westpa 2022.6__cp39-cp39-macosx_10_9_x86_64.whl → 2022.8__cp39-cp39-macosx_10_9_x86_64.whl
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- westpa/__init__.py +0 -4
- westpa/_version.py +3 -3
- westpa/cli/tools/w_multi_west.py +15 -10
- westpa/core/binning/_assign.cpython-39-darwin.so +0 -0
- westpa/core/binning/assign.py +3 -1
- westpa/core/kinetics/_kinetics.cpython-39-darwin.so +0 -0
- westpa/core/propagators/executable.py +29 -18
- westpa/core/reweight/_reweight.cpython-39-darwin.so +0 -0
- westpa/core/states.py +32 -3
- westpa/core/trajectory.py +1 -0
- westpa/core/yamlcfg.py +1 -0
- westpa/fasthist/_fasthist.cpython-39-darwin.so +0 -0
- westpa/mclib/_mclib.cpython-39-darwin.so +0 -0
- westpa/oldtools/aframe/data_reader.py +1 -1
- westpa/tools/__init__.py +1 -0
- westpa/trajtree/_trajtree.cpython-39-darwin.so +0 -0
- westpa/work_managers/environment.py +0 -1
- westpa/work_managers/zeromq/node.py +0 -1
- {westpa-2022.6.dist-info → westpa-2022.8.dist-info}/METADATA +6 -6
- {westpa-2022.6.dist-info → westpa-2022.8.dist-info}/RECORD +25 -25
- {westpa-2022.6.dist-info → westpa-2022.8.dist-info}/WHEEL +1 -1
- {westpa-2022.6.dist-info → westpa-2022.8.dist-info}/AUTHORS +0 -0
- {westpa-2022.6.dist-info → westpa-2022.8.dist-info}/LICENSE +0 -0
- {westpa-2022.6.dist-info → westpa-2022.8.dist-info}/entry_points.txt +0 -0
- {westpa-2022.6.dist-info → westpa-2022.8.dist-info}/top_level.txt +0 -0
westpa/__init__.py
CHANGED
westpa/_version.py
CHANGED
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@@ -8,11 +8,11 @@ import json
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version_json = '''
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{
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-
"date": "
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"date": "2024-04-15T22:37:00-0400",
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"dirty": false,
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"error": null,
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"full-revisionid": "
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"version": "2022.
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"full-revisionid": "587296bd42835960dc67dc3e91ead8f4dd2c6d97",
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"version": "2022.08"
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}
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''' # END VERSION_JSON
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westpa/cli/tools/w_multi_west.py
CHANGED
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@@ -159,13 +159,6 @@ Command-line options
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except ValueError:
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self.total_walkers[:] += west['summary'][:-1]['n_particles'][: len(self.total_walkers)]
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class Segment:
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def __init__(self, weight=0, iteration=0, simid=0, recycled_in=0):
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self.weight = weight
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self.iteration = iteration
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self.simid = simid
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self.recycled_in = recycled_in
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-
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def go(self):
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pi = self.progress.indicator
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self.istates = True # Assume serendipitously istates is same between runs...
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@@ -174,7 +167,11 @@ Command-line options
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self.open_files()
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self.total_number_of_walkers()
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if self.auxall is True:
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-
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try:
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self.aux = list(self.westH5[1]['iterations/iter_00000001/auxdata'].keys())
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except KeyError:
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self.aux = None
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log.warning('No auxdata. Proceeding forward without merging auxdata.')
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# Create a giant WEST.h5 file, separating the individual walkers, and renormalizing the weights.
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# It should then be compatible with existing toolsets.
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# Isn't really going to start with auxdata, but we'll add it in.
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@@ -240,7 +237,7 @@ Command-line options
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self.futr_iter[i] = []
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self.past_rm[i] = []
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self.futr_rm[i] = []
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-
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pi.new_operation('Recreating...', self.niters)
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# tracker = SummaryTracker()
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# self.output_file.close()
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@@ -262,12 +259,20 @@ Command-line options
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if addition.dtype != istate_dtype:
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addition = create_idtype_array(addition)
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final_istate_index = np.append(final_istate_index, addition)
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final_istate_pcoord = np.append(final_istate_pcoord, west['ibstates/0/istate_pcoord'][:])
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final_istate_pcoord = np.append(final_istate_pcoord, west['ibstates/0/istate_pcoord'][:], axis=0)
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# Saving them into self.output_file
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self.output_file['ibstates/0'].create_dataset('istate_index', data=final_istate_index, dtype=istate_dtype)
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self.output_file['ibstates/0'].create_dataset('istate_pcoord', data=final_istate_pcoord)
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# Remaking the ibstates index link
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master_index_row = self.output_file['ibstates/index'][0]
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master_index_row['iter_valid'] = 0
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master_index_row['n_bstates'] = len(self.output_file['ibstates/0/bstate_index'])
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master_index_row['group_ref'] = self.output_file['ibstates/0'].ref
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self.output_file['ibstates/index'][0] = master_index_row
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for iter in range(self.niters):
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# We have the following datasets in each iteration:
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# ibstates, which can now be combined with --ibstates
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Binary file
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westpa/core/binning/assign.py
CHANGED
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@@ -40,7 +40,6 @@ the total number of bins within the mapper.
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'''
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-
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import hashlib
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import logging
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import pickle
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@@ -410,6 +409,9 @@ class RecursiveBinMapper(BinMapper):
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# we have updated our list of recursed bins, so set our own start index to trigger a recursive
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# reassignment of mappers' output values
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# Note that we're reordering the recursion targets based on outer bin numbers (dict keys) first,
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# so the order the mappers were added no longer matters...
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self._recursion_targets = {k: self._recursion_targets[k] for k in sorted(self._recursion_targets)}
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self.start_index = self.start_index
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def assign(self, coords, mask=None, output=None):
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Binary file
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import westpa
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from westpa.core.extloader import get_object
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from westpa.core.propagators import WESTPropagator
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from westpa.core.states import BasisState, InitialState
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from westpa.core.states import BasisState, InitialState, return_state_type
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from westpa.core.segment import Segment
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from westpa.core.yamlcfg import check_bool
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data = load_trajectory(coord_folder)
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segment.data['iterh5/trajectory'] = data
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except Exception as e:
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log.warning('could not read any data for
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log.warning('could not read any {} data for HDF5 Framework: {}'.format(fieldname, str(e)))
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def restart_loader(fieldname, restart_folder, segment, single_point):
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segment.data['iterh5/restart'] = d.getvalue() + b'\x01' # add tail protection
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except Exception as e:
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log.warning('could not read any data for
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log.warning('could not read any {} data for HDF5 Framework: {}'.format(fieldname, str(e)))
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finally:
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d.close()
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safe_extract(t, path=path)
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except ValueError as e:
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log.warning('could not write restart data for {}: {}'.format(str(segment), str(e)))
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log.warning('could not write HDF5 Framework restart data for {}: {}'.format(str(segment), str(e)))
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d = BytesIO()
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if segment.n_iter == 1:
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log.warning(
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)
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)
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except Exception as e:
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log.warning('could not write restart data for {}: {}'.format(str(segment), str(e)))
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log.warning('could not write HDF5 Framework restart data for {}: {}'.format(str(segment), str(e)))
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finally:
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d.close()
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segment.data['iterh5/log'] = d.getvalue() + b'\x01' # add tail protection
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log.warning('could not read any data for {}: {}'.format(fieldname, str(e)))
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finally:
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d.close()
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# can never disable pcoord collection
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dsinfo['enabled'] = True
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loader_directive = dsinfo.get('loader')
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loader_directive = dsinfo.get('loader', None)
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if callable(loader_directive):
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loader = loader_directive
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elif loader_directive in data_loaders.keys():
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else:
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# YOLO. Or maybe it wasn't specified.
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if loader:
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return addtl_env, return_files, del_return_files
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def retrieve_dataset_return(self,
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def retrieve_dataset_return(self, state, return_files, del_return_files, single_point):
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'''Retrieve returned data from the temporary locations directed by the environment variables.
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``
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is a ``dict`` where the keys are the dataset names and
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retrieved.'''
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``state`` is a ``Segment``, ``BasisState`` , or ``InitialState``object that the return data is
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associated with. ``return_files`` is a ``dict`` where the keys are the dataset names and
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the values are the paths to the temporarily files that contain the returned data.
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``del_return_files`` is a ``dict`` where the keys are the names of datasets to be deleted
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(if the corresponding value is set to ``True``) once the data is retrieved.'''
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try:
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loader(dataset, filename,
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loader(dataset, filename, state, single_point=single_point)
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except Exception as e:
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log.error('could not read {} from {!r}: {!r}'.format(dataset, filename, e))
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log.error('could not read {} for {} {} from {!r}: {!r}'.format(dataset, state_name, state_id, filename, e))
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if isinstance(state, Segment):
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state.status = state.SEG_STATUS_FAILED
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break
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if del_return_files.get(dataset, False):
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shutil.rmtree(filename)
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except Exception as e:
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log.warning(
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log.warning(
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'could not delete {} file {!r} for {} {}: {!r}'.format(dataset, filename, state_name, state_id, e)
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)
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# Specific functions required by the WEST framework
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def get_pcoord(self, state):
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Binary file
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westpa/core/states.py
CHANGED
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@classmethod
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def states_from_file(cls,
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def states_from_file(cls, statefile):
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states = []
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open_statefile = open(statefile, 'rt')
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except TypeError:
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open_statefile = statefile
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for line in open_statefile:
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# remove comment portion
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try:
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probability = float(fields[1])
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except ValueError:
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raise ValueError('invalid probability ({!r}) {} line {:d}'.format(fields[1],
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raise ValueError('invalid probability ({!r}) {} line {:d}'.format(fields[1], statefile, lineno))
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try:
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auxref = fields[2].strip()
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states.append(cls(state_id=None, probability=probability, label=label, auxref=auxref))
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try:
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open_statefile.close()
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except Exception:
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pass
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return states
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def as_numpy_record(self):
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open_statefile = statefile
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for line in open_statefile:
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line = line.partition('#')[0].strip()
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if not line:
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continue
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fields = line.split()
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labels.append(fields[0])
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pcoord_values.append(np.array(list(map(dtype, fields[1:])), dtype=dtype))
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@@ -328,3 +344,16 @@ def pare_basis_initial_states(basis_states, initial_states, segments=None):
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)
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329
345
|
|
|
330
346
|
return return_bstates, return_istates
|
|
347
|
+
|
|
348
|
+
|
|
349
|
+
def return_state_type(state_obj):
|
|
350
|
+
'''Convinience function for returning the state ID and type of the state_obj pointer'''
|
|
351
|
+
|
|
352
|
+
if isinstance(state_obj, Segment):
|
|
353
|
+
return type(state_obj).__name__, state_obj.seg_id
|
|
354
|
+
elif isinstance(state_obj, InitialState):
|
|
355
|
+
return type(state_obj).__name__, state_obj.state_id
|
|
356
|
+
elif isinstance(state_obj, BasisState):
|
|
357
|
+
return type(state_obj).__name__, state_obj.state_id
|
|
358
|
+
else:
|
|
359
|
+
return 'Unknown', float('inf')
|
westpa/core/trajectory.py
CHANGED
|
@@ -294,6 +294,7 @@ def load_trajectory(folder):
|
|
|
294
294
|
'''
|
|
295
295
|
traj_file = top_file = None
|
|
296
296
|
file_list = [f_name for f_name in os.listdir(folder) if not f_name.startswith('.')]
|
|
297
|
+
|
|
297
298
|
for filename in file_list:
|
|
298
299
|
filepath = os.path.join(folder, filename)
|
|
299
300
|
if not os.path.isfile(filepath):
|
westpa/core/yamlcfg.py
CHANGED
|
Binary file
|
|
Binary file
|
|
@@ -61,7 +61,7 @@ class WESTDataReaderMixin(AnalysisMixin):
|
|
|
61
61
|
westpa.rc.pstatus("Using WEST data from '{}'".format(self.west_h5name))
|
|
62
62
|
|
|
63
63
|
self.data_manager = westpa.rc.get_data_manager()
|
|
64
|
-
self.data_manager.
|
|
64
|
+
self.data_manager.we_h5filename = self.west_h5name
|
|
65
65
|
self.data_manager.open_backing(mode='r')
|
|
66
66
|
|
|
67
67
|
if upcall:
|
westpa/tools/__init__.py
CHANGED
|
@@ -1,4 +1,5 @@
|
|
|
1
1
|
'''tools -- classes for implementing command-line tools for WESTPA'''
|
|
2
|
+
|
|
2
3
|
from .core import WESTTool, WESTParallelTool, WESTToolComponent, WESTSubcommand, WESTMasterCommand, WESTMultiTool
|
|
3
4
|
from .data_reader import WESTDataReader, WESTDSSynthesizer, WESTWDSSynthesizer
|
|
4
5
|
from .iter_range import IterRangeSelection
|
|
Binary file
|
|
@@ -1,6 +1,7 @@
|
|
|
1
1
|
Metadata-Version: 2.1
|
|
2
2
|
Name: westpa
|
|
3
|
-
Version: 2022.
|
|
3
|
+
Version: 2022.8
|
|
4
|
+
Summary: WESTPA is a package for constructing and running stochastic simulations using the "weighted ensemble" approach of Huber and Kim (1996).
|
|
4
5
|
Home-page: http://github.com/westpa/westpa
|
|
5
6
|
License: MIT
|
|
6
7
|
Classifier: Development Status :: 5 - Production/Stable
|
|
@@ -14,7 +15,7 @@ Classifier: Programming Language :: Cython
|
|
|
14
15
|
Requires-Python: >=3.6
|
|
15
16
|
License-File: LICENSE
|
|
16
17
|
License-File: AUTHORS
|
|
17
|
-
Requires-Dist: numpy
|
|
18
|
+
Requires-Dist: numpy <2,>=1.16.0
|
|
18
19
|
Requires-Dist: scipy >=0.19.1
|
|
19
20
|
Requires-Dist: h5py >=2.10
|
|
20
21
|
Requires-Dist: mdtraj >=1.9.5
|
|
@@ -25,8 +26,7 @@ Requires-Dist: blessings
|
|
|
25
26
|
Requires-Dist: ipykernel
|
|
26
27
|
Requires-Dist: tqdm
|
|
27
28
|
Requires-Dist: pandas
|
|
28
|
-
Requires-Dist: tables
|
|
29
|
-
Requires-Dist: tables ; python_version >= "3.9"
|
|
29
|
+
Requires-Dist: tables
|
|
30
30
|
Provides-Extra: dev
|
|
31
31
|
Requires-Dist: pytest ; extra == 'dev'
|
|
32
32
|
Requires-Dist: pytest-cov ; extra == 'dev'
|
|
@@ -49,7 +49,7 @@ WESTPA 2.0
|
|
|
49
49
|
|
|
50
50
|
|docs| |usersgroup| |develgroup|
|
|
51
51
|
|
|
52
|
-
.. |ghactions| image:: https://github.com/westpa/westpa/actions/workflows/test.yaml/badge.svg?branch=
|
|
52
|
+
.. |ghactions| image:: https://github.com/westpa/westpa/actions/workflows/test.yaml/badge.svg?branch=westpa2
|
|
53
53
|
:target: https://github.com/westpa/westpa/actions/workflows/test.yaml
|
|
54
54
|
:alt: GitHub Actions
|
|
55
55
|
|
|
@@ -143,7 +143,7 @@ To install from source (**not recommended**), start by downloading the correspon
|
|
|
143
143
|
|
|
144
144
|
.. _`releases page`: https://github.com/westpa/westpa/releases
|
|
145
145
|
.. _`Anaconda Python distribution`: https://www.anaconda.com/products/individual
|
|
146
|
-
.. _`wiki`: https://github.com/westpa/westpa/wiki/WESTPA
|
|
146
|
+
.. _`wiki`: https://github.com/westpa/westpa/wiki/Installing-WESTPA
|
|
147
147
|
|
|
148
148
|
---------------
|
|
149
149
|
Getting started
|
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
westpa/_version.py,sha256=
|
|
2
|
-
westpa/__init__.py,sha256=
|
|
3
|
-
westpa/fasthist/_fasthist.cpython-39-darwin.so,sha256=
|
|
1
|
+
westpa/_version.py,sha256=ynQYEhRU4LpCFtVDYsxdHaJVVMjwxfKjIU7OxbyGJwA,499
|
|
2
|
+
westpa/__init__.py,sha256=xyNfYIcP2ncBLu_foO1NKmJrQh8-uYdwvMuM0HsOG1M,329
|
|
3
|
+
westpa/fasthist/_fasthist.cpython-39-darwin.so,sha256=hCIm06QbVOR8MKysucDGWDG993ETnjmdo5kbfNj5B-g,268296
|
|
4
4
|
westpa/fasthist/__init__.py,sha256=oWj0gKEkKfHjGHwkzmpgAxDz55h2ze_sqQVzWSsOP6s,1071
|
|
5
5
|
westpa/fasthist/__main__.py,sha256=7XCBZvrKbBG3KEuQMpZD0jXa3vVMEVfZJTG8MmdbsrM,3902
|
|
6
6
|
westpa/westext/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
@@ -25,7 +25,7 @@ westpa/tools/binning.py,sha256=oFtc_ld8b9JJUYt-AEMe4Z1L8XJ48Lsr8Iw6nTYgGNs,20718
|
|
|
25
25
|
westpa/tools/selected_segs.py,sha256=cC6YKvhxj6IPz9ybF9Te89nBEKtcaypTjzKPPDQC2uc,4943
|
|
26
26
|
westpa/tools/wipi.py,sha256=ozNkR9d3oAUQn_TCyCk2bEKQWEmn6_NOtjXzAJPN1kM,29046
|
|
27
27
|
westpa/tools/plot.py,sha256=JlNe5GenVYjnEPNC_6kesu5qv9H6HFOfrBUjGHfSMqY,12854
|
|
28
|
-
westpa/tools/__init__.py,sha256
|
|
28
|
+
westpa/tools/__init__.py,sha256=HZ4dvK0DV20RfuSzbABWz1qJMIEd1MinBa4tnSDgXa0,1032
|
|
29
29
|
westpa/tools/core.py,sha256=y8kn8TN_R8h3iRE5oES-0BFHk3QLQMOmN66HrlXLons,12102
|
|
30
30
|
westpa/tools/dtypes.py,sha256=5aEHhfqX6BJuTBUyirehZJ_G3al1q5GSWZSHyQmhynU,913
|
|
31
31
|
westpa/tools/data_reader.py,sha256=i4Uv4OGwiPN-vLrCGOf1vtgMgnLqIg0fYVA0Jn4iXG4,6316
|
|
@@ -41,13 +41,13 @@ westpa/core/extloader.py,sha256=yxyJN-lHo3Zjd6jS6_uhC1fIl52H-h8sbV9zYJfEWGg,2239
|
|
|
41
41
|
westpa/core/sim_manager.py,sha256=-dbsf74Q6eSA9SZKUtcPYAekl6OSYKMTpB45VhVMcE0,37906
|
|
42
42
|
westpa/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
43
43
|
westpa/core/h5io.py,sha256=x-n0jgekFhIi1tD7Ob7u_WUmATsulnMXsOvHkdUTHVg,37011
|
|
44
|
-
westpa/core/trajectory.py,sha256=
|
|
44
|
+
westpa/core/trajectory.py,sha256=DL7rsowKxBc1jwT7FPZFlfCWKuwagttZxd3SPgxZKU0,10913
|
|
45
45
|
westpa/core/segment.py,sha256=Gd_5htIZ6xKxxCms9XMtJncehGvMVxZeNdy4drxrnpc,4421
|
|
46
46
|
westpa/core/progress.py,sha256=tEDDn-JPY6ZNzYqyrdgA7peo7pDu8kOMvqfyiHWUgps,6753
|
|
47
47
|
westpa/core/data_manager.py,sha256=xeqt1MtjMGSRs7QN2zxRi0KrQ1cIV4L7JlOnBx-DEYE,71783
|
|
48
|
-
westpa/core/states.py,sha256=
|
|
49
|
-
westpa/core/yamlcfg.py,sha256=
|
|
50
|
-
westpa/core/kinetics/_kinetics.cpython-39-darwin.so,sha256=
|
|
48
|
+
westpa/core/states.py,sha256=umsdgSrYjt2vjw-1kQeiILWmureOBmBaOgg0nQxUVmA,13318
|
|
49
|
+
westpa/core/yamlcfg.py,sha256=B78OEr1n_sIkW6kDzl3FO63tiugaT-1VutAgLxU0i7A,12696
|
|
50
|
+
westpa/core/kinetics/_kinetics.cpython-39-darwin.so,sha256=ceAgGzMWU6Fbzb8vaMaKuOJfmlnGF4PO3gB9tXZcBXs,430768
|
|
51
51
|
westpa/core/kinetics/matrates.py,sha256=1sf7L6ojLE8yT2sFfgeB8eqgjMHdMK2O_Xgyz_RjCzc,5554
|
|
52
52
|
westpa/core/kinetics/events.py,sha256=VqYBN5rVOf3hAYUA6xQ6UN7GP6tVgRFIoP69tfGhkTo,6511
|
|
53
53
|
westpa/core/kinetics/__init__.py,sha256=djtiki7X5-IEzwjwswbdgrolwUIzVAHKxCiI5B3WH28,510
|
|
@@ -56,23 +56,23 @@ westpa/core/binning/binless_driver.py,sha256=T5qWpLnjxCS9RdKeWf7eVCC_s6TQFDENL7X
|
|
|
56
56
|
westpa/core/binning/mab_driver.py,sha256=azSqc9pqHk_zc1ptGNjXARDbK-UAnPVmCiYwebi5mPY,2223
|
|
57
57
|
westpa/core/binning/binless.py,sha256=Fb9TI5swQntzXjmlWFbYQ9yjzjLxDKNVVdmRxRqOnIY,4056
|
|
58
58
|
westpa/core/binning/__init__.py,sha256=XmjBP6fg_id_vDELkcWW3u2GeuL5OPWblvX-kc7mINk,1297
|
|
59
|
-
westpa/core/binning/_assign.cpython-39-darwin.so,sha256=
|
|
59
|
+
westpa/core/binning/_assign.cpython-39-darwin.so,sha256=E-dBzWTZhljcV_DA7BJZWy7uQiDDREI3K8SfnxKpxGo,292536
|
|
60
60
|
westpa/core/binning/mab_manager.py,sha256=PUSA9J-dzmQdWQ9h5DEB9Eed6GVETf1EE43r6AvZLwI,9617
|
|
61
|
-
westpa/core/binning/assign.py,sha256=
|
|
61
|
+
westpa/core/binning/assign.py,sha256=e1YWyU3R12evLAoIWUrEvv3uvdKFo4u_mfKGDcK5AVU,18028
|
|
62
62
|
westpa/core/binning/binless_manager.py,sha256=XgsLaYhknzWA9IHCqOvmnLXSgM303KnKOUjLe1NM0Zw,9414
|
|
63
63
|
westpa/core/binning/mab.py,sha256=YgNWCistmKPFbQp9TpFgnpgGWc-HZTvSwB6ZugPS0Oo,11614
|
|
64
64
|
westpa/core/binning/bins.py,sha256=WDj7DNX3MTVkRvkgAooa9G8VThxw32uIfMTuk9sS194,1460
|
|
65
65
|
westpa/core/reweight/matrix.py,sha256=219sRxkML1V9niPIndSoRvJAC0fUmpG0PLDKpmfWW-g,5509
|
|
66
|
-
westpa/core/reweight/_reweight.cpython-39-darwin.so,sha256=
|
|
66
|
+
westpa/core/reweight/_reweight.cpython-39-darwin.so,sha256=TV8JlAtEGkUFyjc6EznIBunEQsF_dBo8ScguDUpbr_Q,349520
|
|
67
67
|
westpa/core/reweight/__init__.py,sha256=8goYojsHMcJCZblBC2sc2fcj-NUNVEstbSLswKNlVfg,284
|
|
68
68
|
westpa/core/propagators/__init__.py,sha256=rx_kkeg3Tbb_rI0uhLGCD3OwSYj9QuhxF8QGN3mILrg,2373
|
|
69
|
-
westpa/core/propagators/executable.py,sha256=
|
|
69
|
+
westpa/core/propagators/executable.py,sha256=B9jU6RKkApr5cqH56n49IQ1i_cUcJUMfx6fmBZoWgPk,32071
|
|
70
70
|
westpa/analysis/__init__.py,sha256=CcmVPCB9OSEib0mJ4U-s9v3nrj4h-T_9AGApAbPnn8I,268
|
|
71
71
|
westpa/analysis/core.py,sha256=P_m5-sU1RURAtWQVlV_Y2pgPvwUjyCqFS-E4O3fsD4E,22399
|
|
72
72
|
westpa/analysis/statistics.py,sha256=M3Gj1bOiAu_SA4upR7gENYEOP2gnIEaSOZeGyoIxAc8,789
|
|
73
73
|
westpa/analysis/trajectories.py,sha256=jyrbbKOVyZ3GjHQushDS_G8C4IRXlUmxa-WzmEEVGwc,12878
|
|
74
74
|
westpa/mclib/__init__.py,sha256=NskP81wKw-tHTniyJ8QbgKAHah5JdpCrnPKJo1T-nLw,11513
|
|
75
|
-
westpa/mclib/_mclib.cpython-39-darwin.so,sha256=
|
|
75
|
+
westpa/mclib/_mclib.cpython-39-darwin.so,sha256=hwCYgQTTKH1MmdQd6A-ukbmwbv3MdVz0k1JfM3CIagI,271888
|
|
76
76
|
westpa/mclib/__main__.py,sha256=cKqfE9koMcrHkslEPpFISA4Eblwl0mllaxn7pFeyX1A,881
|
|
77
77
|
westpa/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
78
78
|
westpa/cli/tools/w_direct.py,sha256=5Z9eQpvpKM-40XdiI0L3t0O3jpjMx7tk8ndYAaJxvrc,22361
|
|
@@ -80,7 +80,7 @@ westpa/cli/tools/w_dumpsegs.py,sha256=uv0WxvKGauyW6VT3zGyALUXVqSXwDrhwbF3ZVSJV9M
|
|
|
80
80
|
westpa/cli/tools/w_postanalysis_matrix.py,sha256=owHtPNcD2RF33C-3oq4LhNWG6M-_nWCGenrNtV574Dc,3227
|
|
81
81
|
westpa/cli/tools/w_select.py,sha256=cNtuIgv8-P7bPyHDJmbrVwSasMFth5ULVTpz2QjVdfU,9717
|
|
82
82
|
westpa/cli/tools/ploterr.py,sha256=Fm4Yoexm2c1H5_H8t2GMsXncHcJAltWpp0c5XMnDpW0,18906
|
|
83
|
-
westpa/cli/tools/w_multi_west.py,sha256=
|
|
83
|
+
westpa/cli/tools/w_multi_west.py,sha256=Vye1OTiyFHaUkPKMxyOediE1_6hq-EMp7SeoaVO7rwk,20049
|
|
84
84
|
westpa/cli/tools/w_ntop.py,sha256=6wiGWA5ZUy9RU4cOy6J0qSXbHO5uScF19w9N9AmiktQ,8204
|
|
85
85
|
westpa/cli/tools/w_kinavg.py,sha256=MjmomiIWoBnjfm8Pq-93y6DoCq26DbCxdJ5bcP-25Ys,4324
|
|
86
86
|
westpa/cli/tools/w_eddist.py,sha256=pAZVIOSgMiJxo7f6AXES_UhAwMaeK4S5Tl58O21hB-w,20056
|
|
@@ -105,7 +105,7 @@ westpa/cli/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
|
105
105
|
westpa/cli/core/w_truncate.py,sha256=-CHFOBr4NAZwGQ8-O5F7B0dPowpnFpm-mF9Us1gBgfo,1654
|
|
106
106
|
westpa/cli/core/w_init.py,sha256=V_CvlAuq8flg-zUO01sbMGYkLqrEDD4DU9sV90bYFus,8793
|
|
107
107
|
westpa/cli/core/w_succ.py,sha256=ZK1MHHu7t53VdBrRgJUe7b1R8DnhMKPjHOqbbOjC_As,3074
|
|
108
|
-
westpa/trajtree/_trajtree.cpython-39-darwin.so,sha256=
|
|
108
|
+
westpa/trajtree/_trajtree.cpython-39-darwin.so,sha256=wSDFa4XnKpQdZtuNAZGAK-IezvI10dxTkofAXeJsALU,154568
|
|
109
109
|
westpa/trajtree/__init__.py,sha256=K64Ok5bUP-fXo1H2rigJqxCnm-U23tJlRngNOnzR3gs,96
|
|
110
110
|
westpa/trajtree/trajtree.py,sha256=sLf4kTi0QyvFdbSR__YcPwOR2wcOxtlkC4IPUFcq-9M,4497
|
|
111
111
|
westpa/oldtools/files.py,sha256=JmLtZqxD88cybEHcOU6kodAeOJYxylpYFl4OQqU13Hs,944
|
|
@@ -118,7 +118,7 @@ westpa/oldtools/aframe/atool.py,sha256=5_ZkivLChU1wMaEvI-F7i-huMRYg2Dy8AH36eivWI
|
|
|
118
118
|
westpa/oldtools/aframe/plotting.py,sha256=nyAPzSGQPfjcA7d-nDAsi2ewr3aFenJDHeVkSElDixo,2421
|
|
119
119
|
westpa/oldtools/aframe/trajwalker.py,sha256=mXkLMg3aIBo76fogCXZs3xNwpTc9Y6qfHNIEhYRIERg,5540
|
|
120
120
|
westpa/oldtools/aframe/__init__.py,sha256=1MMuHYaL790Y1bh7NU3gweTYRIr2xgR1U9bmNrJVrSM,1047
|
|
121
|
-
westpa/oldtools/aframe/data_reader.py,sha256
|
|
121
|
+
westpa/oldtools/aframe/data_reader.py,sha256=nuIkR-vFRW_stcXwcjMSZI1RO73By-x-phfTrlD73Jc,20927
|
|
122
122
|
westpa/oldtools/aframe/transitions.py,sha256=3cQan9ju2s5hW9KvYs38kuKvSh5RjAsvHlvaY2eOZ_M,18542
|
|
123
123
|
westpa/oldtools/aframe/base_mixin.py,sha256=OAK5NfVfwdPxvFzhxxT_oEnFKR_5s0NRoqTVA6G1gXY,654
|
|
124
124
|
westpa/oldtools/aframe/iter_range.py,sha256=HFODveMwtKAbHXpbt8bII7edVy8RqwC-QPlLXLX66dU,8465
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@@ -135,16 +135,16 @@ westpa/work_managers/processes.py,sha256=zcHKanvTYnCNuU46F4EpqaRdj1XjtCe6ltw3g3b
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westpa/work_managers/threads.py,sha256=-Xktf-LPqVRf7sMW7Yqdc_ayO_4x_f0zA9iZS_G-fuI,2335
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westpa/work_managers/mpi.py,sha256=ArxswC1CMgBc5rZ1nr4cQQvwHlCWAcN-BkZt8ilhSgk,9511
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westpa/work_managers/serial.py,sha256=fo5Sql5wO4PdFy2VbcssWy0G459MJwKjRWkklK6nDxo,694
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westpa/work_managers/environment.py,sha256=
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westpa/work_managers/environment.py,sha256=WexOkNB8ovvByB78kXB6uzm7nlE-fIB42IpfLIvZzoI,4948
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westpa/work_managers/zeromq/worker.py,sha256=YE-iU7_yOiVIu8Aal5j-qrq8sNsG4JSVtRJAiFjnBcw,12940
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westpa/work_managers/zeromq/__init__.py,sha256=rrl4YbEaZr2AiEBTMlhvEFH83dBlAwWR_1L8UkqoJVs,438
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westpa/work_managers/zeromq/core.py,sha256=K3Iyrz5u2Dy-GgZFL3ZXDN2iaaLm7qL-A3cm4PdBiF8,22907
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westpa/work_managers/zeromq/work_manager.py,sha256=UB_WvnejDRVi1ZU2QWpP9uzhnccOH7b3qHgU-wSstTY,22425
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westpa/work_managers/zeromq/node.py,sha256=
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westpa-2022.
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westpa-2022.
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westpa-2022.
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westpa-2022.
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westpa/work_managers/zeromq/node.py,sha256=CeoJhXVqrZxrV3lMnDtm3LNkGFxjS4dr3E6wd7ZQRTE,4877
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westpa-2022.8.dist-info/RECORD,,
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westpa-2022.8.dist-info/LICENSE,sha256=I2wUldIRJmflTYUxmSiITSZEKvlovlMPrE3JU5IslkY,1074
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westpa-2022.8.dist-info/AUTHORS,sha256=YMi91-Fs-vFgZKUaItfh20uXthT9oe2Kq6CQXmqMGqg,671
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westpa-2022.8.dist-info/WHEEL,sha256=wEvD9HODgqXG21zAA07x3Gh0qpNEHOQ7qzjMqXvopac,109
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westpa-2022.8.dist-info/entry_points.txt,sha256=0Ym8meKTdYbUEMtUHF_4zaZP__4ldfFnoYXyYlKRB6s,1428
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westpa-2022.8.dist-info/top_level.txt,sha256=otaLnQtwo9jKCJmja4iOOsOVDThUvPfjJaeLrgGEhlE,7
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westpa-2022.8.dist-info/METADATA,sha256=mr5Ug2g18LvcWV8tCqcsU9e4990CspZUnMexqT9O5bE,7577
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File without changes
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File without changes
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