wrfrun 0.1.8__py3-none-any.whl → 0.2.0__py3-none-any.whl

wrfrun/workspace/wrf.py

@@ -0,0 +1,165 @@
+"""
+wrfrun.workspace.wrf
+####################
+
+Functions to prepare workspace for WPS/WRF model.
+
+.. autosummary::
+    :toctree: generated/
+
+    get_wrf_workspace_path
+    prepare_wrf_workspace
+    check_wrf_workspace
+"""
+
+from os import listdir, makedirs, symlink
+from os.path import exists
+from typing import Literal
+
+from wrfrun.core import WRFRunConfig, get_wrfrun_config, set_register_func
+from wrfrun.utils import check_path, logger
+
+WORKSPACE_MODEL_WPS = ""
+WORKSPACE_MODEL_WRF = ""
+WORKSPACE_MODEL_WRFDA = ""
+
+
+def _register_wrf_workspace_uri(wrfrun_config: WRFRunConfig):
+    """
+    This function doesn't register any URI.
+
+    This is a hook to initializes some global strings.
+
+    :param wrfrun_config: ``WRFRunConfig`` instance.
+    :type wrfrun_config: WRFRunConfig
+    """
+    global WORKSPACE_MODEL_WPS, WORKSPACE_MODEL_WRF, WORKSPACE_MODEL_WRFDA
+
+    WORKSPACE_MODEL_WPS = f"{wrfrun_config.WRFRUN_WORKSPACE_MODEL}/WPS"
+    WORKSPACE_MODEL_WRF = f"{wrfrun_config.WRFRUN_WORKSPACE_MODEL}/WRF"
+    WORKSPACE_MODEL_WRFDA = f"{wrfrun_config.WRFRUN_WORKSPACE_MODEL}/WRFDA"
+
+
+set_register_func(_register_wrf_workspace_uri)
+
+
+def get_wrf_workspace_path(name: Literal["wps", "wrf", "wrfda"]) -> str:
+    """
+    Get workspace path of WRF model.
+
+    :param name: Model part name.
+    :type name: str
+    :return: Workspace path.
+    :rtype: str
+    """
+    match name:
+        case "wps":
+            return WORKSPACE_MODEL_WPS
+
+        case "wrf":
+            return WORKSPACE_MODEL_WRF
+
+        case "wrfda":
+            return WORKSPACE_MODEL_WRFDA
+
+
+def prepare_wrf_workspace(model_config: dict):
+    """
+    Initialize workspace for WPS/WRF model.
+
+    This function will check following paths,
+    and create them or delete old files inside:
+
+    1. ``$HOME/.config/wrfrun/model/WPS``
+    2. ``$HOME/.config/wrfrun/model/WRF``
+    3. ``$HOME/.config/wrfrun/model/WRFDA``
+
+    :param model_config: Model config.
+    :type model_config: dict
+    """
+    logger.info(f"Initialize workspace for WPS/WRF.")
+
+    WRFRUNConfig = get_wrfrun_config()
+
+    wps_path = model_config["wps_path"]
+    wrf_path = model_config["wrf_path"]
+    wrfda_path = model_config["wrfda_path"]
+
+    if not (wps_path and wrf_path):
+        logger.warning(f"No WPS/WRF model installation path given, skip initialization.")
+        return
+
+    if wps_path:
+        if not exists(wps_path):
+            logger.error(f"Your WPS path is wrong.")
+            raise FileNotFoundError(f"Your WPS path is wrong.")
+
+        wps_work_path = WRFRUNConfig.parse_resource_uri(WORKSPACE_MODEL_WPS)
+        check_path(wps_work_path, f"{wps_work_path}/outputs", force=True)
+
+        file_list = [x for x in listdir(wps_path) if x not in ["geogrid", "namelist.wps"]]
+        _ = [symlink(f"{wps_path}/{file}", f"{wps_work_path}/{file}") for file in file_list]
+        makedirs(f"{wps_work_path}/geogrid")
+        symlink(f"{wps_path}/geogrid/GEOGRID.TBL", f"{wps_work_path}/geogrid/GEOGRID.TBL")
+
+    if wrf_path:
+        if not exists(wrf_path):
+            logger.error(f"Your WRF path is wrong.")
+            raise FileNotFoundError(f"Your WRF path is wrong.")
+
+        wrf_work_path = WRFRUNConfig.parse_resource_uri(WORKSPACE_MODEL_WRF)
+        check_path(wrf_work_path, force=True)
+
+        file_list = [x for x in listdir(f"{wrf_path}/run") if not x.startswith("namelist")]
+        _ = [symlink(f"{wrf_path}/run/{file}", f"{wrf_work_path}/{file}") for file in file_list]
+
+    if wrfda_path:
+        if not exists(wrfda_path):
+            logger.error(f"Your WRFDA path is wrong.")
+            raise FileNotFoundError(f"Your WRFDA path is wrong.")
+
+        wrfda_work_path = WRFRUNConfig.parse_resource_uri(WORKSPACE_MODEL_WRFDA)
+        check_path(wrfda_work_path, force=True)
+
+        file_list = ["da_wrfvar.exe", "da_update_bc.exe"]
+        _ = [symlink(f"{wrfda_path}/var/build/{file}", f"{wrfda_work_path}/{file}") for file in file_list]
+
+        file_list = listdir(f"{wrfda_path}/var/run")
+        _ = [symlink(f"{wrfda_path}/var/run/{file}", f"{wrfda_work_path}/{file}") for file in file_list]
+
+        symlink(f"{wrfda_path}/run/LANDUSE.TBL", f"{wrfda_work_path}/LANDUSE.TBL")
+
+
+def check_wrf_workspace(model_config: dict) -> bool:
+    """
+    Check if WPS/WRF workspace exists.
+
+    :param model_config: Model config.
+    :type model_config: dict
+    :return: ``True`` if WPS/WRF workspace exists, ``False`` otherwise.
+    :rtype: bool
+    """
+    WRFRUNConfig = get_wrfrun_config()
+
+    wps_path = model_config["wps_path"]
+    wrf_path = model_config["wrf_path"]
+    wrfda_path = model_config["wrfda_path"]
+
+    flag = True
+
+    if wps_path:
+        wps_work_path = WRFRUNConfig.parse_resource_uri(WORKSPACE_MODEL_WPS)
+        flag = flag & exists(wps_work_path)
+
+    if wrf_path:
+        wrf_work_path = WRFRUNConfig.parse_resource_uri(WORKSPACE_MODEL_WRF)
+        flag = flag & exists(wrf_work_path)
+
+    if wrfda_path:
+        wrfda_work_path = WRFRUNConfig.parse_resource_uri(WORKSPACE_MODEL_WRFDA)
+        flag = flag & exists(wrfda_work_path)
+
+    return flag
+
+
+__all__ = ["get_wrf_workspace_path", "prepare_wrf_workspace", "check_wrf_workspace"]

{wrfrun-0.1.8.dist-info → wrfrun-0.2.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: wrfrun
-Version: 0.1.8
+Version: 0.2.0
 Summary: wrfrun is a comprehensive toolkit for managing and using WRF
 Keywords: WRF
 Author-Email: Syize <syizeliu@gmail.com>
@@ -11,7 +11,7 @@ Project-URL: repository, https://github.com/Syize/wrfrun
 Project-URL: documentation, https://wrfrun.syize.cn
 Project-URL: Bug Tracker, https://github.com/Syize/wrfrun/issues
 Requires-Python: >=3.10
-Requires-Dist: numpy<2.0.0
+Requires-Dist: numpy
 Requires-Dist: xarray
 Requires-Dist: netCDF4
 Requires-Dist: rich
@@ -24,6 +24,7 @@ Requires-Dist: wrf-python
 Requires-Dist: cfgrib
 Requires-Dist: tomli
 Requires-Dist: tomli-w
+Requires-Dist: haversine
 Description-Content-Type: text/markdown
 
 # wrfrun: A toolkit to control WRF

wrfrun-0.2.0.dist-info/RECORD

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+wrfrun-0.2.0.dist-info/RECORD,,

wrfrun-0.2.0.dist-info/entry_points.txt

@@ -0,0 +1,3 @@
+[console_scripts]
+wrfrun = wrfrun.cli:main_entry
+

wrfrun/model/wrf/_ndown.py

@@ -1,39 +0,0 @@
-from wrfrun.core import WRFRUNConfig
-from wrfrun.utils import logger
-
-
-def process_after_ndown():
-    """
-    After running ndown.exe, namelist settings are supposed to be changed,
-    so WRF can simulate a higher resolution domain according to `WRF User's Guide <https://www2.mmm.ucar.edu/wrf/users/wrf_users_guide/build/html/running_wrf.html#wrf-nesting>`_.
-    `wrfrun` provide this function to help you change these settings which have multiple values for each domain.
-    The first value will be removed to ensure the value of higher resolution domain is the first value.
-
-    :return:
-    """
-    namelist_data = WRFRUNConfig.get_namelist("wrf")
-
-    for section in namelist_data:
-        if section in ["bdy_control", "namelist_quilt"]:
-            continue
-
-        for key in namelist_data[section]:
-            if key in ["grid_id", "parent_id", "i_parent_start", "j_parent_start", "parent_grid_ratio", "parent_time_step_ratio", "eta_levels"]:
-                continue
-
-            if isinstance(namelist_data[section][key], list):
-
-                if len(namelist_data[section][key]) > 1:
-                    namelist_data[section][key] = namelist_data[section][key][1:]
-
-    namelist_data["domains"]["max_dom"] = 1
-
-    time_ratio = namelist_data["domains"]["parent_time_step_ratio"][1]
-    namelist_data["domains"]["time_step"] = namelist_data["domains"]["time_step"] // time_ratio
-
-    WRFRUNConfig.update_namelist(namelist_data, "wrf")
-
-    logger.info(f"Update namelist after running ndown.exe")
-
-
-__all__ = ["process_after_ndown"]

wrfrun/pbs.py

@@ -1,86 +0,0 @@
-from os import environ
-from os.path import exists, dirname, abspath
-
-from .core import WRFRUNConfig
-from .res import TASKSYS_PBS_TEMPLATE
-from .utils import logger
-
-
-def prepare_pbs_script(main_file_path: str):
-    """Prepare the bash script to be submitted to PBS work system.
-
-    Args:
-        main_file_path (str): The path of main Python file.
-    """
-    # check main file
-    if not exists(main_file_path):
-        logger.error(f"Wrong path of main Python file: {main_file_path}")
-        raise FileNotFoundError
-
-    # get absolute path of parent directory
-    dir_path = abspath(dirname(main_file_path))
-
-    # read log path and PBS setting from config
-    log_path = WRFRUNConfig.get_log_path()
-    PBS_setting = WRFRUNConfig.get_job_scheduler_config()
-
-    # set PBS log path
-    stdout_log_path = f"{log_path}/PBS.log"
-    stderr_log_path = f"{log_path}/PBS.log"
-
-    # set environment parameter
-    env_settings = ''
-    if len(PBS_setting["env_settings"]) != 0:
-        for key in PBS_setting["env_settings"]:
-            env_settings += f"{key}={PBS_setting['env_settings'][key]}\n"
-
-    # set command
-    exec_cmd = f"{PBS_setting['python_interpreter']} {main_file_path}"
-
-    # read template and write to file
-    pbs_template_path = WRFRUNConfig.parse_resource_uri(TASKSYS_PBS_TEMPLATE)
-    with open(f"{dir_path}/run.sh", "w") as f:
-
-        with open(pbs_template_path, "r") as f_template:
-            template = f_template.read()
-
-        template = template.format(
-            STDOUT_LOG_PATH=stdout_log_path,
-            STDERR_LOG_PATH=stderr_log_path,
-            NODE_NUM=PBS_setting["node_num"],
-            CORE_NUM=PBS_setting["core_num"],
-            ENV_SETTINGS=env_settings,
-            WORK_PATH=dir_path,
-            WORK_COMMAND=exec_cmd
-        )
-
-        f.write(template)
-
-    logger.info(
-        f"PBS script has been generated and write to file {dir_path}/run.sh. Check it and submit it to PBS system to run wrfrun.")
-
-
-def get_core_num() -> int:
-    """Read core num from config.
-
-    Returns:
-        int: Core number.
-    """
-    return WRFRUNConfig["core_num"]
-
-
-def in_pbs() -> bool:
-    """Check if we're in a PBS work.
-
-    Returns:
-        bool: True if we're in, False is we aren't.
-    """
-    # check if we're a PBS task
-    if "PBS_ENVIRONMENT" in environ:
-        # we're in a PBS task
-        return True
-    else:
-        return False
-
-
-__all__ = ["prepare_pbs_script", "get_core_num", "in_pbs"]

wrfrun/res/run.sh.template

@@ -1,16 +0,0 @@
-#!/bin/bash
-#PBS -q batch
-##PBS -q odasc
-#PBS -N py-wrfrun
-#PBS -o {STDOUT_LOG_PATH}
-#PBS -e {STDERR_LOG_PATH}
-#PBS -l nodes={NODE_NUM}:ppn={CORE_NUM}
-#PBS -l walltime=9999:00:00
-
-ulimit -s unlimited
-
-{ENV_SETTINGS}
-
-cd {WORK_PATH}
-
-{WORK_COMMAND}

wrfrun/workspace.py

@@ -1,88 +0,0 @@
-"""
-This file contains functions to interact with WRF workspace
-"""
-
-from os import listdir, makedirs, symlink
-from os.path import exists
-
-from .core import WRFRUNConfig
-from .utils import check_path, logger
-
-
-def prepare_workspace():
-    """Initialize workspace
-
-    """
-    logger.info(f"Initialize workspace...")
-
-    # extract WRF path
-    wrf_config = WRFRUNConfig.get_model_config("wrf")
-    wps_path = wrf_config["wps_path"]
-    wrf_path = wrf_config["wrf_path"]
-    wrfda_path = wrf_config["wrfda_path"]
-
-    WRFRUN_TEMP_PATH = WRFRUNConfig.parse_resource_uri(WRFRUNConfig.WRFRUN_TEMP_PATH)
-    WORK_PATH = WRFRUNConfig.parse_resource_uri(WRFRUNConfig.WRFRUN_WORKSPACE_PATH)
-    REPLAY_WORK_PATH = WRFRUNConfig.parse_resource_uri(WRFRUNConfig.WRFRUN_REPLAY_WORK_PATH)
-    WPS_WORK_PATH = WRFRUNConfig.parse_resource_uri(WRFRUNConfig.WPS_WORK_PATH)
-    WRF_WORK_PATH = WRFRUNConfig.parse_resource_uri(WRFRUNConfig.WRF_WORK_PATH)
-    WRFDA_WORK_PATH = WRFRUNConfig.parse_resource_uri(WRFRUNConfig.WRFDA_WORK_PATH)
-    output_path = WRFRUNConfig.parse_resource_uri(WRFRUNConfig.WRFRUN_OUTPUT_PATH)
-
-    # check folder
-    check_path(WRFRUN_TEMP_PATH)
-    check_path(REPLAY_WORK_PATH, force=True)
-    check_path(output_path)
-
-    if exists(wrfda_path):
-        WRFRUNConfig.USE_WRFDA = True
-
-    # create folder to run WPS, and WRF
-    # check the path
-    if not (exists(wps_path) and exists(wrf_path)):
-        logger.error(f"Your WPS or WRF path is wrong")
-        raise FileNotFoundError(f"Your WPS or WRF path is wrong")
-
-    # remove old file
-    if exists(WORK_PATH):
-        logger.info(f"Remove old files...")
-    check_path(WPS_WORK_PATH, f"{WPS_WORK_PATH}/outputs",
-               WRF_WORK_PATH, WRFDA_WORK_PATH, force=True)
-    logger.info(f"Link essential files...")
-
-    # link {wps_path}/*
-    # collect file except folder geogrid
-    file_list = [
-        x for x in listdir(wps_path) if x not in ["geogrid", "namelist.wps"]
-    ]
-    for file in file_list:
-        symlink(f"{wps_path}/{file}", f"{WPS_WORK_PATH}/{file}")
-
-    # create folder geogrid and link default GEOGRID file
-    makedirs(f"{WPS_WORK_PATH}/geogrid")
-    symlink(
-        f"{wps_path}/geogrid/GEOGRID.TBL", f"{WPS_WORK_PATH}/geogrid/GEOGRID.TBL"
-    )
-
-    # # link {wrf_path}/run/*, except namelist.input
-    file_list = [x for x in listdir(
-        f"{wrf_path}/run") if not x.startswith("namelist")]
-    for file in file_list:
-        symlink(f"{wrf_path}/run/{file}", f"{WRF_WORK_PATH}/{file}")
-
-    if WRFRUNConfig.USE_WRFDA:
-        # # link {wrfda_path}/bin/*.exe
-        file_list = ["da_wrfvar.exe", "da_update_bc.exe"]
-        for file in file_list:
-            symlink(f"{wrfda_path}/var/build/{file}", f"{WRFDA_WORK_PATH}/{file}")
-
-        # # link {wrfda_path}/var/run/*
-        file_list = listdir(f"{wrfda_path}/var/run")
-        for file in file_list:
-            symlink(f"{wrfda_path}/var/run/{file}", f"{WRFDA_WORK_PATH}/{file}")
-
-        # # link {wrfda_path}/run/LANDUSE.TBL
-        symlink(f"{wrfda_path}/run/LANDUSE.TBL", f"{WRFDA_WORK_PATH}/LANDUSE.TBL")
-
-
-__all__ = ["prepare_workspace"]

wrfrun-0.1.8.dist-info/RECORD

@@ -1,51 +0,0 @@
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