xcoll 0.5.11__py3-none-any.whl → 0.6.0__py3-none-any.whl

xcoll/scattering_routines/everest/multiple_coulomb_scattering.h

@@ -107,7 +107,7 @@ double* scamcs(LocalParticle* part, double x0, double xp0, double s) {
 
 
 /*gpufun*/
-void mcs(EverestData restrict everest, LocalParticle* part, double length, double p, int edge_check){
+void mcs(EverestData restrict everest, LocalParticle* part, double length, double pc, int edge_check){
     InteractionRecordData record = everest->coll->record;
     RecordIndex record_index     = everest->coll->record_index;
     int8_t sc = everest->coll->record_scatterings;
@@ -118,7 +118,7 @@ void mcs(EverestData restrict everest, LocalParticle* part, double length, doubl
 
     double const radl = everest->coll->radl;
     double s;
-    double theta = 13.6e-3/p;
+    double theta = 13.6e-3/pc;
     double h   = 0.001;
     double dh  = 0.0001;
     double bn0 = 0.4330127019;

xcoll/scattering_routines/everest/nuclear_interaction.h

@@ -27,23 +27,29 @@ double nuclear_interaction(EverestData restrict everest, LocalParticle* part, do
         ichoix += 1;
     }
 
-    //Do the interaction
+    // Do the interaction
+    // Scattered angle is cos theta = 1 + t / (2p^2) for elastic scattering
+    //    from Mandelstam t = (p1-p3)^2) = 2m^2 - 2E1E3 + 2p1.p3
+    //    if elastic, p1 = p3, and hence t = 2m^2 - 2(m^2 + p^2) + 2p^2 cos(theta)
     int64_t i_slot = -1;
     if (ichoix==1) {
         if (sc) i_slot = InteractionRecordData_log(record, record_index, part, XC_ABSORBED);
         LocalParticle_set_state(part, XC_LOST_ON_EVEREST_COLL);
 
     } else {
-        double teta;
-        if (ichoix==2) { // p-n elastic
+        double sqrt_t_p;
+        if (ichoix==2) {
+            // p-n elastic
             if (sc) i_slot = InteractionRecordData_log(record, record_index, part, XC_PN_ELASTIC);
-            teta  = sqrt(RandomExponential_generate(part)/everest->bn)/pc;
+            sqrt_t_p = sqrt(RandomExponential_generate(part)/everest->bn)/pc;
 
-        } else if (ichoix==3) { // p-p elastic
+        } else if (ichoix==3) {
+            // p-p elastic
             if (sc) i_slot = InteractionRecordData_log(record, record_index, part, XC_PP_ELASTIC);
-            teta  = sqrt(RandomExponential_generate(part)/everest->bpp)/pc;
+            sqrt_t_p = sqrt(RandomExponential_generate(part)/everest->bpp)/pc;
 
-        } else if (ichoix==4) { // Single diffractive
+        } else if (ichoix==4) {
+            // Single diffractive
             if (sc) i_slot = InteractionRecordData_log(record, record_index, part, XC_SINGLE_DIFFRACTIVE);
             double xm2 = exp(RandomUniform_generate(part)*everest->xln15s);
             double bsd;
@@ -56,25 +62,35 @@ double nuclear_interaction(EverestData restrict everest, LocalParticle* part, do
             }
             double pc_in = pc;
             pc = pc*(1 - xm2/everest->ecmsq);
-            // Corrected 1/p into 1/sqrt(pp')
-            teta = sqrt(RandomExponential_generate(part)/bsd)/sqrt(pc_in*pc);
+            if (pc <= 1.e-9 || pc != pc) {
+                // Very small (<1eV) or NaN
+                if (sc) InteractionRecordData_log(record, record_index, part, XC_ABSORBED);
+                LocalParticle_set_state(part, XC_LOST_ON_EVEREST_COLL);
+                pc = 1.e-9;
+                sqrt_t_p = 0;
+            } else {
+                // Corrected 1/p into 1/sqrt(pp')
+                sqrt_t_p = sqrt(RandomExponential_generate(part)/bsd)/sqrt(pc_in*pc);
+            }
 
-        } else { // Coulomb
+        } else {
+            // Coulomb
             if (sc) i_slot = InteractionRecordData_log(record, record_index, part, XC_COULOMB);
-            teta = sqrt(RandomRutherford_generate(everest->coll->rng, part))/pc;
+            sqrt_t_p = sqrt(RandomRutherford_generate(everest->coll->rng, part))/pc;
         }
 
-        // TODO: I am not convinced that we can just sample two independent random numbers
-        // I believe it should be tan(tx) = cos(phi) * tan(teta)    and    tan(ty) = sin(phi) * tan(teta)
-        // with phi uniformly sampled between 0 and 2 pi
-        double tx = teta*RandomNormal_generate(part);
-        double tz = teta*RandomNormal_generate(part);
+        // theta = arccos(1 + t/(2p^2))  =>  tan(theta) = sqrt( -t/p^2 * (1 + t/(4p^2)) ) / (1 + t/(2p^2))
+        // Note that in elastic scattering, t < 0, but we sampled t > 0 so we need to flip the sign
+        double tan_theta = sqrt_t_p * sqrt(1 - sqrt_t_p*sqrt_t_p/4)/(1 - sqrt_t_p*sqrt_t_p/2);
+        double alpha = 2*M_PI*RandomUniform_generate(part);
+        double tan_theta_x = tan_theta*cos(alpha);
+        double tan_theta_y = tan_theta*sin(alpha);
 
-        //Change the angles
+        // Change the angles
 #ifdef XCOLL_USE_EXACT
-        LocalParticle_add_to_exact_xp_yp(part, tx, tz);
+        LocalParticle_add_to_exact_xp_yp(part, tan_theta_x, tan_theta_y);
 #else
-        LocalParticle_add_to_xp_yp(part, tx, tz);
+        LocalParticle_add_to_xp_yp(part, tan_theta_x, tan_theta_y);
 #endif
 
         if (sc) InteractionRecordData_log_child(record, i_slot, part);

xcoll/scattering_routines/everest/properties.h

@@ -11,7 +11,7 @@
 
 
 /*gpufun*/
-void calculate_scattering(EverestData restrict everest, double p) {
+void calculate_scattering(EverestData restrict everest, double pc) {
     if (everest->coll->only_mcs){   // TODO: this should be done smarter
         return;
     }
@@ -26,7 +26,7 @@ void calculate_scattering(EverestData restrict everest, double p) {
 
     double csect[6];
 
-    everest->ecmsq = 2*XC_PROTON_MASS*1.0e-3*p;
+    everest->ecmsq = 2*XC_PROTON_MASS*1.0e-3*pc;
     double ecmsq = everest->ecmsq;
     everest->xln15s = log(0.15*ecmsq);
 
@@ -93,76 +93,7 @@ void calculate_scattering(EverestData restrict everest, double p) {
 
 
 /*gpufun*/
-void calculate_ionisation_properties(EverestData restrict everest, double pc) {
-    if (everest->coll->only_mcs){   // TODO: this should be done smarter
-        return;
-    }
-
-    // Material properties
-    double const exenergy = everest->coll->exenergy;
-    double const rho      = everest->coll->rho;
-    double const anuc     = everest->coll->anuc;
-    double const zatom    = everest->coll->zatom;
-
-    // Energy variables
-    double momentum = pc*1.0e3;   // [MeV]
-    double energy   = sqrt(pow(momentum, 2.) + pow(XC_PROTON_MASS, 2.)); // [MeV]
-    double gammar   = energy/XC_PROTON_MASS;
-    double betar    = momentum/energy;
-    double bgr      = betar*gammar;
-    double mep      = XC_ELECTRON_MASS/XC_PROTON_MASS;  // Electron/proton
-
-    // tmax is max energy loss from kinematics
-    double tmax = 2.*XC_ELECTRON_MASS*pow(bgr, 2.)/ (1. + 2.*gammar*mep + pow(mep, 2.));  // [MeV]
-    double plen = sqrt(rho*zatom/anuc)*28.816e-6; // [MeV]
-
-    everest->energy_loss = 0.5*log(2.*XC_ELECTRON_MASS*bgr*bgr*tmax/pow(exenergy, 2.)) + 0.5;
-    everest->energy_loss -= pow(betar, 2.);
-    everest->energy_loss -= log(plen/exenergy);
-    everest->energy_loss -= log(bgr);
-    everest->energy_loss *= XC_BETHE_BLOCH*zatom/(anuc* pow(betar, 2.))*rho*1.0e-1; // [GeV/m]
-
-    everest->energy_loss_tail = 0.5*log(2*XC_ELECTRON_MASS*bgr*bgr*tmax/pow(exenergy, 2.)) + 0.5;
-    everest->energy_loss_tail -= pow(betar, 2.);
-    everest->energy_loss_tail -= log(plen/exenergy);
-    everest->energy_loss_tail -= log(bgr);
-    everest->energy_loss_tail += pow(tmax, 2.)/(8.*pow(energy, 2.));
-    everest->energy_loss_tail *= XC_BETHE_BLOCH*zatom/(anuc*pow(betar, 2.))*rho*1.0e-1; // [GeV/m]
-
-    double Tt = everest->energy_loss*1.0e3 + XC_BETHE_BLOCH*zatom*4.0e2*rho/(anuc*pow(betar, 2.)); // [MeV/m]
-
-    // Calculate different coefficients for terms in dz (length) to get the tail probability
-    double const prob_factor = rho*1.e2*XC_BETHE_BLOCH*zatom/(anuc*pow(betar, 2.));
-    everest->prob_tail_c1 = prob_factor * 0.5 / Tt;
-    everest->prob_tail_c2 = prob_factor * (
-                        tmax/(4.*pow(energy, 2.)) - 0.5/tmax
-                        - log(tmax/Tt)*pow(betar,2.)/(2.*tmax)
-                   );  // * dz
-    everest->prob_tail_c3 = prob_factor * pow(betar,2.)/(2.*tmax);  // * dz * log(dz)
-    everest->prob_tail_c4 = -prob_factor * Tt/(4.*pow(energy, 2.));  // * dz * dz
-}
-
-
-/*gpufun*/
-double calcionloss(EverestData restrict everest, LocalParticle* part, double length) {
-
-#ifdef XCOLL_REFINE_ENERGY
-    calculate_ionisation_properties(everest, pc);
-#endif
-
-    double prob_tail = everest->prob_tail_c1 + everest->prob_tail_c2 * length
-                     + everest->prob_tail_c3 * length * log(length) + everest->prob_tail_c4 * length * length;
-
-    if (RandomUniform_generate(part) < prob_tail) {
-        return everest->energy_loss_tail;
-    } else {
-        return everest->energy_loss;
-    }
-}
-
-
-/*gpufun*/
-double calculate_dechanneling_length(EverestData restrict everest, double pc) {
+double calculate_dechannelling_length(EverestData restrict everest, double pc) {
     // Material properties
     double const exenergy = everest->coll->exenergy;
 
@@ -171,7 +102,7 @@ double calculate_dechanneling_length(EverestData restrict everest, double pc) {
     double energy   = sqrt(pow(momentum, 2.) + pow(XC_PROTON_MASS, 2.)); // [MeV]
     double gammar   = energy/XC_PROTON_MASS;
 
-    double const_dech = 256.0/(9.*pow(M_PI, 2.)) / (log(2.*XC_ELECTRON_MASS*gammar/exenergy) - 1.);
+    double const_dech = 256.0/(9.*pow(M_PI, 2.)) / (log(2.*XC_ELECTRON_MASS*gammar/exenergy/1000) - 1.);
     const_dech       *= (XC_SCREENING*XC_PLANE_DISTANCE)/(XC_CRADE*XC_ELECTRON_MASS)*1.0e3; // [m/GeV]
     return const_dech;
 }

xcoll/xaux.py

@@ -0,0 +1,73 @@
+# copyright ############################### #
+# This file is part of the Xcoll Package.   #
+# Copyright (c) CERN, 2025.                 #
+# ######################################### #
+
+# Tenporary file that defines xaux tools - to be used until xaux is in main Xsuite release cycle
+
+import os
+import base64
+import shutil
+import inspect
+import functools
+import numpy as np
+from pathlib import PosixPath
+
+
+class FsPath(PosixPath):
+    def copy_to(self, other, **kwargs):
+        if self.is_dir():
+            shutil.copytree(self, other / self.name, dirs_exist_ok=True)
+        else:
+            shutil.copy(self, other)
+    def move_to(self, other, **kwargs):
+        shutil.move(self, other)
+    def rmtree(self, *args, **kwargs):
+        shutil.rmtree(self, *args, **kwargs)
+
+
+
+def ranID(*, length=12, size=1, only_alphanumeric=False):
+    """Base64 encoded random ID.
+    Args:
+        length (int): Length of the ID string, rounded up to
+            the closest multiple of 4. Default 12.
+        size (int): Number of random IDs to generate.
+            Default 1.
+        only_alphanumeric (bool): If True, only alphanumeric
+            characters are used. Default False.
+    Returns:
+        str: Random ID string.
+    """
+    if length < 1:
+        raise ValueError("Length must be greater than 0!")
+    if size < 1:
+        raise ValueError("Size must be greater than 0!")
+    if size > 1:
+        return [ranID(length=length, only_alphanumeric=only_alphanumeric)
+                for _ in range(size)]
+    length = int(np.ceil(length/4))
+    if only_alphanumeric:
+        ran = ''
+        for _ in range(length):
+            while True:
+                this_ran = ranID(length=4, only_alphanumeric=False)
+                if this_ran.isalnum():
+                    break
+            ran += this_ran
+        return ran
+    else:
+        random_bytes = os.urandom(3*length)
+        return base64.urlsafe_b64encode(random_bytes).decode('utf-8')
+
+
+
+def count_required_arguments(func):
+    i = 0
+    sig = inspect.signature(func)
+    for param in sig.parameters.values():
+        if (param.kind == inspect.Parameter.POSITIONAL_ONLY \
+        or param.kind == inspect.Parameter.POSITIONAL_OR_KEYWORD) \
+        and param.default == inspect.Parameter.empty:
+            i += 1
+    return i

{xcoll-0.5.11.dist-info → xcoll-0.6.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: xcoll
-Version: 0.5.11
+Version: 0.6.0
 Summary: Xsuite collimation package
 Home-page: https://github.com/xsuite/xcoll
 License: Apache 2.0
@@ -18,10 +18,10 @@ Provides-Extra: tests
 Requires-Dist: numpy (>=1.0)
 Requires-Dist: pandas (>=1.4)
 Requires-Dist: ruamel-yaml (>=0.17.31,<0.18.0) ; extra == "tests"
-Requires-Dist: xdeps (>=0.8.1)
-Requires-Dist: xobjects (>=0.4.5)
-Requires-Dist: xpart (>=0.19.3)
-Requires-Dist: xtrack (>=0.70.3)
+Requires-Dist: xdeps (>=0.10.5)
+Requires-Dist: xobjects (>=0.5.0)
+Requires-Dist: xpart (>=0.23.0)
+Requires-Dist: xtrack (>=0.84.5)
 Project-URL: Repository, https://github.com/xsuite/xcoll
 Description-Content-Type: text/markdown
 

xcoll-0.6.0.dist-info/RECORD

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xcoll/_manager.py

@@ -1,22 +0,0 @@
-# copyright ############################### #
-# This file is part of the Xcoll package.   #
-# Copyright (c) CERN, 2024.                 #
-# ######################################### #
-
-
-class CollimatorManager:
-
-    def __init__(self, **kwargs):
-        raise ValueError("`CollimatorManager` is deprecated. Use `CollimatorDatabase` instead.")
-
-    @classmethod
-    def from_yaml(cls, file, **kwargs):
-        raise ValueError("`CollimatorManager` is deprecated. Use `CollimatorDatabase` instead.")
-
-    @classmethod
-    def from_json(cls, file, **kwargs):
-        raise ValueError("`CollimatorManager` is deprecated. Use `CollimatorDatabase` instead.")
-
-    @classmethod
-    def from_dict(cls, file, **kwargs):
-        raise ValueError("`CollimatorManager` is deprecated. Use `CollimatorDatabase` instead.")

xcoll/headers/particle_states.h

@@ -1,25 +0,0 @@
-// copyright ############################### #
-// This file is part of the Xcoll package.   #
-// Copyright (c) CERN, 2024.                 #
-// ######################################### #
-
-#ifndef XCOLL_STATES_H
-#define XCOLL_STATES_H
-
-#define  XC_LOST_ON_EVEREST_BLOCK   -330
-#define  XC_LOST_ON_EVEREST_COLL    -331
-#define  XC_LOST_ON_EVEREST_CRYSTAL -332
-#define  XC_LOST_ON_FLUKA_BLOCK     -333
-#define  XC_LOST_ON_FLUKA           -334
-#define  XC_LOST_ON_FLUKA_CRYSTAL   -335
-#define  XC_LOST_ON_GEANT4_BLOCK    -336
-#define  XC_LOST_ON_GEANT4          -337
-#define  XC_LOST_ON_GEANT4_CRYSTAL  -338
-#define  XC_LOST_ON_ABSORBER        -340
-
-#define  XC_ERR_INVALID_TRACK       -390
-#define  XC_ERR_NOT_IMPLEMENTED     -391
-#define  XC_ERR_INVALID_XOFIELD     -392
-#define  XC_ERR                     -399
-
-#endif /* XCOLL_STATES_H */

xcoll/install.py

@@ -1,35 +0,0 @@
-# copyright ############################### #
-# This file is part of the Xcoll package.   #
-# Copyright (c) CERN, 2024.                 #
-# ######################################### #
-
-from warnings import warn
-
-# This file is deprecated and will be removed in the future.
-
-
-def install_elements(line, names, elements, *, at_s=None, apertures=None, need_apertures=False, s_tol=1.e-6):
-    warn("The function xcoll.install_elements() is deprecated and will be removed in the future. "
-       + "Please use line.collimators.install() instead.", FutureWarning)
-    line.collimators.install(names=names, elements=elements, at_s=at_s, apertures=apertures,
-                             need_apertures=need_apertures, s_tol=s_tol)
-
-def check_element_position(line, name, s_start, s_end, at_s, length=None, s_tol=1.e-6):
-    warn("The function xcoll.check_element_position() is deprecated and will be removed "
-       + "in the future. Please use line.collimators.check_position() instead.", FutureWarning)
-    return line.collimators.check_position(name, s_start, s_end, at_s, length=length, s_tol=s_tol)
-
-def get_apertures_at_s(tab, s, s_tol=1.e-6):
-    warn("The function xcoll.get_apertures_at_s() is deprecated and will be removed in the future. "
-       + "Please use line.collimators.get_apertures_at_s() instead.", FutureWarning)
-    return get_apertures_at_s(s, s_tol=s_tol)
-
-def get_aperture_for_element(line, name, s_start, s_end, aperture=None, tab=None, s_tol=1.e-6):
-    warn("The function xcoll.get_aperture_for_element() is deprecated and will be removed in the future. "
-       + "Please use line.collimators.get_aperture() instead.", FutureWarning)
-    return line.get_aperture(name, s_start, s_end, aperture=aperture, tab=tab, s_tol=s_tol)
-
-def prepare_space_for_element(line, name, s_start, s_end, tab=None, s_tol=1.e-6):
-    warn("The function xcoll.prepare_space_for_element() is deprecated and will be removed in the future. "
-       + "Please use line.collimators.prepare_space() instead.", FutureWarning)
-    return line.collimators.prepare_space(name, s_start, s_end, tab=tab, s_tol=s_tol)

xcoll/scattering_routines/geant4/collimasim/.git

@@ -1 +0,0 @@
-gitdir: ../../../../.git/modules/xcoll/scattering_routines/geant4/collimasim

xcoll/scattering_routines/geant4/collimasim/.gitignore

@@ -1,12 +0,0 @@
-*.pyc
-*.egg-info/
-*.so
-*.o
-*~
-#*#
-.#*
-.DS_Store
-.idea
-.vscode
-build
-cmake-build*

xcoll/scattering_routines/geant4/collimasim/.gitmodules

@@ -1,3 +0,0 @@
-[submodule "pybind11"]
-	path = lib/pybind11
-	url = https://github.com/pybind/pybind11.git

xcoll/scattering_routines/geant4/collimasim/CMakeLists.txt

@@ -1,26 +0,0 @@
-cmake_minimum_required(VERSION 3.17)
-SET(CMAKE_BUILD_TYPE Debug)
-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -g -O0")
-
-project(g4interface)
-
-add_subdirectory(lib/pybind11)
-
-set(SOURCE_DIR "src/collimasim")
-
-# The headers are in the source directory
-include_directories(${SOURCE_DIR})
-
-set(SOURCES ${SOURCE_DIR}/BDSPyATInterface.cpp
-            ${SOURCE_DIR}/BDSXtrackInterface.cpp
-            ${SOURCE_DIR}/BDSPyATInterface.hh
-            ${SOURCE_DIR}/BDSXtrackInterface.hh
-            ${SOURCE_DIR}/bindings.cpp)
-
-find_package(BDSIM REQUIRED HINTS $ENV{BDSIM})
-
-pybind11_add_module(g4interface ${SOURCES} "${SOURCE_DIR}/bindings.cpp")
-
-
-target_link_libraries(g4interface PRIVATE ${BDSIM_LIBRARIES})
-target_include_directories(g4interface PUBLIC ${BDSIM_INCLUDE_DIR})

xcoll/scattering_routines/geant4/collimasim/README.md

@@ -1,21 +0,0 @@
-# Collimasim
-
-Collimasim provides Python bindings to BDSIM (Geant4) in order to enable collimation studies in pure tracking codes
-
-## Requiremends
- - BDSIM installed on the system
- - python3
- - CMake >3.17
-
-## Installation
-
-To isntall use:
-
-```bash
-git clone --recurse-submodules https://gitlab.cern.ch/anabramo/collimasim.git
-python -m pip install --user --editable ./
-```
-
-## Usage
-
-See tests/test.py for an example of how to use

xcoll/scattering_routines/geant4/collimasim/docs/Makefile

@@ -1,20 +0,0 @@
-# Minimal makefile for Sphinx documentation
-#
-
-# You can set these variables from the command line, and also
-# from the environment for the first two.
-SPHINXOPTS    ?=
-SPHINXBUILD   ?= sphinx-build
-SOURCEDIR     = source
-BUILDDIR      = build
-
-# Put it first so that "make" without argument is like "make help".
-help:
-	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
-
-.PHONY: help Makefile
-
-# Catch-all target: route all unknown targets to Sphinx using the new
-# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
-%: Makefile
-	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)