workbench 0.8.213__py3-none-any.whl → 0.8.219__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- workbench/algorithms/dataframe/feature_space_proximity.py +168 -75
- workbench/algorithms/dataframe/fingerprint_proximity.py +257 -80
- workbench/algorithms/dataframe/projection_2d.py +38 -21
- workbench/algorithms/dataframe/proximity.py +75 -150
- workbench/algorithms/graph/light/proximity_graph.py +5 -5
- workbench/algorithms/models/cleanlab_model.py +382 -0
- workbench/algorithms/models/noise_model.py +2 -2
- workbench/algorithms/sql/outliers.py +3 -3
- workbench/api/__init__.py +3 -0
- workbench/api/endpoint.py +10 -5
- workbench/api/feature_set.py +76 -6
- workbench/api/meta_model.py +289 -0
- workbench/api/model.py +43 -4
- workbench/core/artifacts/endpoint_core.py +65 -117
- workbench/core/artifacts/feature_set_core.py +3 -3
- workbench/core/artifacts/model_core.py +6 -4
- workbench/core/pipelines/pipeline_executor.py +1 -1
- workbench/core/transforms/model_to_endpoint/model_to_endpoint.py +30 -10
- workbench/model_script_utils/model_script_utils.py +15 -11
- workbench/model_script_utils/pytorch_utils.py +11 -1
- workbench/model_scripts/chemprop/chemprop.template +147 -71
- workbench/model_scripts/chemprop/generated_model_script.py +151 -75
- workbench/model_scripts/chemprop/model_script_utils.py +15 -11
- workbench/model_scripts/custom_models/chem_info/fingerprints.py +87 -46
- workbench/model_scripts/custom_models/proximity/feature_space_proximity.py +194 -0
- workbench/model_scripts/custom_models/proximity/feature_space_proximity.template +6 -6
- workbench/model_scripts/custom_models/uq_models/feature_space_proximity.py +194 -0
- workbench/model_scripts/meta_model/generated_model_script.py +209 -0
- workbench/model_scripts/meta_model/meta_model.template +209 -0
- workbench/model_scripts/pytorch_model/generated_model_script.py +45 -27
- workbench/model_scripts/pytorch_model/model_script_utils.py +15 -11
- workbench/model_scripts/pytorch_model/pytorch.template +42 -24
- workbench/model_scripts/pytorch_model/pytorch_utils.py +11 -1
- workbench/model_scripts/script_generation.py +4 -0
- workbench/model_scripts/xgb_model/generated_model_script.py +167 -156
- workbench/model_scripts/xgb_model/model_script_utils.py +15 -11
- workbench/model_scripts/xgb_model/xgb_model.template +163 -152
- workbench/repl/workbench_shell.py +0 -5
- workbench/scripts/endpoint_test.py +2 -2
- workbench/scripts/meta_model_sim.py +35 -0
- workbench/utils/chem_utils/fingerprints.py +87 -46
- workbench/utils/chemprop_utils.py +23 -5
- workbench/utils/meta_model_simulator.py +499 -0
- workbench/utils/metrics_utils.py +94 -10
- workbench/utils/model_utils.py +91 -9
- workbench/utils/pytorch_utils.py +1 -1
- workbench/utils/shap_utils.py +1 -55
- workbench/web_interface/components/plugins/scatter_plot.py +4 -8
- {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/METADATA +2 -1
- {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/RECORD +54 -50
- {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/entry_points.txt +1 -0
- workbench/model_scripts/custom_models/meta_endpoints/example.py +0 -53
- workbench/model_scripts/custom_models/proximity/proximity.py +0 -410
- workbench/model_scripts/custom_models/uq_models/meta_uq.template +0 -377
- workbench/model_scripts/custom_models/uq_models/proximity.py +0 -410
- {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/WHEEL +0 -0
- {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/licenses/LICENSE +0 -0
- {workbench-0.8.213.dist-info → workbench-0.8.219.dist-info}/top_level.txt +0 -0
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@@ -3,10 +3,10 @@ workbench/algorithms/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hS
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workbench/algorithms/dataframe/Readme.md,sha256=ZoCEi2BRJ4ZH0wlkFELTV_njIvYt7Wnhanuv4eoFluw,378
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workbench/algorithms/dataframe/__init__.py,sha256=AXpwD4WYOk7odNS9vaKSO0DM-bMRuC93faq0JAltQ54,419
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workbench/algorithms/dataframe/data_source_eda.py,sha256=WgVL6tzBCw1tznQr8RQ6daQnTxQ0-DQUiMwbjztVMSU,1606
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workbench/algorithms/dataframe/feature_space_proximity.py,sha256=
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workbench/algorithms/dataframe/fingerprint_proximity.py,sha256=
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workbench/algorithms/dataframe/projection_2d.py,sha256=
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workbench/algorithms/dataframe/proximity.py,sha256=
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workbench/algorithms/dataframe/feature_space_proximity.py,sha256=FYsQd5Lf5CrSWi-1Dcs_NVFN86izifxkWk1-EOvEV54,6950
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workbench/algorithms/dataframe/fingerprint_proximity.py,sha256=MZcWEVho7w18gLCxRUi3jIDlspI3vtymk_wUtwbAL3s,13298
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workbench/algorithms/dataframe/projection_2d.py,sha256=xO3hfqV8EbHnv3q1wcBz1pfip-UV65tpxU84-uhYE08,8744
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workbench/algorithms/dataframe/proximity.py,sha256=rjoTtZceaQmuMOwhgARFbm379JdGxqrz_kGFec-Js7A,13203
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workbench/algorithms/dataframe/storage/aggregation.py,sha256=VuTb7A6Vh6IS5djZeItvOLnnEOlf7tzMQ8OaYIuftvU,2852
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workbench/algorithms/dataframe/storage/feature_resolution.py,sha256=w_iLf8EFTg7Jc5laH-bsq8MEtZVqcg05W-GihCqR-r4,9450
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workbench/algorithms/dataframe/storage/feature_spider.py,sha256=uIZ4JHIKuhpy08wBFReSrohb5DGxx8vGroHUbjPm1jE,14353
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@@ -17,26 +17,28 @@ workbench/algorithms/graph/__init__.py,sha256=Hi2vBi-qw2OPLZnCu5qVTDdorRMOd3wNIt
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workbench/algorithms/graph/heavy/Readme.md,sha256=QzefnMevGXHBtaP3umzMNn2KEdNQMvJkJNbhkrUw7QE,96
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workbench/algorithms/graph/light/Readme.md,sha256=8kP_hRrRC6JtKtl5qyTwrV6gdO5rz6uq54c8WW1fTLg,122
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workbench/algorithms/graph/light/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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workbench/algorithms/graph/light/proximity_graph.py,sha256=
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workbench/algorithms/models/
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workbench/algorithms/graph/light/proximity_graph.py,sha256=X-4MCvMPiwYy0nP8ztKeF3z05fB6vA-alu58uUBp7Rk,9688
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workbench/algorithms/models/cleanlab_model.py,sha256=jBPuEv6hDp0nQc0aHPgbNtlXRzFzaqOU8RKTK7Go8ys,14027
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workbench/algorithms/models/noise_model.py,sha256=WVCKjda_-p0ovj-Ze6eKmKREO-3rJlmBiCMSldeWYf0,14384
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workbench/algorithms/spark/Readme.md,sha256=18bPoFISlT3Ls5t1cBGb5N5Z6lOWyJupQkQxab1wcO4,615
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workbench/algorithms/sql/Readme.md,sha256=fzm4jQ-unJWT-fp5JhIjpApYSAqHUGSiuHE0eNfbF4A,685
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workbench/algorithms/sql/__init__.py,sha256=TbOZQwCfx6Tjc3pCCLCiM31wpCX26j5MBNQ6yG11EwY,462
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workbench/algorithms/sql/column_stats.py,sha256=IwgddvPVITdAvUgxaK_px2IVSEX-jA-8cPIVFoVkbN8,5943
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workbench/algorithms/sql/correlations.py,sha256=0DMgAkzIdR0cApQ_5vs4CxPSRz1qItcAToz7GAOFqzI,3935
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workbench/algorithms/sql/descriptive_stats.py,sha256=VxSR5zQi8NmAWrJvOCO3wrmgVHYrwhenSy5Gl0AOqoo,4075
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workbench/algorithms/sql/outliers.py,sha256=
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workbench/algorithms/sql/outliers.py,sha256=LbOYaE3bNR4x-aEIrA2KAX3Aq07ZowRgrW9buCeKisQ,10663
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workbench/algorithms/sql/sample_rows.py,sha256=SRYoGb24QP_iPvOoW9bGZ95yZuseYDtyoNhilfoLu34,2688
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workbench/algorithms/sql/value_counts.py,sha256=F-rZoLTTKv1cHYl2_tDlvWDjczy76uLTr3EMHa-WrEk,3340
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workbench/api/__init__.py,sha256=
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workbench/api/__init__.py,sha256=1JAQKD82biia4h07BRA9ytjxuJUYQqgHvkf8FwpnlVQ,1195
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workbench/api/compound.py,sha256=kf5EaM5qjWwsZutcxqj9IC_MPnDV1uVHDMns9OA_GOo,2545
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workbench/api/data_source.py,sha256=Ngz36YZWxFfpJbmURhM1LQPYjh5kdpZNGo6_fCRePbA,8321
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workbench/api/df_store.py,sha256=1qSYM3Xb4MwMMTMaF3CX0hOCEzhIbnra5Deivg4cryk,3014
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workbench/api/endpoint.py,sha256=
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workbench/api/feature_set.py,sha256=
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workbench/api/endpoint.py,sha256=tvPINPv_EFwphuZ3tv09jwO6dee-DRH371ZzXrrUxfM,3897
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workbench/api/feature_set.py,sha256=7li_Wdpo8tPQAsxCit293I4g9FvyDi4qv82B89auM9o,10993
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workbench/api/graph_store.py,sha256=LremJyPrQFgsHb7hxsctuCsoxx3p7TKtaY5qALHe6pc,4372
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workbench/api/meta.py,sha256=1_9989cPvf3hd3tA-83hLijOGNnhwXAF8aZF45adeDQ,8596
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workbench/api/
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workbench/api/meta_model.py,sha256=2DpjjBSw60QPMWQ2sTu2492PrFWFMXK8hH9U13gXzi8,11226
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workbench/api/model.py,sha256=uU2sO7qm1wqdVhl7WVzzg79p1Z26Kf5inMhYzgmhzDw,5523
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workbench/api/monitor.py,sha256=Cez89Uac7Tzt47FxkjoX-YDGccEhvBcxw3sZFtw4ud8,4506
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workbench/api/parameter_store.py,sha256=_3MmPxKiVy7_OIgCSRlUv9xbk8nuiOWiCtZgT-AxN1k,2574
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workbench/api/pipeline.py,sha256=MSYGrDSXrRB_oQELtAlOwBfxSBTw3REAkHy5XBHau0Y,6261
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workbench/core/artifacts/data_source_abstract.py,sha256=5IRCzFVK-17cd4NXPMRfx99vQAmQ0WHE5jcm5RfsVTg,10619
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workbench/core/artifacts/data_source_factory.py,sha256=YL_tA5fsgubbB3dPF6T4tO0rGgz-6oo3ge4i_YXVC-M,2380
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workbench/core/artifacts/df_store_core.py,sha256=AueNr_JvuLLu_ByE7cb3u-isH9u0Q7cMP-UCgCX-Ctg,3536
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workbench/core/artifacts/endpoint_core.py,sha256=fLOxgwNmbsrOpKafXN8zLCzazKdpJQZr2zanKJ14KRc,54057
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workbench/core/artifacts/feature_set_core.py,sha256=zR6gia7V6JeUHaKYzQRGQwF1j0Z5DBcM8oqGPS1pox4,39344
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workbench/core/artifacts/model_core.py,sha256=wPkpdRlxnAXMqsDtJGPotGFO146Hm7NCfYbImHwZo9c,52343
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workbench/core/artifacts/monitor_core.py,sha256=M307yz7tEzOEHgv-LmtVy9jKjSbM98fHW3ckmNYrwlU,27897
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workbench/core/artifacts/parameter_store_core.py,sha256=sHvjJMuybM4qdcKhH-Sx6Ur6Yn5ozA3QHwtidsnhyG8,2867
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workbench/core/cloud_platform/cloud_meta.py,sha256=-g4-LTC3D0PXb3VfaXdLR1ERijKuHdffeMK_zhD-koQ,8809
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workbench/core/cloud_platform/aws/cache_dataframe.py,sha256=VnObkVqcjg7v4fegrIkXR1j-K2AHTBpSAoriUXDe12A,2314
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workbench/core/cloud_platform/azure/README.md,sha256=ciIXZwjtOPYf9ViquFQxjLKuFwje_hZJHJ2hMQghziI,101
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workbench/core/cloud_platform/gcp/README.md,sha256=MzObe3mWQzjviKD2aXlAV9r_bU4HzTJGapWRsFn6pCU,106
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workbench/core/pipelines/pipeline_executor.py,sha256=
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workbench/core/pipelines/pipeline_executor.py,sha256=HP69SWXHTXo7TrdUHa4z2cf57oBbMwL6bWj4MFepNZ8,6878
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workbench/core/transforms/Readme.md,sha256=ncEH7DqVBoKCbu9cMeAMr3cvMpAn7pUmwDpv1E1ArGs,1432
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workbench/core/transforms/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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workbench/core/transforms/transform.py,sha256=3gWAgRs9WUcLooAoKwpsiiJUtyiANsTBsZ4iSWigx7g,5660
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workbench/core/transforms/features_to_model/features_to_model.py,sha256=Xbw20zMeeOKAueNeIWaRNQJFrw8N465qC3TkW0eGdu8,21074
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workbench/core/transforms/model_to_endpoint/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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workbench/core/transforms/model_to_endpoint/model_to_endpoint.py,sha256=a_y4IGrhj-ZtKcAYDwsnM44y1hqRhhGsGxgadxgqcaM,8028
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workbench/core/transforms/pandas_transforms/__init__.py,sha256=xL4MT8-fZ1SFqDbTLc8XyxjupHtB1YR6Ej0AC2nwd7I,894
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workbench/core/transforms/pandas_transforms/data_to_pandas.py,sha256=sJHPeuNF8Q8aQqgRnkdWkyvur5cbggdUVIwR-xF3Dlo,3621
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workbench/core/transforms/pandas_transforms/features_to_pandas.py,sha256=af6xdPt2V4zhh-SzQa_UYxdmNMzMLXbrbsznV5QoIJg,3441
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workbench-0.8.219.dist-info/RECORD,,
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@@ -3,6 +3,7 @@ cloud_watch = workbench.scripts.monitor_cloud_watch:main
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endpoint_test = workbench.scripts.endpoint_test:main
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glue_launcher = workbench.scripts.glue_launcher:main
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lambda_test = workbench.scripts.lambda_test:main
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meta_model_sim = workbench.scripts.meta_model_sim:main
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ml_pipeline_batch = workbench.scripts.ml_pipeline_batch:main
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ml_pipeline_sqs = workbench.scripts.ml_pipeline_sqs:main
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training_test = workbench.scripts.training_test:main
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@@ -1,53 +0,0 @@
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# Model: Meta Endpoint Example
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# This script is a template for creating a custom meta endpoint in AWS Workbench.
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from io import StringIO
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import pandas as pd
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import json
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# Workbench Bridges imports
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try:
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from workbench_bridges.endpoints.fast_inference import fast_inference
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except ImportError:
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print("workbench_bridges not found, this is fine for training...")
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# Not Used: We need to define this function for SageMaker
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def model_fn(model_dir):
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return None
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def input_fn(input_data, content_type):
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"""Parse input data and return a DataFrame."""
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if not input_data:
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raise ValueError("Empty input data is not supported!")
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# Decode bytes to string if necessary
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if isinstance(input_data, bytes):
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input_data = input_data.decode("utf-8")
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# Support CSV and JSON input formats
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if "text/csv" in content_type:
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return pd.read_csv(StringIO(input_data))
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elif "application/json" in content_type:
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return pd.DataFrame(json.loads(input_data)) # Assumes JSON array of records
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else:
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raise ValueError(f"{content_type} not supported!")
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def output_fn(output_df, accept_type):
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"""Supports both CSV and JSON output formats."""
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if "text/csv" in accept_type:
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csv_output = output_df.to_csv(index=False)
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return csv_output, "text/csv"
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elif "application/json" in accept_type:
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return output_df.to_json(orient="records"), "application/json" # JSON array of records (NaNs -> null)
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else:
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raise RuntimeError(f"{accept_type} accept type is not supported by this script.")
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# Prediction function
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def predict_fn(df, model):
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# Call inference on an endpoint
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df = fast_inference("abalone-regression", df)
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return df
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