workbench 0.8.162__py3-none-any.whl → 0.8.220__py3-none-any.whl
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- workbench/algorithms/dataframe/__init__.py +1 -2
- workbench/algorithms/dataframe/compound_dataset_overlap.py +321 -0
- workbench/algorithms/dataframe/feature_space_proximity.py +168 -75
- workbench/algorithms/dataframe/fingerprint_proximity.py +422 -86
- workbench/algorithms/dataframe/projection_2d.py +44 -21
- workbench/algorithms/dataframe/proximity.py +259 -305
- workbench/algorithms/graph/light/proximity_graph.py +14 -12
- workbench/algorithms/models/cleanlab_model.py +382 -0
- workbench/algorithms/models/noise_model.py +388 -0
- workbench/algorithms/sql/outliers.py +3 -3
- workbench/api/__init__.py +5 -1
- workbench/api/compound.py +1 -1
- workbench/api/df_store.py +17 -108
- workbench/api/endpoint.py +18 -5
- workbench/api/feature_set.py +121 -15
- workbench/api/meta.py +5 -2
- workbench/api/meta_model.py +289 -0
- workbench/api/model.py +55 -21
- workbench/api/monitor.py +1 -16
- workbench/api/parameter_store.py +3 -52
- workbench/cached/cached_model.py +4 -4
- workbench/core/artifacts/__init__.py +11 -2
- workbench/core/artifacts/artifact.py +16 -8
- workbench/core/artifacts/data_capture_core.py +355 -0
- workbench/core/artifacts/df_store_core.py +114 -0
- workbench/core/artifacts/endpoint_core.py +382 -253
- workbench/core/artifacts/feature_set_core.py +249 -45
- workbench/core/artifacts/model_core.py +135 -80
- workbench/core/artifacts/monitor_core.py +33 -248
- workbench/core/artifacts/parameter_store_core.py +98 -0
- workbench/core/cloud_platform/aws/aws_account_clamp.py +50 -1
- workbench/core/cloud_platform/aws/aws_meta.py +12 -5
- workbench/core/cloud_platform/aws/aws_session.py +4 -4
- workbench/core/pipelines/pipeline_executor.py +1 -1
- workbench/core/transforms/data_to_features/light/molecular_descriptors.py +4 -4
- workbench/core/transforms/features_to_model/features_to_model.py +62 -40
- workbench/core/transforms/model_to_endpoint/model_to_endpoint.py +76 -15
- workbench/core/transforms/pandas_transforms/pandas_to_features.py +38 -2
- workbench/core/views/training_view.py +113 -42
- workbench/core/views/view.py +53 -3
- workbench/core/views/view_utils.py +4 -4
- workbench/model_script_utils/model_script_utils.py +339 -0
- workbench/model_script_utils/pytorch_utils.py +405 -0
- workbench/model_script_utils/uq_harness.py +278 -0
- workbench/model_scripts/chemprop/chemprop.template +649 -0
- workbench/model_scripts/chemprop/generated_model_script.py +649 -0
- workbench/model_scripts/chemprop/model_script_utils.py +339 -0
- workbench/model_scripts/chemprop/requirements.txt +3 -0
- workbench/model_scripts/custom_models/chem_info/fingerprints.py +175 -0
- workbench/model_scripts/custom_models/chem_info/mol_descriptors.py +483 -0
- workbench/model_scripts/custom_models/chem_info/mol_standardize.py +450 -0
- workbench/model_scripts/custom_models/chem_info/molecular_descriptors.py +7 -9
- workbench/model_scripts/custom_models/chem_info/morgan_fingerprints.py +1 -1
- workbench/model_scripts/custom_models/proximity/feature_space_proximity.py +194 -0
- workbench/model_scripts/custom_models/proximity/feature_space_proximity.template +8 -10
- workbench/model_scripts/custom_models/uq_models/bayesian_ridge.template +7 -8
- workbench/model_scripts/custom_models/uq_models/ensemble_xgb.template +20 -21
- workbench/model_scripts/custom_models/uq_models/feature_space_proximity.py +194 -0
- workbench/model_scripts/custom_models/uq_models/gaussian_process.template +5 -11
- workbench/model_scripts/custom_models/uq_models/ngboost.template +30 -18
- workbench/model_scripts/custom_models/uq_models/requirements.txt +1 -3
- workbench/model_scripts/ensemble_xgb/ensemble_xgb.template +15 -17
- workbench/model_scripts/meta_model/generated_model_script.py +209 -0
- workbench/model_scripts/meta_model/meta_model.template +209 -0
- workbench/model_scripts/pytorch_model/generated_model_script.py +444 -500
- workbench/model_scripts/pytorch_model/model_script_utils.py +339 -0
- workbench/model_scripts/pytorch_model/pytorch.template +440 -496
- workbench/model_scripts/pytorch_model/pytorch_utils.py +405 -0
- workbench/model_scripts/pytorch_model/requirements.txt +1 -1
- workbench/model_scripts/pytorch_model/uq_harness.py +278 -0
- workbench/model_scripts/scikit_learn/generated_model_script.py +7 -12
- workbench/model_scripts/scikit_learn/scikit_learn.template +4 -9
- workbench/model_scripts/script_generation.py +20 -11
- workbench/model_scripts/uq_models/generated_model_script.py +248 -0
- workbench/model_scripts/xgb_model/generated_model_script.py +372 -404
- workbench/model_scripts/xgb_model/model_script_utils.py +339 -0
- workbench/model_scripts/xgb_model/uq_harness.py +278 -0
- workbench/model_scripts/xgb_model/xgb_model.template +369 -401
- workbench/repl/workbench_shell.py +28 -19
- workbench/resources/open_source_api.key +1 -1
- workbench/scripts/endpoint_test.py +162 -0
- workbench/scripts/lambda_test.py +73 -0
- workbench/scripts/meta_model_sim.py +35 -0
- workbench/scripts/ml_pipeline_batch.py +137 -0
- workbench/scripts/ml_pipeline_sqs.py +186 -0
- workbench/scripts/monitor_cloud_watch.py +20 -100
- workbench/scripts/training_test.py +85 -0
- workbench/utils/aws_utils.py +4 -3
- workbench/utils/chem_utils/__init__.py +0 -0
- workbench/utils/chem_utils/fingerprints.py +175 -0
- workbench/utils/chem_utils/misc.py +194 -0
- workbench/utils/chem_utils/mol_descriptors.py +483 -0
- workbench/utils/chem_utils/mol_standardize.py +450 -0
- workbench/utils/chem_utils/mol_tagging.py +348 -0
- workbench/utils/chem_utils/projections.py +219 -0
- workbench/utils/chem_utils/salts.py +256 -0
- workbench/utils/chem_utils/sdf.py +292 -0
- workbench/utils/chem_utils/toxicity.py +250 -0
- workbench/utils/chem_utils/vis.py +253 -0
- workbench/utils/chemprop_utils.py +141 -0
- workbench/utils/cloudwatch_handler.py +1 -1
- workbench/utils/cloudwatch_utils.py +137 -0
- workbench/utils/config_manager.py +3 -7
- workbench/utils/endpoint_utils.py +5 -7
- workbench/utils/license_manager.py +2 -6
- workbench/utils/meta_model_simulator.py +499 -0
- workbench/utils/metrics_utils.py +256 -0
- workbench/utils/model_utils.py +278 -79
- workbench/utils/monitor_utils.py +44 -62
- workbench/utils/pandas_utils.py +3 -3
- workbench/utils/pytorch_utils.py +87 -0
- workbench/utils/shap_utils.py +11 -57
- workbench/utils/workbench_logging.py +0 -3
- workbench/utils/workbench_sqs.py +1 -1
- workbench/utils/xgboost_local_crossfold.py +267 -0
- workbench/utils/xgboost_model_utils.py +127 -219
- workbench/web_interface/components/model_plot.py +14 -2
- workbench/web_interface/components/plugin_unit_test.py +5 -2
- workbench/web_interface/components/plugins/dashboard_status.py +3 -1
- workbench/web_interface/components/plugins/generated_compounds.py +1 -1
- workbench/web_interface/components/plugins/model_details.py +38 -74
- workbench/web_interface/components/plugins/scatter_plot.py +6 -10
- {workbench-0.8.162.dist-info → workbench-0.8.220.dist-info}/METADATA +31 -9
- {workbench-0.8.162.dist-info → workbench-0.8.220.dist-info}/RECORD +128 -96
- workbench-0.8.220.dist-info/entry_points.txt +11 -0
- {workbench-0.8.162.dist-info → workbench-0.8.220.dist-info}/licenses/LICENSE +1 -1
- workbench/core/cloud_platform/aws/aws_df_store.py +0 -404
- workbench/core/cloud_platform/aws/aws_parameter_store.py +0 -280
- workbench/model_scripts/custom_models/chem_info/local_utils.py +0 -769
- workbench/model_scripts/custom_models/chem_info/tautomerize.py +0 -83
- workbench/model_scripts/custom_models/meta_endpoints/example.py +0 -53
- workbench/model_scripts/custom_models/proximity/generated_model_script.py +0 -138
- workbench/model_scripts/custom_models/proximity/proximity.py +0 -384
- workbench/model_scripts/custom_models/uq_models/generated_model_script.py +0 -393
- workbench/model_scripts/custom_models/uq_models/mapie_xgb.template +0 -203
- workbench/model_scripts/custom_models/uq_models/meta_uq.template +0 -273
- workbench/model_scripts/custom_models/uq_models/proximity.py +0 -384
- workbench/model_scripts/ensemble_xgb/generated_model_script.py +0 -279
- workbench/model_scripts/quant_regression/quant_regression.template +0 -279
- workbench/model_scripts/quant_regression/requirements.txt +0 -1
- workbench/utils/chem_utils.py +0 -1556
- workbench/utils/execution_environment.py +0 -211
- workbench/utils/fast_inference.py +0 -167
- workbench/utils/resource_utils.py +0 -39
- workbench-0.8.162.dist-info/entry_points.txt +0 -5
- {workbench-0.8.162.dist-info → workbench-0.8.220.dist-info}/WHEEL +0 -0
- {workbench-0.8.162.dist-info → workbench-0.8.220.dist-info}/top_level.txt +0 -0
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@@ -41,12 +41,10 @@ class ModelDetails(PluginInterface):
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id=self.component_id,
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children=[
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html.H4(id=f"{self.component_id}-header", children="Model: Loading..."),
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dcc.Markdown(id=f"{self.component_id}-summary"),
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dcc.Markdown(id=f"{self.component_id}-summary", dangerously_allow_html=True),
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html.H5(children="Inference Metrics", style={"marginTop": "20px"}),
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dcc.Dropdown(id=f"{self.component_id}-dropdown", className="dropdown"),
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dcc.Markdown(id=f"{self.component_id}-metrics"),
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html.H5(children="Cross Fold Metrics", style={"marginTop": "20px"}),
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dcc.Markdown(id=f"{self.component_id}-cross-metrics", dangerously_allow_html=True),
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],
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)
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(f"{self.component_id}-dropdown", "options"),
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(f"{self.component_id}-dropdown", "value"),
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(f"{self.component_id}-metrics", "children"),
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(f"{self.component_id}-cross-metrics", "children"),
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]
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self.signals = [(f"{self.component_id}-dropdown", "value")]
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# Populate the inference runs dropdown
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inference_runs, default_run = self.get_inference_runs()
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metrics = self.inference_metrics(default_run)
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cross_metrics = self.cross_metrics()
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# Return the updated property values for the plugin
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return [header, details, inference_runs, default_run, metrics
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return [header, details, inference_runs, default_run, metrics]
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def register_internal_callbacks(self):
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@callback(
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Returns:
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str: A markdown string
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"""
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# Get these fields from the model
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show_fields = [
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"input",
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"workbench_registered_endpoints",
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"workbench_model_type",
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"workbench_model_target",
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"workbench_model_features",
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]
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# Construct the markdown string
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summary = self.current_model.summary()
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markdown = ""
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# Health tags
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markdown += health_tag_markdown(summary.get("health_tags", []))
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# Simple fields
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markdown += f"**input:** {summary.get('input', '-')} \n"
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endpoints = ", ".join(summary.get("workbench_registered_endpoints", []))
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markdown += f"**registered_endpoints:** {endpoints or '-'} \n"
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markdown += f"**model_type:** {summary.get('workbench_model_type', '-')} \n"
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markdown += f"**model_target:** {summary.get('workbench_model_target', '-')} \n"
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# Features (truncated)
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features = summary.get("workbench_model_features", [])
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features_str = f"({len(features)}) {', '.join(features)[:100]}..."
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markdown += f"**features:** {features_str} \n"
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# Parameter Store metadata
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model_name = summary["name"]
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meta_data = self.params.get(f"/workbench/models/{model_name}/meta", warn=False)
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if meta_data:
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markdown += dict_to_markdown(meta_data, title="Additional Metadata")
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# Tags
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markdown += tags_to_markdown(summary.get("workbench_tags", "")) + " \n"
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# Hyperparameters
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hyperparams = summary.get("hyperparameters")
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markdown += dict_to_collapsible_html(hyperparams, title="Hyperparameters", collapse_all=True)
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return markdown
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markdown += dict_to_markdown(inference_data, title="Additional Inference Metrics")
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return markdown
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x="logd",
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y="prediction",
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color="
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color="prediction_std",
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).run()
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Metadata-Version: 2.4
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Name: workbench
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Version: 0.8.
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Version: 0.8.220
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Summary: Workbench: A Dashboard and Python API for creating and deploying AWS SageMaker Model Pipelines
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Author-email: SuperCowPowers LLC <support@supercowpowers.com>
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License
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License: MIT License
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Copyright (c) 2021-2026 SuperCowPowers LLC
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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Project-URL: Homepage, https://github.com/SuperCowPowers/workbench
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Keywords: SageMaker,Machine Learning,AWS,Python,Utilities
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Classifier: Development Status :: 4 - Beta
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Classifier: Programming Language :: Python :: 3.10
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Programming Language :: Python :: 3.13
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Classifier: Topic :: Scientific/Engineering
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Requires-Python: >=3.10
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Description-Content-Type: text/markdown
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Requires-Dist: numpy>=1.26.4
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Requires-Dist: dash-bootstrap-components>=1.6.0; extra == "ui"
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Requires-Dist: dash-bootstrap-templates>=1.3.0; extra == "ui"
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@@ -48,8 +71,8 @@ Requires-Dist: flake8; extra == "dev"
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Requires-Dist: plotly>=6.0.0; extra == "all"
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Requires-Dist: dash>=3.0.0; extra == "all"
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Requires-Dist: dash-bootstrap-components>=1.6.0; extra == "all"
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Requires-Dist: dash-bootstrap-templates>=1.3.0; extra == "all"
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@@ -168,7 +191,6 @@ Using Workbench will minimize the time and manpower needed to incorporate AWS ML
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|
```
|
|
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pip install workbench # Installs Workbench with Core Dependencies
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|
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pip install 'workbench[ml-tools]' # + Shap and NetworkX
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pip install 'workbench[ui]' # + Plotly/Dash
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pip install 'workbench[dev]' # + Pytest/flake8/black
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pip install 'workbench[all]' # + All the things :)
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