xcoll 0.4.0__py3-none-any.whl → 0.5.0__py3-none-any.whl

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pybind11_tests.h

@@ -0,0 +1,85 @@
+#pragma once
+
+#include <pybind11/pybind11.h>
+#include <pybind11/eval.h>
+
+#if defined(_MSC_VER) && _MSC_VER < 1910
+// We get some really long type names here which causes MSVC 2015 to emit warnings
+#    pragma warning(                                                                              \
+        disable : 4503) // warning C4503: decorated name length exceeded, name was truncated
+#endif
+
+namespace py = pybind11;
+using namespace pybind11::literals;
+
+class test_initializer {
+    using Initializer = void (*)(py::module_ &);
+
+public:
+    explicit test_initializer(Initializer init);
+    test_initializer(const char *submodule_name, Initializer init);
+};
+
+#define TEST_SUBMODULE(name, variable)                                                            \
+    void test_submodule_##name(py::module_ &);                                                    \
+    test_initializer name(#name, test_submodule_##name);                                          \
+    void test_submodule_##name(py::module_ &(variable))
+
+/// Dummy type which is not exported anywhere -- something to trigger a conversion error
+struct UnregisteredType { };
+
+/// A user-defined type which is exported and can be used by any test
+class UserType {
+public:
+    UserType() = default;
+    explicit UserType(int i) : i(i) { }
+
+    int value() const { return i; }
+    void set(int set) { i = set; }
+
+private:
+    int i = -1;
+};
+
+/// Like UserType, but increments `value` on copy for quick reference vs. copy tests
+class IncType : public UserType {
+public:
+    using UserType::UserType;
+    IncType() = default;
+    IncType(const IncType &other) : IncType(other.value() + 1) { }
+    IncType(IncType &&) = delete;
+    IncType &operator=(const IncType &) = delete;
+    IncType &operator=(IncType &&) = delete;
+};
+
+/// A simple union for basic testing
+union IntFloat {
+    int i;
+    float f;
+};
+
+/// Custom cast-only type that casts to a string "rvalue" or "lvalue" depending on the cast context.
+/// Used to test recursive casters (e.g. std::tuple, stl containers).
+struct RValueCaster {};
+PYBIND11_NAMESPACE_BEGIN(pybind11)
+PYBIND11_NAMESPACE_BEGIN(detail)
+template<> class type_caster<RValueCaster> {
+public:
+    PYBIND11_TYPE_CASTER(RValueCaster, _("RValueCaster"));
+    static handle cast(RValueCaster &&, return_value_policy, handle) { return py::str("rvalue").release(); }
+    static handle cast(const RValueCaster &, return_value_policy, handle) { return py::str("lvalue").release(); }
+};
+PYBIND11_NAMESPACE_END(detail)
+PYBIND11_NAMESPACE_END(pybind11)
+
+template <typename F>
+void ignoreOldStyleInitWarnings(F &&body) {
+    py::exec(R"(
+    message = "pybind11-bound class '.+' is using an old-style placement-new '(?:__init__|__setstate__)' which has been deprecated"
+
+    import warnings
+    with warnings.catch_warnings():
+        warnings.filterwarnings("ignore", message=message, category=FutureWarning)
+        body()
+    )", py::dict(py::arg("body") = py::cpp_function(body)));
+}

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pytest.ini

@@ -0,0 +1,19 @@
+[pytest]
+minversion = 3.1
+norecursedirs = test_* extra_*
+xfail_strict = True
+addopts =
+    # show summary of skipped tests
+    -rs
+    # capture only Python print and C++ py::print, but not C output (low-level Python errors)
+    --capture=sys
+filterwarnings =
+    # make warnings into errors but ignore certain third-party extension issues
+    error
+    # somehow, some DeprecationWarnings do not get turned into errors
+    always::DeprecationWarning
+    # importing scipy submodules on some version of Python
+    ignore::ImportWarning
+    # bogus numpy ABI warning (see numpy/#432)
+    ignore:.*numpy.dtype size changed.*:RuntimeWarning
+    ignore:.*numpy.ufunc size changed.*:RuntimeWarning

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/requirements.txt

@@ -0,0 +1,12 @@
+--extra-index-url https://antocuni.github.io/pypy-wheels/manylinux2010/
+numpy==1.16.6; python_version<"3.6" and sys_platform!="win32"
+numpy==1.18.0; platform_python_implementation=="PyPy" and sys_platform=="darwin" and python_version>="3.6"
+numpy==1.19.3; (platform_python_implementation!="PyPy" or sys_platform=="linux") and python_version=="3.6"
+numpy==1.21.2; (platform_python_implementation!="PyPy" or sys_platform=="linux") and python_version>="3.7" and python_version<"3.10"
+numpy==1.21.2; platform_python_implementation!="PyPy" and sys_platform=="linux" and python_version=="3.10"
+pytest==4.6.9; python_version<"3.5"
+pytest==6.1.2; python_version=="3.5"
+pytest==6.2.4; python_version>="3.6"
+pytest-timeout
+scipy==1.2.3; (platform_python_implementation!="PyPy" or sys_platform=="linux") and python_version<"3.6"
+scipy==1.5.4; (platform_python_implementation!="PyPy" or sys_platform=="linux") and python_version>="3.6" and python_version<"3.10"

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_async.cpp

@@ -0,0 +1,26 @@
+/*
+    tests/test_async.cpp -- __await__ support
+
+    Copyright (c) 2019 Google Inc.
+
+    All rights reserved. Use of this source code is governed by a
+    BSD-style license that can be found in the LICENSE file.
+*/
+
+#include "pybind11_tests.h"
+
+TEST_SUBMODULE(async_module, m) {
+    struct DoesNotSupportAsync {};
+    py::class_<DoesNotSupportAsync>(m, "DoesNotSupportAsync")
+        .def(py::init<>());
+    struct SupportsAsync {};
+    py::class_<SupportsAsync>(m, "SupportsAsync")
+        .def(py::init<>())
+        .def("__await__", [](const SupportsAsync& self) -> py::object {
+            static_cast<void>(self);
+            py::object loop = py::module_::import("asyncio.events").attr("get_event_loop")();
+            py::object f = loop.attr("create_future")();
+            f.attr("set_result")(5);
+            return f.attr("__await__")();
+        });
+}

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_async.py

@@ -0,0 +1,25 @@
+# -*- coding: utf-8 -*-
+import pytest
+
+asyncio = pytest.importorskip("asyncio")
+m = pytest.importorskip("pybind11_tests.async_module")
+
+
+@pytest.fixture
+def event_loop():
+    loop = asyncio.new_event_loop()
+    yield loop
+    loop.close()
+
+
+async def get_await_result(x):
+    return await x
+
+
+def test_await(event_loop):
+    assert 5 == event_loop.run_until_complete(get_await_result(m.SupportsAsync()))
+
+
+def test_await_missing(event_loop):
+    with pytest.raises(TypeError):
+        event_loop.run_until_complete(get_await_result(m.DoesNotSupportAsync()))

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_buffers.cpp

@@ -0,0 +1,216 @@
+/*
+    tests/test_buffers.cpp -- supporting Pythons' buffer protocol
+
+    Copyright (c) 2016 Wenzel Jakob <wenzel.jakob@epfl.ch>
+
+    All rights reserved. Use of this source code is governed by a
+    BSD-style license that can be found in the LICENSE file.
+*/
+
+#include "pybind11_tests.h"
+#include "constructor_stats.h"
+#include <pybind11/stl.h>
+
+TEST_SUBMODULE(buffers, m) {
+    // test_from_python / test_to_python:
+    class Matrix {
+    public:
+        Matrix(py::ssize_t rows, py::ssize_t cols) : m_rows(rows), m_cols(cols) {
+            print_created(this, std::to_string(m_rows) + "x" + std::to_string(m_cols) + " matrix");
+            m_data = new float[(size_t) (rows*cols)];
+            memset(m_data, 0, sizeof(float) * (size_t) (rows * cols));
+        }
+
+        Matrix(const Matrix &s) : m_rows(s.m_rows), m_cols(s.m_cols) {
+            print_copy_created(this, std::to_string(m_rows) + "x" + std::to_string(m_cols) + " matrix");
+            m_data = new float[(size_t) (m_rows * m_cols)];
+            memcpy(m_data, s.m_data, sizeof(float) * (size_t) (m_rows * m_cols));
+        }
+
+        Matrix(Matrix &&s) noexcept : m_rows(s.m_rows), m_cols(s.m_cols), m_data(s.m_data) {
+            print_move_created(this);
+            s.m_rows = 0;
+            s.m_cols = 0;
+            s.m_data = nullptr;
+        }
+
+        ~Matrix() {
+            print_destroyed(this, std::to_string(m_rows) + "x" + std::to_string(m_cols) + " matrix");
+            delete[] m_data;
+        }
+
+        Matrix &operator=(const Matrix &s) {
+            if (this == &s) {
+                return *this;
+            }
+            print_copy_assigned(this,
+                                std::to_string(m_rows) + "x" + std::to_string(m_cols) + " matrix");
+            delete[] m_data;
+            m_rows = s.m_rows;
+            m_cols = s.m_cols;
+            m_data = new float[(size_t) (m_rows * m_cols)];
+            memcpy(m_data, s.m_data, sizeof(float) * (size_t) (m_rows * m_cols));
+            return *this;
+        }
+
+        Matrix &operator=(Matrix &&s) noexcept {
+            print_move_assigned(this, std::to_string(m_rows) + "x" + std::to_string(m_cols) + " matrix");
+            if (&s != this) {
+                delete[] m_data;
+                m_rows = s.m_rows; m_cols = s.m_cols; m_data = s.m_data;
+                s.m_rows = 0; s.m_cols = 0; s.m_data = nullptr;
+            }
+            return *this;
+        }
+
+        float operator()(py::ssize_t i, py::ssize_t j) const {
+            return m_data[(size_t) (i*m_cols + j)];
+        }
+
+        float &operator()(py::ssize_t i, py::ssize_t j) {
+            return m_data[(size_t) (i*m_cols + j)];
+        }
+
+        float *data() { return m_data; }
+
+        py::ssize_t rows() const { return m_rows; }
+        py::ssize_t cols() const { return m_cols; }
+    private:
+        py::ssize_t m_rows;
+        py::ssize_t m_cols;
+        float *m_data;
+    };
+    py::class_<Matrix>(m, "Matrix", py::buffer_protocol())
+        .def(py::init<py::ssize_t, py::ssize_t>())
+        /// Construct from a buffer
+        .def(py::init([](const py::buffer &b) {
+            py::buffer_info info = b.request();
+            if (info.format != py::format_descriptor<float>::format() || info.ndim != 2)
+                throw std::runtime_error("Incompatible buffer format!");
+
+            auto v = new Matrix(info.shape[0], info.shape[1]);
+            memcpy(v->data(), info.ptr, sizeof(float) * (size_t) (v->rows() * v->cols()));
+            return v;
+        }))
+
+        .def("rows", &Matrix::rows)
+        .def("cols", &Matrix::cols)
+
+        /// Bare bones interface
+        .def("__getitem__",
+             [](const Matrix &m, std::pair<py::ssize_t, py::ssize_t> i) {
+                 if (i.first >= m.rows() || i.second >= m.cols())
+                     throw py::index_error();
+                 return m(i.first, i.second);
+             })
+        .def("__setitem__",
+             [](Matrix &m, std::pair<py::ssize_t, py::ssize_t> i, float v) {
+                 if (i.first >= m.rows() || i.second >= m.cols())
+                     throw py::index_error();
+                 m(i.first, i.second) = v;
+             })
+        /// Provide buffer access
+        .def_buffer([](Matrix &m) -> py::buffer_info {
+            return py::buffer_info(
+                m.data(),                               /* Pointer to buffer */
+                { m.rows(), m.cols() },                 /* Buffer dimensions */
+                { sizeof(float) * size_t(m.cols()),     /* Strides (in bytes) for each index */
+                  sizeof(float) }
+            );
+        });
+
+    // test_inherited_protocol
+    class SquareMatrix : public Matrix {
+    public:
+        explicit SquareMatrix(py::ssize_t n) : Matrix(n, n) {}
+    };
+    // Derived classes inherit the buffer protocol and the buffer access function
+    py::class_<SquareMatrix, Matrix>(m, "SquareMatrix")
+        .def(py::init<py::ssize_t>());
+
+
+    // test_pointer_to_member_fn
+    // Tests that passing a pointer to member to the base class works in
+    // the derived class.
+    struct Buffer {
+        int32_t value = 0;
+
+        py::buffer_info get_buffer_info() {
+            return py::buffer_info(&value, sizeof(value),
+                                   py::format_descriptor<int32_t>::format(), 1);
+        }
+    };
+    py::class_<Buffer>(m, "Buffer", py::buffer_protocol())
+        .def(py::init<>())
+        .def_readwrite("value", &Buffer::value)
+        .def_buffer(&Buffer::get_buffer_info);
+
+
+    class ConstBuffer {
+        std::unique_ptr<int32_t> value;
+
+    public:
+        int32_t get_value() const { return *value; }
+        void set_value(int32_t v) { *value = v; }
+
+        py::buffer_info get_buffer_info() const {
+            return py::buffer_info(value.get(), sizeof(*value),
+                                   py::format_descriptor<int32_t>::format(), 1);
+        }
+
+        ConstBuffer() : value(new int32_t{0}) {}
+    };
+    py::class_<ConstBuffer>(m, "ConstBuffer", py::buffer_protocol())
+        .def(py::init<>())
+        .def_property("value", &ConstBuffer::get_value, &ConstBuffer::set_value)
+        .def_buffer(&ConstBuffer::get_buffer_info);
+
+    struct DerivedBuffer : public Buffer { };
+    py::class_<DerivedBuffer>(m, "DerivedBuffer", py::buffer_protocol())
+        .def(py::init<>())
+        .def_readwrite("value", (int32_t DerivedBuffer::*) &DerivedBuffer::value)
+        .def_buffer(&DerivedBuffer::get_buffer_info);
+
+    struct BufferReadOnly {
+        const uint8_t value = 0;
+        explicit BufferReadOnly(uint8_t value) : value(value) {}
+
+        py::buffer_info get_buffer_info() {
+            return py::buffer_info(&value, 1);
+        }
+    };
+    py::class_<BufferReadOnly>(m, "BufferReadOnly", py::buffer_protocol())
+        .def(py::init<uint8_t>())
+        .def_buffer(&BufferReadOnly::get_buffer_info);
+
+    struct BufferReadOnlySelect {
+        uint8_t value = 0;
+        bool readonly = false;
+
+        py::buffer_info get_buffer_info() {
+            return py::buffer_info(&value, 1, readonly);
+        }
+    };
+    py::class_<BufferReadOnlySelect>(m, "BufferReadOnlySelect", py::buffer_protocol())
+        .def(py::init<>())
+        .def_readwrite("value", &BufferReadOnlySelect::value)
+        .def_readwrite("readonly", &BufferReadOnlySelect::readonly)
+        .def_buffer(&BufferReadOnlySelect::get_buffer_info);
+
+    // Expose buffer_info for testing.
+    py::class_<py::buffer_info>(m, "buffer_info")
+        .def(py::init<>())
+        .def_readonly("itemsize", &py::buffer_info::itemsize)
+        .def_readonly("size", &py::buffer_info::size)
+        .def_readonly("format", &py::buffer_info::format)
+        .def_readonly("ndim", &py::buffer_info::ndim)
+        .def_readonly("shape", &py::buffer_info::shape)
+        .def_readonly("strides", &py::buffer_info::strides)
+        .def_readonly("readonly", &py::buffer_info::readonly)
+        .def("__repr__", [](py::handle self) {
+             return py::str("itemsize={0.itemsize!r}, size={0.size!r}, format={0.format!r}, ndim={0.ndim!r}, shape={0.shape!r}, strides={0.strides!r}, readonly={0.readonly!r}").format(self);
+        })
+        ;
+
+    m.def("get_buffer_info", [](const py::buffer &buffer) { return buffer.request(); });
+}

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_buffers.py

@@ -0,0 +1,163 @@
+# -*- coding: utf-8 -*-
+import ctypes
+import io
+import struct
+
+import pytest
+
+import env
+from pybind11_tests import ConstructorStats
+from pybind11_tests import buffers as m
+
+np = pytest.importorskip("numpy")
+
+
+def test_from_python():
+    with pytest.raises(RuntimeError) as excinfo:
+        m.Matrix(np.array([1, 2, 3]))  # trying to assign a 1D array
+    assert str(excinfo.value) == "Incompatible buffer format!"
+
+    m3 = np.array([[1, 2, 3], [4, 5, 6]]).astype(np.float32)
+    m4 = m.Matrix(m3)
+
+    for i in range(m4.rows()):
+        for j in range(m4.cols()):
+            assert m3[i, j] == m4[i, j]
+
+    cstats = ConstructorStats.get(m.Matrix)
+    assert cstats.alive() == 1
+    del m3, m4
+    assert cstats.alive() == 0
+    assert cstats.values() == ["2x3 matrix"]
+    assert cstats.copy_constructions == 0
+    # assert cstats.move_constructions >= 0  # Don't invoke any
+    assert cstats.copy_assignments == 0
+    assert cstats.move_assignments == 0
+
+
+# https://foss.heptapod.net/pypy/pypy/-/issues/2444
+def test_to_python():
+    mat = m.Matrix(5, 4)
+    assert memoryview(mat).shape == (5, 4)
+
+    assert mat[2, 3] == 0
+    mat[2, 3] = 4.0
+    mat[3, 2] = 7.0
+    assert mat[2, 3] == 4
+    assert mat[3, 2] == 7
+    assert struct.unpack_from("f", mat, (3 * 4 + 2) * 4) == (7,)
+    assert struct.unpack_from("f", mat, (2 * 4 + 3) * 4) == (4,)
+
+    mat2 = np.array(mat, copy=False)
+    assert mat2.shape == (5, 4)
+    assert abs(mat2).sum() == 11
+    assert mat2[2, 3] == 4 and mat2[3, 2] == 7
+    mat2[2, 3] = 5
+    assert mat2[2, 3] == 5
+
+    cstats = ConstructorStats.get(m.Matrix)
+    assert cstats.alive() == 1
+    del mat
+    pytest.gc_collect()
+    assert cstats.alive() == 1
+    del mat2  # holds a mat reference
+    pytest.gc_collect()
+    assert cstats.alive() == 0
+    assert cstats.values() == ["5x4 matrix"]
+    assert cstats.copy_constructions == 0
+    # assert cstats.move_constructions >= 0  # Don't invoke any
+    assert cstats.copy_assignments == 0
+    assert cstats.move_assignments == 0
+
+
+def test_inherited_protocol():
+    """SquareMatrix is derived from Matrix and inherits the buffer protocol"""
+
+    matrix = m.SquareMatrix(5)
+    assert memoryview(matrix).shape == (5, 5)
+    assert np.asarray(matrix).shape == (5, 5)
+
+
+def test_pointer_to_member_fn():
+    for cls in [m.Buffer, m.ConstBuffer, m.DerivedBuffer]:
+        buf = cls()
+        buf.value = 0x12345678
+        value = struct.unpack("i", bytearray(buf))[0]
+        assert value == 0x12345678
+
+
+def test_readonly_buffer():
+    buf = m.BufferReadOnly(0x64)
+    view = memoryview(buf)
+    assert view[0] == b"d" if env.PY2 else 0x64
+    assert view.readonly
+    with pytest.raises(TypeError):
+        view[0] = b"\0" if env.PY2 else 0
+
+
+def test_selective_readonly_buffer():
+    buf = m.BufferReadOnlySelect()
+
+    memoryview(buf)[0] = b"d" if env.PY2 else 0x64
+    assert buf.value == 0x64
+
+    io.BytesIO(b"A").readinto(buf)
+    assert buf.value == ord(b"A")
+
+    buf.readonly = True
+    with pytest.raises(TypeError):
+        memoryview(buf)[0] = b"\0" if env.PY2 else 0
+    with pytest.raises(TypeError):
+        io.BytesIO(b"1").readinto(buf)
+
+
+def test_ctypes_array_1d():
+    char1d = (ctypes.c_char * 10)()
+    int1d = (ctypes.c_int * 15)()
+    long1d = (ctypes.c_long * 7)()
+
+    for carray in (char1d, int1d, long1d):
+        info = m.get_buffer_info(carray)
+        assert info.itemsize == ctypes.sizeof(carray._type_)
+        assert info.size == len(carray)
+        assert info.ndim == 1
+        assert info.shape == [info.size]
+        assert info.strides == [info.itemsize]
+        assert not info.readonly
+
+
+def test_ctypes_array_2d():
+    char2d = ((ctypes.c_char * 10) * 4)()
+    int2d = ((ctypes.c_int * 15) * 3)()
+    long2d = ((ctypes.c_long * 7) * 2)()
+
+    for carray in (char2d, int2d, long2d):
+        info = m.get_buffer_info(carray)
+        assert info.itemsize == ctypes.sizeof(carray[0]._type_)
+        assert info.size == len(carray) * len(carray[0])
+        assert info.ndim == 2
+        assert info.shape == [len(carray), len(carray[0])]
+        assert info.strides == [info.itemsize * len(carray[0]), info.itemsize]
+        assert not info.readonly
+
+
+@pytest.mark.skipif(
+    "env.PYPY and env.PY2", reason="PyPy2 bytes buffer not reported as readonly"
+)
+def test_ctypes_from_buffer():
+    test_pystr = b"0123456789"
+    for pyarray in (test_pystr, bytearray(test_pystr)):
+        pyinfo = m.get_buffer_info(pyarray)
+
+        if pyinfo.readonly:
+            cbytes = (ctypes.c_char * len(pyarray)).from_buffer_copy(pyarray)
+            cinfo = m.get_buffer_info(cbytes)
+        else:
+            cbytes = (ctypes.c_char * len(pyarray)).from_buffer(pyarray)
+            cinfo = m.get_buffer_info(cbytes)
+
+        assert cinfo.size == pyinfo.size
+        assert cinfo.ndim == pyinfo.ndim
+        assert cinfo.shape == pyinfo.shape
+        assert cinfo.strides == pyinfo.strides
+        assert not cinfo.readonly