workbench 0.8.213__py3-none-any.whl → 0.8.219__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (58) hide show
  1. workbench/algorithms/dataframe/feature_space_proximity.py +168 -75
  2. workbench/algorithms/dataframe/fingerprint_proximity.py +257 -80
  3. workbench/algorithms/dataframe/projection_2d.py +38 -21
  4. workbench/algorithms/dataframe/proximity.py +75 -150
  5. workbench/algorithms/graph/light/proximity_graph.py +5 -5
  6. workbench/algorithms/models/cleanlab_model.py +382 -0
  7. workbench/algorithms/models/noise_model.py +2 -2
  8. workbench/algorithms/sql/outliers.py +3 -3
  9. workbench/api/__init__.py +3 -0
  10. workbench/api/endpoint.py +10 -5
  11. workbench/api/feature_set.py +76 -6
  12. workbench/api/meta_model.py +289 -0
  13. workbench/api/model.py +43 -4
  14. workbench/core/artifacts/endpoint_core.py +65 -117
  15. workbench/core/artifacts/feature_set_core.py +3 -3
  16. workbench/core/artifacts/model_core.py +6 -4
  17. workbench/core/pipelines/pipeline_executor.py +1 -1
  18. workbench/core/transforms/model_to_endpoint/model_to_endpoint.py +30 -10
  19. workbench/model_script_utils/model_script_utils.py +15 -11
  20. workbench/model_script_utils/pytorch_utils.py +11 -1
  21. workbench/model_scripts/chemprop/chemprop.template +147 -71
  22. workbench/model_scripts/chemprop/generated_model_script.py +151 -75
  23. workbench/model_scripts/chemprop/model_script_utils.py +15 -11
  24. workbench/model_scripts/custom_models/chem_info/fingerprints.py +87 -46
  25. workbench/model_scripts/custom_models/proximity/feature_space_proximity.py +194 -0
  26. workbench/model_scripts/custom_models/proximity/feature_space_proximity.template +6 -6
  27. workbench/model_scripts/custom_models/uq_models/feature_space_proximity.py +194 -0
  28. workbench/model_scripts/meta_model/generated_model_script.py +209 -0
  29. workbench/model_scripts/meta_model/meta_model.template +209 -0
  30. workbench/model_scripts/pytorch_model/generated_model_script.py +45 -27
  31. workbench/model_scripts/pytorch_model/model_script_utils.py +15 -11
  32. workbench/model_scripts/pytorch_model/pytorch.template +42 -24
  33. workbench/model_scripts/pytorch_model/pytorch_utils.py +11 -1
  34. workbench/model_scripts/script_generation.py +4 -0
  35. workbench/model_scripts/xgb_model/generated_model_script.py +167 -156
  36. workbench/model_scripts/xgb_model/model_script_utils.py +15 -11
  37. workbench/model_scripts/xgb_model/xgb_model.template +163 -152
  38. workbench/repl/workbench_shell.py +0 -5
  39. workbench/scripts/endpoint_test.py +2 -2
  40. workbench/scripts/meta_model_sim.py +35 -0
  41. workbench/utils/chem_utils/fingerprints.py +87 -46
  42. workbench/utils/chemprop_utils.py +23 -5
  43. workbench/utils/meta_model_simulator.py +499 -0
  44. workbench/utils/metrics_utils.py +94 -10
  45. workbench/utils/model_utils.py +91 -9
  46. workbench/utils/pytorch_utils.py +1 -1
  47. workbench/utils/shap_utils.py +1 -55
  48. workbench/web_interface/components/plugins/scatter_plot.py +4 -8
  49. {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/METADATA +2 -1
  50. {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/RECORD +54 -50
  51. {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/entry_points.txt +1 -0
  52. workbench/model_scripts/custom_models/meta_endpoints/example.py +0 -53
  53. workbench/model_scripts/custom_models/proximity/proximity.py +0 -410
  54. workbench/model_scripts/custom_models/uq_models/meta_uq.template +0 -377
  55. workbench/model_scripts/custom_models/uq_models/proximity.py +0 -410
  56. {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/WHEEL +0 -0
  57. {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/licenses/LICENSE +0 -0
  58. {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/top_level.txt +0 -0
@@ -3,10 +3,10 @@ workbench/algorithms/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hS
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  workbench/algorithms/dataframe/Readme.md,sha256=ZoCEi2BRJ4ZH0wlkFELTV_njIvYt7Wnhanuv4eoFluw,378
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  workbench/algorithms/dataframe/__init__.py,sha256=AXpwD4WYOk7odNS9vaKSO0DM-bMRuC93faq0JAltQ54,419
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  workbench/algorithms/dataframe/data_source_eda.py,sha256=WgVL6tzBCw1tznQr8RQ6daQnTxQ0-DQUiMwbjztVMSU,1606
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- workbench/algorithms/dataframe/feature_space_proximity.py,sha256=6RxzvbpLdDkHMm1D49Nv59SFcyYUj8bisd6_5EpBEGI,3515
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- workbench/algorithms/dataframe/fingerprint_proximity.py,sha256=nGxfmYQ3bfMtvs90s4p7gaY9DN4gijdDU7R6B2lRHgo,5825
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- workbench/algorithms/dataframe/projection_2d.py,sha256=zK4hc0OQrySmfcfFg8y0GxEL34uDNqvZL4OgttB9vRs,7834
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- workbench/algorithms/dataframe/proximity.py,sha256=dPTYD1N-JTIqg6iL7ak_JSouaCdfmBPjG08IRRvTLXU,15836
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+ workbench/algorithms/dataframe/feature_space_proximity.py,sha256=FYsQd5Lf5CrSWi-1Dcs_NVFN86izifxkWk1-EOvEV54,6950
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+ workbench/algorithms/dataframe/fingerprint_proximity.py,sha256=MZcWEVho7w18gLCxRUi3jIDlspI3vtymk_wUtwbAL3s,13298
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+ workbench/algorithms/dataframe/projection_2d.py,sha256=xO3hfqV8EbHnv3q1wcBz1pfip-UV65tpxU84-uhYE08,8744
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+ workbench/algorithms/dataframe/proximity.py,sha256=rjoTtZceaQmuMOwhgARFbm379JdGxqrz_kGFec-Js7A,13203
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  workbench/algorithms/dataframe/storage/aggregation.py,sha256=VuTb7A6Vh6IS5djZeItvOLnnEOlf7tzMQ8OaYIuftvU,2852
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  workbench/algorithms/dataframe/storage/feature_resolution.py,sha256=w_iLf8EFTg7Jc5laH-bsq8MEtZVqcg05W-GihCqR-r4,9450
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  workbench/algorithms/dataframe/storage/feature_spider.py,sha256=uIZ4JHIKuhpy08wBFReSrohb5DGxx8vGroHUbjPm1jE,14353
@@ -17,26 +17,28 @@ workbench/algorithms/graph/__init__.py,sha256=Hi2vBi-qw2OPLZnCu5qVTDdorRMOd3wNIt
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  workbench/algorithms/graph/heavy/Readme.md,sha256=QzefnMevGXHBtaP3umzMNn2KEdNQMvJkJNbhkrUw7QE,96
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  workbench/algorithms/graph/light/Readme.md,sha256=8kP_hRrRC6JtKtl5qyTwrV6gdO5rz6uq54c8WW1fTLg,122
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  workbench/algorithms/graph/light/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- workbench/algorithms/graph/light/proximity_graph.py,sha256=CdHQ7-Tt_Ab7KrKTsnXR-p8OoX52RiiM6zD0OS4dGK0,9631
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- workbench/algorithms/models/noise_model.py,sha256=_--Ri76OK60qcNzF34XqwWNqSsieOreVJ5PFpV1Rvpo,14346
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+ workbench/algorithms/graph/light/proximity_graph.py,sha256=X-4MCvMPiwYy0nP8ztKeF3z05fB6vA-alu58uUBp7Rk,9688
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+ workbench/algorithms/models/cleanlab_model.py,sha256=jBPuEv6hDp0nQc0aHPgbNtlXRzFzaqOU8RKTK7Go8ys,14027
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+ workbench/algorithms/models/noise_model.py,sha256=WVCKjda_-p0ovj-Ze6eKmKREO-3rJlmBiCMSldeWYf0,14384
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  workbench/algorithms/spark/Readme.md,sha256=18bPoFISlT3Ls5t1cBGb5N5Z6lOWyJupQkQxab1wcO4,615
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  workbench/algorithms/sql/Readme.md,sha256=fzm4jQ-unJWT-fp5JhIjpApYSAqHUGSiuHE0eNfbF4A,685
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  workbench/algorithms/sql/__init__.py,sha256=TbOZQwCfx6Tjc3pCCLCiM31wpCX26j5MBNQ6yG11EwY,462
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  workbench/algorithms/sql/column_stats.py,sha256=IwgddvPVITdAvUgxaK_px2IVSEX-jA-8cPIVFoVkbN8,5943
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  workbench/algorithms/sql/correlations.py,sha256=0DMgAkzIdR0cApQ_5vs4CxPSRz1qItcAToz7GAOFqzI,3935
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  workbench/algorithms/sql/descriptive_stats.py,sha256=VxSR5zQi8NmAWrJvOCO3wrmgVHYrwhenSy5Gl0AOqoo,4075
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- workbench/algorithms/sql/outliers.py,sha256=2hoilOk0gaz9pwrnGEBY2y7M-UqFED3KO_mFm_0_3ac,10645
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+ workbench/algorithms/sql/outliers.py,sha256=LbOYaE3bNR4x-aEIrA2KAX3Aq07ZowRgrW9buCeKisQ,10663
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  workbench/algorithms/sql/sample_rows.py,sha256=SRYoGb24QP_iPvOoW9bGZ95yZuseYDtyoNhilfoLu34,2688
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  workbench/algorithms/sql/value_counts.py,sha256=F-rZoLTTKv1cHYl2_tDlvWDjczy76uLTr3EMHa-WrEk,3340
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- workbench/api/__init__.py,sha256=KDKzFb4SL8AArtd9ucTkFYdCxbsBMbK1ZMkj0G2rACY,1065
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+ workbench/api/__init__.py,sha256=1JAQKD82biia4h07BRA9ytjxuJUYQqgHvkf8FwpnlVQ,1195
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  workbench/api/compound.py,sha256=kf5EaM5qjWwsZutcxqj9IC_MPnDV1uVHDMns9OA_GOo,2545
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  workbench/api/data_source.py,sha256=Ngz36YZWxFfpJbmURhM1LQPYjh5kdpZNGo6_fCRePbA,8321
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  workbench/api/df_store.py,sha256=1qSYM3Xb4MwMMTMaF3CX0hOCEzhIbnra5Deivg4cryk,3014
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- workbench/api/endpoint.py,sha256=q8KEoQ-KH0DxW4ZCKP8Mlqry5n9_QCg0QTgrPrwTp44,3724
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- workbench/api/feature_set.py,sha256=4zorGPAxcXorsckF8f7ym0FrJwziZCqFelNDUxWF8S4,8054
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+ workbench/api/endpoint.py,sha256=tvPINPv_EFwphuZ3tv09jwO6dee-DRH371ZzXrrUxfM,3897
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+ workbench/api/feature_set.py,sha256=7li_Wdpo8tPQAsxCit293I4g9FvyDi4qv82B89auM9o,10993
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  workbench/api/graph_store.py,sha256=LremJyPrQFgsHb7hxsctuCsoxx3p7TKtaY5qALHe6pc,4372
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  workbench/api/meta.py,sha256=1_9989cPvf3hd3tA-83hLijOGNnhwXAF8aZF45adeDQ,8596
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- workbench/api/model.py,sha256=Y4LXMjxaPT1wFrw86NuccHZllYAWM5w5h_OaTX0IeWQ,4047
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+ workbench/api/meta_model.py,sha256=2DpjjBSw60QPMWQ2sTu2492PrFWFMXK8hH9U13gXzi8,11226
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+ workbench/api/model.py,sha256=uU2sO7qm1wqdVhl7WVzzg79p1Z26Kf5inMhYzgmhzDw,5523
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  workbench/api/monitor.py,sha256=Cez89Uac7Tzt47FxkjoX-YDGccEhvBcxw3sZFtw4ud8,4506
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  workbench/api/pipeline.py,sha256=MSYGrDSXrRB_oQELtAlOwBfxSBTw3REAkHy5XBHau0Y,6261
@@ -56,9 +58,9 @@ workbench/core/artifacts/data_capture_core.py,sha256=q8f79rRTYiZ7T4IQRWXl8ZvPpcv
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  workbench/core/artifacts/data_source_abstract.py,sha256=5IRCzFVK-17cd4NXPMRfx99vQAmQ0WHE5jcm5RfsVTg,10619
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- workbench/core/artifacts/endpoint_core.py,sha256=qEjdbzUMeiZZHyJoGQbjCuFKjCVa89fFISnD5hfC7Yw,56787
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- workbench/core/artifacts/feature_set_core.py,sha256=wZy-02WXWmSBet5t8mWXFRdv9O4MtW3hWqJuVv7Kok0,39330
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- workbench/core/artifacts/model_core.py,sha256=LDH6wgN1521q7klkVF17t7tmueKH095B42_PlSAileo,52251
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+ workbench/core/artifacts/endpoint_core.py,sha256=fLOxgwNmbsrOpKafXN8zLCzazKdpJQZr2zanKJ14KRc,54057
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+ workbench/core/artifacts/feature_set_core.py,sha256=zR6gia7V6JeUHaKYzQRGQwF1j0Z5DBcM8oqGPS1pox4,39344
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+ workbench/core/artifacts/model_core.py,sha256=wPkpdRlxnAXMqsDtJGPotGFO146Hm7NCfYbImHwZo9c,52343
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@@ -71,7 +73,7 @@ workbench/core/cloud_platform/aws/aws_session.py,sha256=2Gc_k4Q87BBeQDgXgVR-w-qm
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- workbench/core/pipelines/pipeline_executor.py,sha256=_4vQ2wEmx-vXnDymphGo8EvWh4iRO7XeuweJ8wgjHvY,6890
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+ workbench/core/pipelines/pipeline_executor.py,sha256=HP69SWXHTXo7TrdUHa4z2cf57oBbMwL6bWj4MFepNZ8,6878
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@@ -105,7 +107,7 @@ workbench/core/transforms/features_to_features/heavy/glue/Readme.md,sha256=TuyCa
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- workbench/core/transforms/model_to_endpoint/model_to_endpoint.py,sha256=INu7q_tjkI52WA5Xhyas74LK7larIUQyvz9MlsrCYtc,7012
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+ workbench/core/transforms/model_to_endpoint/model_to_endpoint.py,sha256=a_y4IGrhj-ZtKcAYDwsnM44y1hqRhhGsGxgadxgqcaM,8028
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@@ -123,62 +125,63 @@ workbench/core/views/training_view.py,sha256=7HwhbQhDBhT3Zo_gssS-b4eueJ0h9nqqT8Y
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- workbench/model_script_utils/model_script_utils.py,sha256=9Js8bc57osH-kkreWPq09VtWeIQ7buzMqutgV63u0UI,11479
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- workbench/model_script_utils/pytorch_utils.py,sha256=ra9LS-9-u4fmRy2Zlcih6KL8LCose42mXCxdaaaf9As,13321
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- workbench/model_scripts/script_generation.py,sha256=1wbMyIN-cnuopmt8L2YG68Mn4k9vP6NPrQfNsWqjaaA,8005
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- workbench/model_scripts/chemprop/chemprop.template,sha256=3qgZCI0cIxCQKy9RxzGR_UeVPZ7fFTWNa6xD2Uq5kaY,26110
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+ workbench/model_scripts/script_generation.py,sha256=w3L2VYGnGUvBtd01BWzH38DuHKULtYsc_Xz_3_Eavvo,8258
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+ workbench/model_scripts/chemprop/chemprop.template,sha256=EF1otxEJGPKm_iZibbWBUvjWhQY0G8jnPK8d_A7OnS8,29416
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+ workbench/model_scripts/chemprop/generated_model_script.py,sha256=4WqqqkUlUSf1EEgzZk-OAFSwoif5drjwitEko0rlI38,30093
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+ workbench/model_scripts/chemprop/model_script_utils.py,sha256=rGPdjxmQUPcZNXK_8nKYQWb7IPQ5ietne7UMYRQZpMo,11841
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- workbench/model_scripts/custom_models/chem_info/fingerprints.py,sha256=Qvs8jaUwguWUq3Q3j695MY0t0Wk3BvroW-oWBwalMUo,5255
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+ workbench/model_scripts/custom_models/chem_info/fingerprints.py,sha256=ECDzjZs4wSx3ZvAQipMl2NEqI2isCWHLYBv7mp0NVgk,6939
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+ workbench/model_scripts/xgb_model/generated_model_script.py,sha256=VkgU9jXvWzTjPsq9JoIRJGKYJE-aj3-z7gTOc5f6hH4,18376
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- workbench/scripts/endpoint_test.py,sha256=G4GdQMa7KlKX7WiUSFX_OHAzDdCyf8ZbVYbZBkAPiSo,5339
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+ workbench/scripts/endpoint_test.py,sha256=RV52DZZTOD_ou-ywZjaxQ2_wqnSJqvlnHQZbvf4iM6I,5339
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+ workbench/scripts/meta_model_sim.py,sha256=6iGpInA-nH6DSjk0z63fcoL8P7icqnZmKLE5Sqyrh7E,1026
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@@ -211,7 +214,7 @@ workbench/utils/athena_utils.py,sha256=DDyLhJujzh1PfejtGU7ZzOf5hLPOgoXmi4Lrn-_AJ
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- workbench/utils/chemprop_utils.py,sha256=MHrnPS0OnHD-Yqj4KTeAUtMCETdSCkyUZpC24Pr0rV4,3954
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+ workbench/utils/chemprop_utils.py,sha256=_cy7iZ96xoDVeZGkLdXr7sMsgZjAUMjg5CHyHX6W6zY,4694
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@@ -232,8 +235,9 @@ workbench/utils/lambda_utils.py,sha256=7GhGRPyXn9o-toWb9HBGSnI8-DhK9YRkwhCSk_mNK
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- workbench/utils/metrics_utils.py,sha256=oY-EK4nAr01Xcqo150pfHGJaWZ8ESZowQVI9A5sMeXE,6177
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- workbench/utils/model_utils.py,sha256=WKG0BlTe3XnsDIzxi22tGWxPQxt202aFNc-i3AX5gJ4,16108
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+ workbench/utils/meta_model_simulator.py,sha256=fMKZoLi_VEJohNVvbZSMvZWNdUbIpGlB6Bg6mJQW33s,20630
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+ workbench/utils/metrics_utils.py,sha256=iAoKrAM4iRX8wFSjSJhfNKbbW1BqB3eI_U3wvdhUdhE,9496
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+ workbench/utils/model_utils.py,sha256=jiybuv6gGE-p2i2JEQcyAY-ffigtuzZFNvp_rHKCi3A,19284
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@@ -241,11 +245,11 @@ workbench/utils/pipeline_utils.py,sha256=yzR5tgAzz6zNqvxzZR6YqsbS7r3QDKzBXozaM_A
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- workbench/utils/pytorch_utils.py,sha256=_q4SHA0JQRKPUMwmM-lWkLN5xwQdw7Wo8XkmljflShs,2879
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+ workbench/utils/pytorch_utils.py,sha256=RoltE9-fOX2UixzaEmnxN6oJtBEKQ9Jklu0LRzYKVDY,2879
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- workbench/utils/shap_utils.py,sha256=dtjSIwSyvYSaQjjvIp5A9LGS7pr-5Vt907rvVKOrqNY,12651
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+ workbench/utils/shap_utils.py,sha256=FeFNRH5mJTbuHlpHyFJgjHcU5BU7UthJL1Gb5Gl8_zw,10590
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@@ -259,7 +263,7 @@ workbench/utils/workbench_sqs.py,sha256=RwM80z7YWwdtMaCKh7KWF8v38f7eBRU7kyC7ZhTR
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  workbench/utils/chem_utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- workbench/utils/chem_utils/fingerprints.py,sha256=Qvs8jaUwguWUq3Q3j695MY0t0Wk3BvroW-oWBwalMUo,5255
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+ workbench/utils/chem_utils/fingerprints.py,sha256=ECDzjZs4wSx3ZvAQipMl2NEqI2isCWHLYBv7mp0NVgk,6939
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  workbench/utils/chem_utils/mol_descriptors.py,sha256=c8gkHZ-8s3HJaW9zN9pnYGK7YVW8Y0xFqQ1G_ysrF2Y,18789
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@@ -293,7 +297,7 @@ workbench/web_interface/components/plugins/molecule_panel.py,sha256=xGCEI5af8F5l
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- workbench/web_interface/components/plugins/scatter_plot.py,sha256=8tYnHlgi2UnuKLoxi9-89QF8ZHFrPhpRkzBY5gzlVdo,19130
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+ workbench/web_interface/components/plugins/scatter_plot.py,sha256=p2mXBKXT25uVfU9Ps3xSx5q1dxRcL9z6tPEyhfoXQ0A,18945
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  workbench/web_interface/page_views/endpoints_page_view.py,sha256=EI3hA18pEn-mAPEzGAw0W-wM8qJR2j_8pQEJlbJCENk,2770
@@ -302,9 +306,9 @@ workbench/web_interface/page_views/main_page.py,sha256=X4-KyGTKLAdxR-Zk2niuLJB2Y
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  workbench/web_interface/page_views/pipelines_page_view.py,sha256=v2pxrIbsHBcYiblfius3JK766NZ7ciD2yPx0t3E5IJo,2656
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- workbench-0.8.213.dist-info/licenses/LICENSE,sha256=RTBoTMeEwTgEhS-n8vgQ-VUo5qig0PWVd8xFPKU6Lck,1080
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- workbench-0.8.213.dist-info/METADATA,sha256=hKbYNrdgKqm0wqivCTflFzZu0ekaU64UdTw5BBamkJc,10492
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- workbench-0.8.213.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- workbench-0.8.213.dist-info/entry_points.txt,sha256=viJ6aXRj63sBIs7avj4kFbCO2J2E7jTCrIk8U1SIc3I,511
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- workbench-0.8.213.dist-info/top_level.txt,sha256=Dhy72zTxaA_o_yRkPZx5zw-fwumnjGaeGf0hBN3jc_w,10
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- workbench-0.8.213.dist-info/RECORD,,
309
+ workbench-0.8.219.dist-info/licenses/LICENSE,sha256=RTBoTMeEwTgEhS-n8vgQ-VUo5qig0PWVd8xFPKU6Lck,1080
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+ workbench-0.8.219.dist-info/METADATA,sha256=1Sks6KYtjjg1QqIH6p4Q8d9Dazr3EfuQdcvv0wgsXgE,10525
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+ workbench-0.8.219.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ workbench-0.8.219.dist-info/entry_points.txt,sha256=t_9tY7iYku9z96qFZZtUgbWDh_nHtehXxLPLBSpAzeM,566
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+ workbench-0.8.219.dist-info/top_level.txt,sha256=Dhy72zTxaA_o_yRkPZx5zw-fwumnjGaeGf0hBN3jc_w,10
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+ workbench-0.8.219.dist-info/RECORD,,
@@ -3,6 +3,7 @@ cloud_watch = workbench.scripts.monitor_cloud_watch:main
3
3
  endpoint_test = workbench.scripts.endpoint_test:main
4
4
  glue_launcher = workbench.scripts.glue_launcher:main
5
5
  lambda_test = workbench.scripts.lambda_test:main
6
+ meta_model_sim = workbench.scripts.meta_model_sim:main
6
7
  ml_pipeline_batch = workbench.scripts.ml_pipeline_batch:main
7
8
  ml_pipeline_sqs = workbench.scripts.ml_pipeline_sqs:main
8
9
  training_test = workbench.scripts.training_test:main
@@ -1,53 +0,0 @@
1
- # Model: Meta Endpoint Example
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- # This script is a template for creating a custom meta endpoint in AWS Workbench.
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- from io import StringIO
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- import pandas as pd
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- import json
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-
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- # Workbench Bridges imports
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- try:
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- from workbench_bridges.endpoints.fast_inference import fast_inference
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- except ImportError:
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- print("workbench_bridges not found, this is fine for training...")
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-
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-
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- # Not Used: We need to define this function for SageMaker
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- def model_fn(model_dir):
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- return None
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-
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-
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- def input_fn(input_data, content_type):
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- """Parse input data and return a DataFrame."""
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- if not input_data:
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- raise ValueError("Empty input data is not supported!")
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-
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- # Decode bytes to string if necessary
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- if isinstance(input_data, bytes):
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- input_data = input_data.decode("utf-8")
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-
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- # Support CSV and JSON input formats
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- if "text/csv" in content_type:
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- return pd.read_csv(StringIO(input_data))
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- elif "application/json" in content_type:
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- return pd.DataFrame(json.loads(input_data)) # Assumes JSON array of records
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- else:
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- raise ValueError(f"{content_type} not supported!")
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-
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-
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- def output_fn(output_df, accept_type):
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- """Supports both CSV and JSON output formats."""
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- if "text/csv" in accept_type:
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- csv_output = output_df.to_csv(index=False)
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- return csv_output, "text/csv"
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- elif "application/json" in accept_type:
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- return output_df.to_json(orient="records"), "application/json" # JSON array of records (NaNs -> null)
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- else:
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- raise RuntimeError(f"{accept_type} accept type is not supported by this script.")
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-
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-
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- # Prediction function
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- def predict_fn(df, model):
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-
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- # Call inference on an endpoint
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- df = fast_inference("abalone-regression", df)
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- return df