wind_ae 0.2.0__py3-none-any.whl

docs/conf.py

@@ -0,0 +1,35 @@
+# Configuration file for the Sphinx documentation builder.
+import os
+import sys
+sys.path.insert(0, os.path.abspath('../wind_ae/'))
+sys.path.insert(0, os.path.abspath('../wind_ae/wrapper/'))
+sys.path.insert(0, os.path.abspath('../wind_ae/wrapper/wrapper_utils/'))
+
+
+# For the full list of built-in configuration values, see the documentation:
+# https://www.sphinx-doc.org/en/master/usage/configuration.html
+
+# -- Project information -----------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
+
+project = 'Wind-AE'
+copyright = '2025, Madelyn Broome, John McCann, Ruth Murray-Clay'
+author = 'Madelyn Broome, John McCann, Ruth Murray-Clay'
+release = '0.2.0'
+root_doc = 'index'
+autodoc_member_order = 'bysource'
+
+# -- General configuration ---------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
+
+extensions = ["sphinx.ext.autodoc", "sphinx.ext.napoleon", "nbsphinx"]
+
+templates_path = ['_templates']
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+
+# -- Options for HTML output -------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
+
+html_theme = 'sphinx_rtd_theme'
+html_static_path = ['_static']

saves/setup.py

@@ -0,0 +1,30 @@
+#! /usr/bin/env python
+# -*- coding: utf-8 -*-
+
+import os
+import sys
+
+try:
+    from setuptools import setup, find_packages
+except ImportError:
+    from distutils.core import setup
+
+setup(
+    name="wind_ae",
+    version="1.0",
+    author='Madelyn Broome, John McCann, Ruth Murray-Clay',
+    author_email='mabroome@ucsc.edu',
+    description="1D relaxation Parker wind model based on Murray-Clay et al. (2009)",
+    install_requires=[line.strip() for line in
+                      open('requirements.txt', 'r').readlines()],
+    packages=find_packages(),
+    package_data={
+        'wind_ae': ['wind_ae/wrapper/wrapper_utils/*.dat',
+                    'wind_ae/saves/*.csv',
+                    'wind_ae/inputs/*', 
+                    'wind_ae/McAstro/atoms/*.csv',
+                    'wind_ae/McAstro/atoms/*.txt',
+                    'wind_ae/McAstro/atoms/Lodders.dat'],  # include all .txt files in the data folder
+    },
+    include_package_data=True,
+)

wind_ae/McAstro/__init__.py

@@ -0,0 +1,44 @@
+import os
+import importlib
+
+__version__ = "0.1"
+
+class McAstroIS:
+    """
+    McAstro import status
+    """
+    def __init__(self):
+        """
+        Try to import all packages contained in self.packages and save status.
+        """
+        self.packages = []
+        self.findpackages()
+        self.importStatus = {}
+        for m in self.packages:
+            try:
+                importlib.import_module("." + m, "McAstro")
+                self.importStatus[m] = True
+            except Exception:
+                self.importStatus[m] = False
+            
+    def findpackages(self):
+        for root, dirs, fns in os.walk(__path__[0]):
+            for dir_ in dirs:
+                if os.path.isfile(os.path.join(__path__[0], dir_,
+                                               "__init__.py")):
+                    self.packages.append(dir_)
+            break;
+    
+    def showStatus(self):
+        print() 
+        print("               McAstro import status")
+        print("--------------------------------------------------")
+        print("{:41s} | {:6s}".format("Package", "Loaded"))
+        print("--------------------------------------------------")
+        for m, v in sorted(self.importStatus.items()):
+            print("{:41s} | {}".format(m, v))
+        
+
+def importCheck():
+    m = McAstroIS()
+    m.showStatus()

wind_ae/McAstro/atoms/Lodders.dat

@@ -0,0 +1,85 @@
+#Lodders 2009
+Z name source N_per_Si err A err2
+1 H s 2.93E+10 0 12.00 0
+2 He s 2.47E+09 0.12E+09 10.93 0.02
+3 Li m 55.6 7.2 3.28 0.05
+4 Be m 0.612 0.043 1.32 0.03
+5 B m 18.8 1.9 2.81 0.04
+6 C s 7.19E+06 0.69E+06 8.39 0.04
+7 N s 2.12E+06 0.68E+06 7.86 0.12
+8 O s 1.57E+07 0.28E+07 8.73 0.07
+9 F m 804 121 4.44 0.06
+10 Ne s 3.29E+06 0.85E+06 8.05 0.10
+11 Na a 57700 5100 6.29 0.04
+12 Mg a 1.03E+06 0.15E+06 7.54 0.06
+13 Al a 84600 15300 6.46 0.07
+14 Si m 1.00E+06 0.03E+06 7.53 0.01
+15 P a 8300 1100 5.45 0.05
+16 S a 4.21E+05 0.24E+05 7.16 0.02
+17 Cl m 5170 780 5.25 0.06
+18 Ar s 92700 24000 6.50 0.10
+19 K a 3760 330 5.11 0.04
+20 Ca m 60400 3000 6.31 0.02
+21 Sc m 34.4 1.7 3.07 0.02
+22 Ti m 2470 200 4.93 0.03
+23 V a 286 20 3.99 0.03
+24 Cr a 13100 500 5.65 0.02
+25 Mn m 9220 280 5.50 0.01
+26 Fe a 8.48E+05 1.69E+05 7.46 0.08
+27 Co a 2350 500 4.90 0.08
+28 Ni a 49000 5000 6.22 0.04
+29 Cu m 541 54 4.27 0.04
+30 Zn m 1300 130 4.65 0.04
+31 Ga m 36.6 1.8 3.10 0.02
+32 Ge a 115 18 3.59 0.06
+33 As m 6.10 0.55 2.32 0.04
+34 Se m 67.5 4.7 3.36 0.03
+35 Br m 10.7 1.6 2.56 0.06
+36 Kr t 55.8 11.3 3.28 0.08
+37 Rb m 7.10 0.50 2.38 0.03
+38 Sr m 23.4 1.6 2.90 0.03
+39 Y a 4.63 0.50 2.20 0.04
+40 Zr a 10.8 1.2 2.57 0.04
+41 Nb a 0.780 0.139 1.42 0.07
+42 Mo a 2.55 0.40 1.94 0.06
+44 Ru m 1.78 0.11 1.78 0.03
+45 Rh a 0.370 0.128 1.10 0.13
+46 Pd a 1.36 0.15 1.67 0.04
+47 Ag m 0.489 0.024 1.22 0.02
+48 Cd m 1.57 0.11 1.73 0.03
+49 In m 0.178 0.012 0.78 0.03
+50 Sn m 3.60 0.54 2.09 0.06
+51 Sb m 0.313 0.047 1.03 0.06
+52 Te m 4.69 0.33 2.20 0.03
+53 I m 1.10 0.22 1.57 0.08
+54 Xe t 5.46 1.10 2.27 0.08
+55 Cs m 0.371 0.019 1.10 0.02
+56 Ba a 4.47 0.81 2.18 0.07
+57 La m 0.457 0.023 1.19 0.02
+58 Ce a 1.18 0.19 1.60 0.06
+59 Pr a 0.172 0.020 0.77 0.05
+60 Nd m 0.857 0.043 1.47 0.02
+62 Sm m 0.265 0.013 0.96 0.02
+63 Eu a 0.0984 0.0106 0.53 0.04
+64 Gd a 0.360 0.049 1.09 0.06
+65 Tb m 0.0634 0.0044 0.34 0.03
+66 Dy a 0.404 0.062 1.14 0.06
+67 Ho m 0.0910 0.0064 0.49 0.03
+68 Er a 0.262 0.042 0.95 0.06
+69 Tm m 0.0406 0.0028 0.14 0.03
+70 Yb m 0.256 0.013 0.94 0.02
+71 Lu m 0.0380 0.0019 0.11 0.02
+72 Hf m 0.156 0.008 0.73 0.02
+73 Ta m 0.0210 0.0021 -0.14 0.04
+74 W m 0.137 0.014 0.67 0.04
+75 Re m 0.0554 0.0055 0.28 0.04
+76 Os m 0.680 0.054 1.37 0.03
+77 Ir a 0.672 0.092 1.36 0.06
+78 Pt m 1.27 0.10 1.64 0.03
+79 Au m 0.195 0.019 0.82 0.04
+80 Hg m 0.458 0.092 1.19 0.08
+81 Tl m 0.182 0.015 0.79 0.03
+82 Pb m 3.33 0.23 2.06 0.03
+83 Bi m 0.138 0.012 0.67 0.04
+90 Th m 0.0351 0.0028 0.08 0.03
+92 U m 0.00893 0.00071 -0.52 0.03

wind_ae/McAstro/atoms/Verner.csv

@@ -0,0 +1,191 @@
+# Z: number of protons
+# Ne: number of electrons
+# E_th: Ionization potential (in eV)
+# E_max: Value which cross-section should not be extrapolated past
+# sigma_0 (in MB), E_0 (in eV), y_a, P, y_w, y_0, y_1: fitted parameters
+Z,Ne,E_th,E_max,E_0,sigma_0,y_a,P,y_w,y_0,y_1
+1,1,1.360E+01,5.000E+04,4.298E-01,5.475E+04,3.288E+01,2.963E+00,0.000E+00,0.000E+00,0.000E+00
+2,2,2.459E+01,5.000E+04,1.361E+01,9.492E+02,1.469E+00,3.188E+00,2.039E+00,4.434E-01,2.136E+00
+2,1,5.442E+01,5.000E+04,1.720E+00,1.369E+04,3.288E+01,2.963E+00,0.000E+00,0.000E+00,0.000E+00
+3,3,5.392E+00,6.439E+01,3.107E+00,6.245E+01,1.501E+01,4.895E+00,0.000E+00,0.000E+00,0.000E+00
+3,2,7.564E+01,5.000E+04,2.006E+01,3.201E+02,7.391E+00,2.916E+00,0.000E+00,0.000E+00,0.000E+00
+3,1,1.225E+02,5.000E+04,3.871E+00,6.083E+03,3.288E+01,2.963E+00,0.000E+00,0.000E+00,0.000E+00
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