIO.o +0 -0
  60. xcoll/scattering_routines/fluka/flukaio/src/tags +0 -167
  61. xcoll/scattering_routines/fluka/flukaio/tests/AllTests.cpp +0 -8
  62. xcoll/scattering_routines/fluka/flukaio/tests/CommonTest.h +0 -10
  63. xcoll/scattering_routines/fluka/flukaio/tests/ConnectionTest.cpp +0 -99
  64. xcoll/scattering_routines/fluka/flukaio/tests/FlukaIOServerTest.cpp +0 -104
  65. xcoll/scattering_routines/fluka/flukaio/tests/FlukaIOTest.cpp +0 -439
  66. xcoll/scattering_routines/fluka/flukaio/tests/FortranFlukaIOTest.cpp +0 -682
  67. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeConnection.c +0 -19
  68. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeConnection.h +0 -16
  69. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeFlukaIO.c +0 -74
  70. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeFlukaIO.h +0 -50
  71. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeFlukaIOHandshake.c +0 -16
  72. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeFlukaIOHandshake.h +0 -20
  73. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeFlukaIOServer.c +0 -12
  74. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeFlukaIOServer.h +0 -18
  75. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeFortranFlukaIO.h +0 -19
  76. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeNetIO.c +0 -80
  77. xcoll/scattering_routines/fluka/flukaio/tests/fakes/FakeNetIO.h +0 -35
  78. xcoll-0.6.0.dist-info/LICENSE +0 -201
  79. xcoll-0.6.0.dist-info/NOTICE +0 -2
  80. xcoll-0.6.0.dist-info/RECORD +0 -135
  81. /LICENSE → /xcoll-0.6.2.dist-info/LICENSE +0 -0
  82. /NOTICE → /xcoll-0.6.2.dist-info/NOTICE +0 -0
xcoll/scattering_routines/fluka/flukaio/src/Connection.c DELETED
@@ -1,264 +0,0 @@
1
- #include <stdlib.h>
2
- #include <stdio.h>
3
- #include <string.h>
4
- #include <unistd.h>
5
- #include <errno.h>
6
- #include <assert.h>
7
-
8
- #include "Connection.h"
9
- #include "NetIO.h"
10
-
11
-
12
- /**
13
- * Connect to a host and port
14
- * @return -1 if error
15
- */
16
- int connection_connect(flukaio_connection_t *conn, const char *host, int port) {
17
- conn->fd = conn->connect(host, port);
18
- return conn->fd;
19
- }
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-
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- /**
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- * Creates a connection object given a socket (file descriptor)
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- * @return returns a connection, NULL if memory error
24
- */
25
- flukaio_connection_t *connection_create(int fd)
26
- {
27
- flukaio_connection_t *conn = (flukaio_connection_t *)malloc(sizeof(flukaio_connection_t));
28
- if (conn)
29
- {
30
- conn->fd = fd;
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-
32
- conn->in_buffer_size = sizeof(conn->in_buffer);
33
- conn->out_buffer_size = sizeof(conn->out_buffer);
34
- conn->in_buffer_len = 0;
35
- conn->in_buffer_start = 0;
36
- conn->in_buffer_end = 0;
37
- conn->out_buffer_len = 0;
38
- conn->read_timeout = DEFAULT_READ_TIMEOUT;
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- conn->write_timeout = DEFAULT_WRITE_TIMEOUT;
40
-
41
- conn->connect = &netio_connect;
42
- conn->read = &netio_read;
43
- conn->write = &netio_write;
44
- conn->can_read = &netio_can_read;
45
- conn->can_write = &netio_can_write;
46
- conn->set_nonblocking = &netio_set_nonblocking;
47
- conn->set_nodelay = &netio_set_nodelay;
48
- }
49
-
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- return conn;
51
- }
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-
53
- /**
54
- * Closes connection and frees structures
55
- */
56
- void connection_destroy(flukaio_connection_t *conn)
57
- {
58
- if (conn == NULL)
59
- return;
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-
61
- if(conn->fd != -1)
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- {
63
- shutdown(conn->fd, SHUT_RDWR);
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- close(conn->fd);
65
- }
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- free(conn);
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- }
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-
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- /**
70
- * Send message through connection
71
- * @return bytes sent, -1 if error
72
- */
73
- ssize_t connection_push_message(flukaio_connection_t * conn,
74
- unsigned char type, const void *data, size_t datalen)
75
- {
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- if (conn == NULL)
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- return -1;
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-
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- size_t out_buffer_space = conn->out_buffer_size - conn->out_buffer_len;
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- ssize_t n = connection_write_message_bin(
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- type, data, datalen,
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- conn->out_buffer + conn->out_buffer_len,
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- out_buffer_space);
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-
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- if (n <= 0) return n;
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- conn->out_buffer_len += n;
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-
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- return n;
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- }
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-
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- /**
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- * Write message in buffer
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- * @return number of bytes written, -1 if error
94
- */
95
- ssize_t connection_write_message_bin(
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- const unsigned char type,
97
- const void *data, const size_t datalen,
98
- void *buf, const size_t buflen)
99
- {
100
- if (buf == NULL) return -2;
101
- if (data == NULL && datalen > 0) return -3;
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- if (buflen < (datalen + MSG_HEADER_LEN)) return -4;
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-
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- void *bufp = buf;
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- flukaio_message_t msg;
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-
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- msg.size = MSG_HEADER_LEN + datalen;
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- msg.type = type;
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-
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- memcpy(bufp, &msg, MSG_HEADER_LEN);
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- memcpy(bufp+MSG_HEADER_LEN, data, datalen);
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-
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- return msg.size;
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- }
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-
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- /**
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- * Returns a message if inmediately available
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- * Stores read message in msg
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- * @return bytes read, -1 if error (disconnect, etc.)
120
- */
121
- ssize_t connection_receive_message(flukaio_connection_t *conn, flukaio_message_t *msg)
122
- {
123
- if (conn == NULL)
124
- return -1;
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-
126
- ssize_t len = connection_read_message_from(msg, conn->in_buffer + conn->in_buffer_start, conn->in_buffer_len);
127
-
128
- if (len > 0)
129
- {
130
- conn->in_buffer_len -= len;
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- conn->in_buffer_start += len;
132
- }
133
-
134
- return len;
135
- }
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-
137
-
138
- /**
139
- * Write/transmit output buffer, blocks until done
140
- * @return number of bytes written, -1 if connection error (disconnect, etc.)
141
- */
142
- ssize_t connection_write(flukaio_connection_t *conn)
143
- {
144
- if (conn == NULL)
145
- return -1;
146
-
147
- ssize_t n;
148
- n = conn->write(conn->fd, conn->out_buffer, conn->out_buffer_len);
149
- // write always sends the full buffer or reports an error
150
- if (n > 0)
151
- conn->out_buffer_len -= n;
152
- return n;
153
- }
154
-
155
- /**
156
- * Write all contents of connection
157
- * exactly the same as connection_write
158
- */
159
- ssize_t connection_flush(flukaio_connection_t *conn)
160
- {
161
- return connection_write(conn);
162
- }
163
-
164
- /**
165
- * Read from network and store in input buffer
166
- * @return number of read bytes, -1 if connection error (disconnect, etc.)
167
- */
168
- ssize_t connection_read(flukaio_connection_t *conn)
169
- {
170
- if (conn == NULL)
171
- return -1;
172
-
173
- if (conn->in_buffer_start > (conn->in_buffer_size>>1)) {
174
- memmove(conn->in_buffer, conn->in_buffer + conn->in_buffer_start, conn->in_buffer_len);
175
- conn->in_buffer_start = 0;
176
- conn->in_buffer_end = conn->in_buffer_len;
177
- }
178
- ssize_t n = conn->read(conn->fd,
179
- conn->in_buffer + conn->in_buffer_end,
180
- conn->in_buffer_size-conn->in_buffer_end);
181
- if (n > 0) {
182
- conn->in_buffer_end += n;
183
- conn->in_buffer_len += n;
184
- }
185
- return n;
186
- }
187
-
188
- /**
189
- * @return 1 if can read, -1 on error
190
- */
191
- int connection_can_read(flukaio_connection_t *conn)
192
- {
193
- if (conn == NULL)
194
- return -1;
195
-
196
- return conn->can_read(conn->fd, conn->read_timeout, 0);
197
- }
198
-
199
- /**
200
- * @return 1 if can write, -1 on error
201
- */
202
- int connection_can_write(flukaio_connection_t *conn)
203
- {
204
- if (conn == NULL)
205
- return -1;
206
-
207
- return conn->can_write(conn->fd, conn->write_timeout, 0);
208
- }
209
-
210
- /**
211
- * Sets the read timeout for this specific connection
212
- * @param time to wait in seconds
213
- * @return set timeout, -1 if error
214
- */
215
- int connection_set_read_timeout(flukaio_connection_t *conn, long timeout)
216
- {
217
- if (conn == NULL)
218
- return -1;
219
-
220
- return conn->read_timeout = timeout;
221
- }
222
-
223
- int connection_set_write_timeout(flukaio_connection_t *conn, long timeout)
224
- {
225
- if (conn == NULL)
226
- return -1;
227
-
228
- return conn->write_timeout = timeout;
229
- }
230
-
231
- /**
232
- * read message from a given buffer
233
- * Stores read message in msg
234
- * @return bytes read, -1 if error (disconnect, etc.)
235
- */
236
- inline ssize_t connection_read_message_from(flukaio_message_t *msg, const void *buffer, size_t buffer_len)
237
- {
238
- flukaio_message_t *mymsg = msg;
239
- flukaio_message_t m;
240
-
241
- if (mymsg == NULL)
242
- mymsg = &m;
243
-
244
- if (buffer == NULL)
245
- return -1;
246
-
247
- if (buffer_len < MSG_HEADER_LEN)
248
- return -1;
249
-
250
- memcpy(mymsg, buffer, MSG_HEADER_LEN);
251
-
252
- // Full data not ready
253
- if (buffer_len < mymsg->size)
254
- return -1;
255
-
256
- if (msg != NULL)
257
- {
258
- memcpy(msg, buffer, mymsg->size);
259
- }
260
-
261
- return mymsg->size;
262
-
263
- }
264
-
xcoll/scattering_routines/fluka/flukaio/src/Connection.d DELETED
@@ -1,69 +0,0 @@
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- src/Connection.o src/Connection.d: src/Connection.c \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/stdlib.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/features.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/wordsize.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/gnu/stubs.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/gnu/stubs-64.h \
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- /apps/miniforge3/envs/xcoll/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/stddef.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/waitflags.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/waitstatus.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/endian.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/endian.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/byteswap.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/types.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/types.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/typesizes.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/time.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/select.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/select.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/sigset.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/time.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/sysmacros.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/pthreadtypes.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/alloca.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/stdio.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/libio.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/_G_config.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/wchar.h \
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- /apps/miniforge3/envs/xcoll/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/stdarg.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/stdio_lim.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/sys_errlist.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/string.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/xlocale.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/unistd.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/posix_opt.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/environments.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/confname.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/getopt.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/errno.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/errno.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/linux/errno.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/asm/errno.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/asm-generic/errno.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/asm-generic/errno-base.h \
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- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/assert.h \
46
- include/Connection.h include/Message.h \
47
- /apps/miniforge3/envs/xcoll/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/stdint.h \
48
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/stdint.h \
49
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/wchar.h \
50
- include/ParticleInfo.h src/NetIO.h \
51
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/socket.h \
52
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/uio.h \
53
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/uio.h \
54
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/socket.h \
55
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/sockaddr.h \
56
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/asm/socket.h \
57
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/asm-generic/socket.h \
58
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/asm/sockios.h \
59
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/asm-generic/sockios.h \
60
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/arpa/inet.h \
61
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/netinet/in.h \
62
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/in.h \
63
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/fcntl.h \
64
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/fcntl.h \
65
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/stat.h \
66
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/netinet/tcp.h \
67
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/netdb.h \
68
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/rpc/netdb.h \
69
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/netdb.h
xcoll/scattering_routines/fluka/flukaio/src/FlukaIO.c DELETED
@@ -1,211 +0,0 @@
1
- #include "FlukaIO_private.h"
2
-
3
- flukaio_connection_t* flukaio_conn() {
4
- return connection_create(-1);
5
- } // flukaio_conn
6
-
7
- /**
8
- * Blocks until a message is read.
9
- * Stores read message in msg
10
- * @return number bytes read, -1 if error (timeout, disconnect, etc.)
11
- */
12
- ssize_t flukaio_wait_message(flukaio_connection_t *conn, flukaio_message_t *msg) {
13
- ssize_t n;
14
- int retries = 0;
15
-
16
- if (conn == NULL)
17
- return -100;
18
-
19
- while (retries < 2 && (n = flukaio_receive_message(conn, msg)) < 0) {
20
- // blocks waiting for data
21
- int retval = connection_can_read(conn);
22
-
23
- if (retval <= 0)
24
- return -101;
25
-
26
- retries++;
27
- }
28
- return n;
29
- } // flukaio_wait_message
30
-
31
- /**
32
- * Returns a message if inmediately available
33
- * Stores read message in msg
34
- * @return bytes read, -1 if error (disconnect, etc.)
35
- */
36
- ssize_t flukaio_receive_message(flukaio_connection_t *conn, flukaio_message_t *msg)
37
- {
38
- if (conn == NULL)
39
- return -102;
40
-
41
- if (conn->in_buffer_len <= conn->in_buffer_size * FLUKAIO_IN_CACHE)
42
- connection_read(conn);
43
-
44
- int n = connection_receive_message(conn, msg);
45
- if (n > 0) {
46
- if (msg) {
47
- switch(msg->type) {
48
- case N_PART:
49
- case N_EOB:
50
- case N_IPT:
51
- case N_END:
52
- case N_CONF:
53
- case N_HSK:
54
- case N_INT:
55
- case N_DBLE:
56
- break;
57
- default:
58
- msg->type = N_ERR;
59
- return -103;
60
- break;
61
- }
62
- }
63
- return n;
64
- }
65
-
66
- if (msg) msg->type = N_ERR;
67
- return -104;
68
- } // flukaio_receive_message
69
-
70
- /**
71
- * Send particle
72
- * @param part particle to send
73
- * @return bytes sent, -1 if error
74
- */
75
- ssize_t flukaio_send_particle(flukaio_connection_t *conn, const particle_info_t *part)
76
- {
77
- ssize_t n = connection_push_message(conn, N_PART, part, sizeof(particle_info_t));
78
-
79
- if (n < 0) return n;
80
-
81
- if(conn->out_buffer_len >= conn->out_buffer_size * FLUKAIO_OUT_CACHE)
82
- connection_flush(conn);
83
-
84
- return n;
85
-
86
- } // flukaio_send_particle
87
-
88
- /**
89
- * Send End Of Batch
90
- * @return bytes sent, -1 if error
91
- */
92
- ssize_t flukaio_send_eob(flukaio_connection_t *conn)
93
- {
94
- ssize_t n = connection_push_message(conn, N_EOB, NULL, 0);
95
- connection_flush(conn);
96
- return n;
97
- } // flukaio_send_eob
98
-
99
- /**
100
- * Send Insertion Point
101
- * @param turn Current turn number
102
- * @param ipt Insertion point number
103
- * @return bytes sent, -1 if error
104
- */
105
- ssize_t flukaio_send_ipt(flukaio_connection_t *conn, uint32_t turn, uint16_t ipt)
106
- {
107
- flukaio_ipt_data_t data;
108
- data.turn = turn;
109
- data.ipt = ipt;
110
-
111
- ssize_t n = connection_push_message(conn, N_IPT, &data, sizeof(data));
112
- return n;
113
- } // flukaio_send_ipt
114
-
115
- /**
116
- * Send Handshake
117
- */
118
- ssize_t flukaio_send_hsk(flukaio_connection_t *conn, uint16_t major, uint16_t minor, uint32_t key)
119
- {
120
- flukaio_hsk_data_t data;
121
- data.minor = minor;
122
- data.major = major;
123
- data.key = key;
124
-
125
- ssize_t n = connection_push_message(conn, N_HSK, &data, sizeof(data));
126
- connection_flush(conn);
127
- return n;
128
- } // flukaio_send_hsk
129
-
130
- /**
131
- * Send End Of Computation
132
- * @return bytes sent, -1 if error
133
- */
134
- ssize_t flukaio_send_eoc(flukaio_connection_t *conn)
135
- {
136
- ssize_t n = connection_push_message(conn, N_END, NULL, 0);
137
- connection_flush(conn);
138
- return n;
139
- } // flukaio_send_eoc
140
-
141
- /**
142
- * Send an int message
143
- * @param conn connection structrure
144
- * @param id message id
145
- * @param value integer value to send
146
- * @return bytes sent, -1 if error
147
- */
148
- ssize_t flukaio_send_int(flukaio_connection_t *conn, const int id, const int value)
149
- {
150
- flukaio_int_data_t data;
151
-
152
- data.id = id;
153
- data.value = value;
154
-
155
- ssize_t n = connection_push_message(conn, N_INT, &data, sizeof(data));
156
- connection_flush(conn);
157
- return n;
158
- } // flukaio_send_int
159
-
160
- /**
161
- * Send a double message
162
- * @param conn connection structrure
163
- * @param id message id
164
- * @param value double value to send
165
- * @return bytes sent, -1 if error
166
- */
167
- ssize_t flukaio_send_double(flukaio_connection_t *conn, const int id, const double value)
168
- {
169
- flukaio_dble_data_t data;
170
-
171
- data.id = id;
172
- data.value = value;
173
-
174
- ssize_t n = connection_push_message(conn, N_DBLE, &data, sizeof(data));
175
- connection_flush(conn);
176
- return n;
177
- } // flukaio_send_double
178
-
179
- /**
180
- * Send maximum Number of particles
181
- * @return bytes sent, -1 if error
182
- */
183
- ssize_t flukaio_send_npart(flukaio_connection_t *conn, const uint32_t npart)
184
- {
185
- return flukaio_send_int(conn, N_NPART, npart);
186
- } // flukaio_send_npart
187
-
188
- /**
189
- * Helper routine, connect to server at host and port
190
- * @return 0 if success, -1 if error
191
- */
192
- flukaio_connection_t *flukaio_connect(flukaio_connection_t *conn, const char *host, int port) {
193
- if (connection_connect(conn, host, port) < 0) return conn;
194
-
195
- if (flukaio_handshake_client(conn) < 0) {
196
- // Handshake failed
197
- errno = EPROTO;
198
- flukaio_disconnect(conn);
199
- return NULL;
200
- }
201
-
202
- return conn;
203
- } // flukaio_connect
204
-
205
- /**
206
- * Disconnect from server
207
- * @param conn Connection object
208
- */
209
- void flukaio_disconnect(flukaio_connection_t *conn) {
210
- connection_destroy(conn);
211
- } // flukaio_disconnect
xcoll/scattering_routines/fluka/flukaio/src/FlukaIO.d DELETED
@@ -1,46 +0,0 @@
1
- src/FlukaIO.o src/FlukaIO.d: src/FlukaIO.c src/FlukaIO_private.h \
2
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/assert.h \
3
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/features.h \
4
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h \
5
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/wordsize.h \
6
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/gnu/stubs.h \
7
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/gnu/stubs-64.h \
8
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/stdio.h \
9
- /apps/miniforge3/envs/xcoll/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/stddef.h \
10
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/types.h \
11
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/typesizes.h \
12
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/libio.h \
13
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/_G_config.h \
14
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/wchar.h \
15
- /apps/miniforge3/envs/xcoll/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/stdarg.h \
16
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/stdio_lim.h \
17
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/sys_errlist.h \
18
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/string.h \
19
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/xlocale.h \
20
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/errno.h \
21
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/errno.h \
22
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/linux/errno.h \
23
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/asm/errno.h \
24
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/asm-generic/errno.h \
25
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/asm-generic/errno-base.h \
26
- include/Connection.h \
27
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/stdlib.h \
28
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/waitflags.h \
29
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/waitstatus.h \
30
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/endian.h \
31
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/endian.h \
32
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/byteswap.h \
33
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/types.h \
34
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/time.h \
35
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/select.h \
36
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/select.h \
37
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/sigset.h \
38
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/time.h \
39
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/sysmacros.h \
40
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/pthreadtypes.h \
41
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/alloca.h \
42
- include/Message.h \
43
- /apps/miniforge3/envs/xcoll/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/stdint.h \
44
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/stdint.h \
45
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/wchar.h \
46
- include/ParticleInfo.h include/FlukaIO.h include/Connection.h
xcoll/scattering_routines/fluka/flukaio/src/FlukaIOHandshake.c DELETED
@@ -1,45 +0,0 @@
1
- #include "FlukaIOHandshake.h"
2
-
3
- int (*flukaio_handshake_client)(flukaio_connection_t * conn) = &impl_flukaio_handshake_client;
4
- int (*flukaio_handshake_server)(flukaio_connection_t * conn) = &impl_flukaio_handshake_server;
5
-
6
- /**
7
- * Handshake the server (used by the client)
8
- * checks if server implements a compatible version of the protocol
9
- * @param conn Connection object
10
- * @return true if versions are compatible, otherwise it disconnects
11
- */
12
- int impl_flukaio_handshake_client(flukaio_connection_t * conn) {
13
- uint32_t key = 123141;
14
- ssize_t n = flukaio_send_hsk(conn, FLUKAIO_MAJOR_VERSION, FLUKAIO_MINOR_VERSION, key);
15
- if (n < 0) return -1;
16
-
17
- // Redundant check
18
- flukaio_message_t msg;
19
- n = flukaio_wait_message(conn, &msg);
20
- if (msg.type != N_HSK) return -1;
21
- if (msg.data.hsk.major != FLUKAIO_MAJOR_VERSION) return -1;
22
- if (msg.data.hsk.key != key) return -1;
23
- return 0;
24
- }
25
-
26
- /**
27
- * Handshake the client (used by the server)
28
- * checks if client implements a compatible version of the protocol
29
- * @param conn Connection object
30
- * @return true if versions are compatible, otherwise it disconnects
31
- */
32
- int impl_flukaio_handshake_server(flukaio_connection_t * conn) {
33
- flukaio_message_t msg;
34
- ssize_t n = flukaio_wait_message(conn, &msg);
35
-
36
- if (n < 0) return -1;
37
- if (msg.type != N_HSK) return -1;
38
- if (msg.data.hsk.major != FLUKAIO_MAJOR_VERSION) return -1;
39
-
40
- // Reply with our version plus the original key
41
- n = flukaio_send_hsk(conn, FLUKAIO_MAJOR_VERSION, FLUKAIO_MINOR_VERSION, msg.data.hsk.key);
42
- if (n < 0) return -1;
43
- return 0;
44
- }
45
-
xcoll/scattering_routines/fluka/flukaio/src/FlukaIOHandshake.d DELETED
@@ -1,29 +0,0 @@
1
- src/FlukaIOHandshake.o src/FlukaIOHandshake.d: src/FlukaIOHandshake.c \
2
- src/FlukaIOHandshake.h include/FlukaIO.h \
3
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/stdlib.h \
4
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/features.h \
5
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h \
6
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/wordsize.h \
7
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/gnu/stubs.h \
8
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/gnu/stubs-64.h \
9
- /apps/miniforge3/envs/xcoll/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/stddef.h \
10
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/waitflags.h \
11
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/waitstatus.h \
12
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/endian.h \
13
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/endian.h \
14
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/byteswap.h \
15
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/types.h \
16
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/types.h \
17
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/typesizes.h \
18
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/time.h \
19
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/select.h \
20
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/select.h \
21
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/sigset.h \
22
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/time.h \
23
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/sys/sysmacros.h \
24
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/pthreadtypes.h \
25
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/alloca.h \
26
- /apps/miniforge3/envs/xcoll/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/stdint.h \
27
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/stdint.h \
28
- /apps/miniforge3/envs/xcoll/x86_64-conda-linux-gnu/sysroot/usr/include/bits/wchar.h \
29
- include/Message.h include/ParticleInfo.h include/Connection.h