westpa 2022.11__cp310-cp310-macosx_11_0_arm64.whl → 2022.12__cp310-cp310-macosx_11_0_arm64.whl

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Files changed (37) hide show
  1. westpa/_version.py +3 -3
  2. westpa/cli/tools/w_assign.py +4 -4
  3. westpa/cli/tools/w_fluxanl.py +1 -3
  4. westpa/cli/tools/w_ntop.py +2 -2
  5. westpa/cli/tools/w_red.py +7 -2
  6. westpa/core/binning/_assign.cpython-310-darwin.so +0 -0
  7. westpa/core/binning/assign.py +11 -5
  8. westpa/core/binning/mab.py +352 -273
  9. westpa/core/data_manager.py +3 -3
  10. westpa/core/h5io.py +2 -2
  11. westpa/core/kinetics/_kinetics.cpython-310-darwin.so +0 -0
  12. westpa/core/kinetics/matrates.py +1 -1
  13. westpa/core/propagators/executable.py +10 -6
  14. westpa/core/reweight/_reweight.cpython-310-darwin.so +0 -0
  15. westpa/core/sim_manager.py +9 -4
  16. westpa/core/states.py +7 -7
  17. westpa/core/we_driver.py +4 -2
  18. westpa/fasthist/_fasthist.cpython-310-darwin.so +0 -0
  19. westpa/mclib/__init__.py +10 -3
  20. westpa/mclib/_mclib.cpython-310-darwin.so +0 -0
  21. westpa/oldtools/aframe/mcbs.py +9 -2
  22. westpa/oldtools/cmds/w_ttimes.py +4 -1
  23. westpa/oldtools/stats/edfs.py +1 -1
  24. westpa/oldtools/stats/mcbs.py +9 -2
  25. westpa/trajtree/_trajtree.cpython-310-darwin.so +0 -0
  26. westpa/westext/stringmethod/string_method.py +1 -1
  27. westpa/westext/weed/ProbAdjustEquil.py +2 -2
  28. westpa/westext/weed/weed_driver.py +10 -0
  29. westpa/westext/wess/wess_driver.py +10 -0
  30. {westpa-2022.11.dist-info → westpa-2022.12.dist-info}/AUTHORS +8 -8
  31. {westpa-2022.11.dist-info → westpa-2022.12.dist-info}/METADATA +31 -21
  32. {westpa-2022.11.dist-info → westpa-2022.12.dist-info}/RECORD +36 -37
  33. {westpa-2022.11.dist-info → westpa-2022.12.dist-info}/WHEEL +2 -1
  34. westpa/fasthist/__main__.py +0 -110
  35. {westpa-2022.11.dist-info → westpa-2022.12.dist-info}/LICENSE +0 -0
  36. {westpa-2022.11.dist-info → westpa-2022.12.dist-info}/entry_points.txt +0 -0
  37. {westpa-2022.11.dist-info → westpa-2022.12.dist-info}/top_level.txt +0 -0
@@ -1,23 +1,22 @@
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- westpa/_version.py,sha256=tWQgWvkf-J3h5mOX5Li8wSan3MM-AjT2sxSxH6w8Obk,499
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+ westpa/_version.py,sha256=tAUT_kRU38AvSCAATGBiszMeQjkv1JRoR-Uw6k45GNA,499
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  westpa/__init__.py,sha256=xyNfYIcP2ncBLu_foO1NKmJrQh8-uYdwvMuM0HsOG1M,329
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- westpa/fasthist/_fasthist.cpython-310-darwin.so,sha256=CkUWmLogYYoUAnhiBFmIDVmKmhvYgdeVgYD1JsHiilM,242816
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+ westpa/fasthist/_fasthist.cpython-310-darwin.so,sha256=wpHGTJAJgfsYPiq1D1lwz5MIdvR5j28Ejn2BTuqgH9c,242896
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  westpa/fasthist/__init__.py,sha256=oWj0gKEkKfHjGHwkzmpgAxDz55h2ze_sqQVzWSsOP6s,1071
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- westpa/fasthist/__main__.py,sha256=7XCBZvrKbBG3KEuQMpZD0jXa3vVMEVfZJTG8MmdbsrM,3902
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  westpa/westext/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- westpa/westext/weed/weed_driver.py,sha256=RizxcNDbEcL5cybOdUw_he7cptrgPD171Su_A9AD-5U,8122
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+ westpa/westext/weed/weed_driver.py,sha256=zYwFNpJnocds3DHOEz0P3WJU0CzfnuKoBSuVM543jKs,8770
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  westpa/westext/weed/UncertMath.py,sha256=RvmETtO4Jr7ti_aaO9jlzTTemqkbtwFljT6Thibn_u8,8768
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  westpa/westext/weed/__init__.py,sha256=LTg42k-I3HbtOWkbWkMHOLA-AK23rFz2ja8zg0qFCvk,451
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  westpa/westext/weed/BinCluster.py,sha256=sx9xzZy_ot54TkFuBrCXzAtdAwT89TQEpj2cexx9lVo,7680
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- westpa/westext/weed/ProbAdjustEquil.py,sha256=eOs1lPB6hjBD44iU8KwVxR1OnaU7Kr0cuxuMVBA5PY0,4218
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+ westpa/westext/weed/ProbAdjustEquil.py,sha256=LEJyaEYPaHkXH6lIxgsSKbqTTtuwaoQ-IiBaR9r7Dlk,4248
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  westpa/westext/adaptvoronoi/adaptVor_driver.py,sha256=xZdBJo-VcX8USB-vpBZWh1qDCMwP-_GMl7V04zaxXN4,8827
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  westpa/westext/adaptvoronoi/__init__.py,sha256=Zk7CiLsUJr3qZwZPKSqOBTOVV8uUvsMXkCbiTflMLHA,88
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- westpa/westext/stringmethod/string_method.py,sha256=C89D7LScQz7CZcB83kHEy3Cc8RagZNLt-rmd6yGq5WU,10415
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+ westpa/westext/stringmethod/string_method.py,sha256=eCmrHn2sPrxpzWyqwkWfimH7F93hjSnkCUAiTsJwX44,10420
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  westpa/westext/stringmethod/string_driver.py,sha256=8z4pEuflwRx0mb-KaRaqEk98cYUd2cvjglXDp4BRNQQ,9369
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  westpa/westext/stringmethod/__init__.py,sha256=1Nk3Uygs6GWr_FJbNH0Rss2DENurIm4WGx86V0qXxy8,310
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  westpa/westext/stringmethod/fourier_fitting.py,sha256=499B3GdZ_pYuFP6kK7ICDnL8StMHSKgrjPX9Xyl1NL8,2256
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  westpa/westext/wess/__init__.py,sha256=5nw6mcZx7eI4szw0v2q8XBusvb0Q2MUCgGKQUx2j0DE,153
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  westpa/westext/wess/ProbAdjust.py,sha256=zc0H_SURBTgxvZFQCFrXeq_pHzRDAG-ejnD6WKQGt5o,3233
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- westpa/westext/wess/wess_driver.py,sha256=3CvHfnfap3TAZGVZvkNODxozcIOEhaobn4YN_ZS-htY,8984
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+ westpa/westext/wess/wess_driver.py,sha256=6-qAfSL8MNrZqIT76ewOjotcJnIVWubfHynHscGEwQE,9632
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  westpa/westext/hamsm_restarting/restart_driver.py,sha256=c5D1I82NVo93_zPcGVtA12c2P10mK_NmkBx06upz-GU,50284
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  westpa/westext/hamsm_restarting/__init__.py,sha256=0vhEngHBLOp89Mp1CVvt9BYDPosrc1nWGZVNicKFuf8,59
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  westpa/westext/hamsm_restarting/example_overrides.py,sha256=3eDzKh_F0yNVm0lN4u0Pnrnj_WR9y4JDXa1-CU7qlbY,1065
@@ -33,46 +32,46 @@ westpa/tools/kinetics_tool.py,sha256=bI73jBmPx5NNjBB-NtosRJ9Br1tmaMPkdlY5qlcTHDA
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  westpa/tools/progress.py,sha256=LimIp3qr7rO7ZLGg2SgieFkzEYk1Sn8BtMAhOLRalnA,499
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  westpa/tools/iter_range.py,sha256=nVQIvqJ9oXOALyQIFsFp_UqMjW5BBQUd1ShZttb20xo,8730
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  westpa/core/systems.py,sha256=pb9YNFUcDhx3Fvhb0NcjlPCdhSUk41IhI0Sqdtr91q8,3693
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- westpa/core/we_driver.py,sha256=uxPTAyhZG28EfBSjKdq1EcMNhcYrvGzVK6t5jYHyKSA,40688
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+ westpa/core/we_driver.py,sha256=O3QzjGGiRjkGJ_sUfM3QWMIBDPRkVMNsq-YurLji-Ow,40761
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  westpa/core/wm_ops.py,sha256=o_pc0BHpfCkbveTO5h76hxjXJpQgw1S-zIzVmM_u-Qc,1529
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  westpa/core/_rc.py,sha256=yPdvgqZKRS10iOWTS_TYma7Y3sdKnCDDFw5AnQvog9s,25508
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  westpa/core/textio.py,sha256=lqohyyyfMTkFvTdQ8V45yUpASiJsWTh42XAG15K63dA,2434
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  westpa/core/extloader.py,sha256=yxyJN-lHo3Zjd6jS6_uhC1fIl52H-h8sbV9zYJfEWGg,2239
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- westpa/core/sim_manager.py,sha256=eeCg5dALUyZ_Rm1eRRBSOpR_0UDBnyQlBvPkWY4IlzE,38653
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+ westpa/core/sim_manager.py,sha256=j09wsKN_OFqgg6aOSX5umOEggzGdvnhw7UGx7gyy6MQ,38963
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  westpa/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- westpa/core/h5io.py,sha256=s3_Rt8ZjvCpumyDMKctQl406dmo8muRiHHd0L34Qtyk,37077
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+ westpa/core/h5io.py,sha256=rRi5bEY9YsdZN_BZcA8hhFqIoxFngqDOv9csexg8eZ4,37075
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  westpa/core/trajectory.py,sha256=DL7rsowKxBc1jwT7FPZFlfCWKuwagttZxd3SPgxZKU0,10913
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  westpa/core/segment.py,sha256=Gd_5htIZ6xKxxCms9XMtJncehGvMVxZeNdy4drxrnpc,4421
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  westpa/core/progress.py,sha256=tEDDn-JPY6ZNzYqyrdgA7peo7pDu8kOMvqfyiHWUgps,6753
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- westpa/core/data_manager.py,sha256=fHgdILXZoiDyrDv34DjZqS5YyqqG6bbnUBLouqYwOFQ,71924
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- westpa/core/states.py,sha256=umsdgSrYjt2vjw-1kQeiILWmureOBmBaOgg0nQxUVmA,13318
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+ westpa/core/data_manager.py,sha256=sA1Kpcd1iYFeQh0oviG455w9oKxpjjFEDRcNqh4Cgq8,71985
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+ westpa/core/states.py,sha256=eVEqpQTMyoKmNwz3DFD2S0wM_4vVayl35wbKK3JUJ0Q,13327
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  westpa/core/yamlcfg.py,sha256=B78OEr1n_sIkW6kDzl3FO63tiugaT-1VutAgLxU0i7A,12696
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- westpa/core/kinetics/matrates.py,sha256=1sf7L6ojLE8yT2sFfgeB8eqgjMHdMK2O_Xgyz_RjCzc,5554
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+ westpa/core/kinetics/matrates.py,sha256=3kpmV8GJ0mv-8Iy_IdUCfo-gWOGtMzUWHmkibYRgyzs,5569
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  westpa/core/kinetics/events.py,sha256=VqYBN5rVOf3hAYUA6xQ6UN7GP6tVgRFIoP69tfGhkTo,6511
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  westpa/core/kinetics/__init__.py,sha256=djtiki7X5-IEzwjwswbdgrolwUIzVAHKxCiI5B3WH28,510
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- westpa/core/kinetics/_kinetics.cpython-310-darwin.so,sha256=1h3PFO4FxXW4aNxTCCg7uSjoIZlYit6GMoDQERLaXwg,351456
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+ westpa/core/kinetics/_kinetics.cpython-310-darwin.so,sha256=Ga2iy5uYIFBxV9GuQ-jLUCBBtp5kpNSP6XjZqSHrXmM,351520
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  westpa/core/kinetics/rate_averaging.py,sha256=gIKDXBAOSDI6KythepoC4QipUPksTRBc9zbM7DRtwo4,10300
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  westpa/core/binning/binless_driver.py,sha256=T5qWpLnjxCS9RdKeWf7eVCC_s6TQFDENL7X3VG6JIYo,2231
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- westpa/core/binning/_assign.cpython-310-darwin.so,sha256=pvqQfNBjJFunmcF0DUdx_g02ATN8fgaqTVfuuoeG4Ik,258256
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+ westpa/core/binning/_assign.cpython-310-darwin.so,sha256=iB2kiSVQrprxbafptdJCLkqNZ2aWqE-IA89YGO_Pu_A,258336
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- westpa/core/binning/assign.py,sha256=e1YWyU3R12evLAoIWUrEvv3uvdKFo4u_mfKGDcK5AVU,18028
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+ westpa/core/binning/assign.py,sha256=_DrgybCG0rFP4WWy9-oAKYNDuC_nd4feaHzsVehvgc4,18146
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- westpa/core/binning/mab.py,sha256=X7L1jx--nNJTNA-PeJGDpwSa2PDMoMb4OtLpjffXQ4A,16046
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+ westpa/core/binning/mab.py,sha256=_aMwRVdm9HnDFc4l4qI_CtXU0HnnIDfac9f8iDrLKBE,20304
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  westpa/core/binning/bins.py,sha256=WDj7DNX3MTVkRvkgAooa9G8VThxw32uIfMTuk9sS194,1460
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- westpa/core/reweight/_reweight.cpython-310-darwin.so,sha256=fcfeMWxRX8xqVZPenPY-c3GTJmQJH-O55eW1CZ1fTqc,293888
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+ westpa/core/reweight/_reweight.cpython-310-darwin.so,sha256=7UzHk1LQy0LN5o107tAdQEHFWm1L-HJvVy6xmjJSF-E,293952
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- westpa/core/propagators/executable.py,sha256=yYextknWycTtyUTFMNyIt6EeLblMdWOJM7YJ4FsZ93E,32203
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+ westpa/core/propagators/executable.py,sha256=z4RD23gMx6Ux5_nzkpzct77q2rTru0owUv5YrCX5mjE,32448
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- westpa/mclib/__init__.py,sha256=NskP81wKw-tHTniyJ8QbgKAHah5JdpCrnPKJo1T-nLw,11513
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- westpa/mclib/_mclib.cpython-310-darwin.so,sha256=ACzivXXNAOtk1aRbKoXAMcY2pw8QSGm3I8pX615qm3g,241104
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+ westpa/mclib/__init__.py,sha256=ubgbVe8b31xxZiYv1CeaCuxCfVOWjCtPib4dL-Sx52g,11651
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+ westpa/mclib/_mclib.cpython-310-darwin.so,sha256=8dcns78ijMTXIUW2oOCapoEit_sgrgnO0v9wA6OmrWk,257872
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@@ -81,17 +80,17 @@ westpa/cli/tools/w_postanalysis_matrix.py,sha256=owHtPNcD2RF33C-3oq4LhNWG6M-_nWC
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- westpa/cli/tools/w_ntop.py,sha256=6wiGWA5ZUy9RU4cOy6J0qSXbHO5uScF19w9N9AmiktQ,8204
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+ westpa/cli/tools/w_ntop.py,sha256=9Mmz0ZeIyP55N6stuO3FSpFg3Whp4Cu4pmkDEoBGmIk,8234
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- westpa/cli/tools/w_assign.py,sha256=Ui-ihjObZcfwIGfISFtHl5n0bAE-0_CfbAOWRY74YUM,25945
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+ westpa/cli/tools/w_red.py,sha256=zDLdQ--DYPu4t1w8YXEfNWMt3grKLg2ezwEwfgnbluA,15421
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+ westpa/cli/tools/w_assign.py,sha256=xDtCWhWzFUsE2kMRRidpuljok5OLFRW7sXMCpD8He0w,25941
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- westpa/cli/tools/w_fluxanl.py,sha256=a_swklwO2BGW4kwyJHz2RdKNyadfBQgV_wTTBcfS1XA,15564
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+ westpa/cli/tools/w_fluxanl.py,sha256=jQ3X2yoBlr0QyVPZjMefTm1jLnhaCGrrIMqdvYlQhRg,15453
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@@ -106,12 +105,12 @@ westpa/cli/core/w_truncate.py,sha256=QdIwMespZD69t3tDkqC1bZRo4CICs18ShlVXYSeFPd8
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+ westpa/trajtree/_trajtree.cpython-310-darwin.so,sha256=6t0K-7OX-nTkLecQNqMc6vqPwSu9mF81gr29cEXGiEY,141888
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  westpa/oldtools/files.py,sha256=JmLtZqxD88cybEHcOU6kodAeOJYxylpYFl4OQqU13Hs,944
112
111
  westpa/oldtools/miscfn.py,sha256=595W28JazmiU9ioDgOKU9ZxtXJue_q-8WcpOKTgkikQ,909
113
112
  westpa/oldtools/__init__.py,sha256=rxAxsQNQMADy5j8xrqW_7Vk3D9ajM7lfDjHaKQHRDTI,62
114
- westpa/oldtools/cmds/w_ttimes.py,sha256=Ny_l_N7k__4eE71h9ugpk_jr6VZbDH3p4lylFzzlZAc,13158
113
+ westpa/oldtools/cmds/w_ttimes.py,sha256=5fmAMwqfEuaLd5FK2eXtzBtAIG2aogjlWzBHCpyCpaM,13243
115
114
  westpa/oldtools/cmds/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
116
115
  westpa/oldtools/aframe/binning.py,sha256=L259HcIn-1Qz1AKUWBXjZ3HFE0odry7OZf-aG070fSE,7565
117
116
  westpa/oldtools/aframe/atool.py,sha256=5_ZkivLChU1wMaEvI-F7i-huMRYg2Dy8AH36eivWI0Y,2185
@@ -122,13 +121,13 @@ westpa/oldtools/aframe/data_reader.py,sha256=nuIkR-vFRW_stcXwcjMSZI1RO73By-x-phf
122
121
  westpa/oldtools/aframe/transitions.py,sha256=3cQan9ju2s5hW9KvYs38kuKvSh5RjAsvHlvaY2eOZ_M,18542
123
122
  westpa/oldtools/aframe/base_mixin.py,sha256=OAK5NfVfwdPxvFzhxxT_oEnFKR_5s0NRoqTVA6G1gXY,654
124
123
  westpa/oldtools/aframe/iter_range.py,sha256=HFODveMwtKAbHXpbt8bII7edVy8RqwC-QPlLXLX66dU,8465
125
- westpa/oldtools/aframe/mcbs.py,sha256=4yczy11EwGd1918A7YmG-xOqLqQYL_U7jIgJ_c1PN8E,5928
124
+ westpa/oldtools/aframe/mcbs.py,sha256=wic8tt9de5Raq2bQYEwCeh4t9M-I44VpURU1EWAgJjM,6062
126
125
  westpa/oldtools/aframe/kinetics.py,sha256=Ohq_B6zbxE6wVX40Ox8FuiGmnrhQ0h4ovvZnJuoul-I,4389
127
126
  westpa/oldtools/aframe/output.py,sha256=SVFF-fXsl12f8mV5xTvy8rm5YIs_p4xDvN8zEYaVnTE,1540
128
127
  westpa/oldtools/stats/__init__.py,sha256=KFbQJ1tD1Dnq6x50hv_g8xlaL45E65cATSg4APIzweY,119
129
- westpa/oldtools/stats/edfs.py,sha256=QULNqXNTiHudUgCkDlII8B_Jyr7sCTq0Fc9PWwKmgkc,4081
128
+ westpa/oldtools/stats/edfs.py,sha256=qwgSVoNk_UnnPi1SvXnrQQR28cS-irZvwCErbXdWW1I,4096
130
129
  westpa/oldtools/stats/accumulator.py,sha256=AZ1RshALSHjdhfDXidE5_yHaDEsdDXfSzsmogECCoJ8,1137
131
- westpa/oldtools/stats/mcbs.py,sha256=yMgvdEu70j-h1_kTqYakypFV3s7AtWqJioWuy2bLUFI,3387
130
+ westpa/oldtools/stats/mcbs.py,sha256=gPWSpdg-WKIu1UGkyES4Bs2_OkCcI3HW2jfDkQJ1Oss,3521
132
131
  westpa/work_managers/__init__.py,sha256=nHbI9PmRosOeZ11gCHIwpv9qwgXbwUnGt9vIZ0nLtOg,1670
133
132
  westpa/work_managers/core.py,sha256=NVe9XhcfizBzXjkymgeo0xLzNLP0tP6-VoTE0uxu91U,15061
134
133
  westpa/work_managers/processes.py,sha256=iZRaOW7DEuggDcb92D0goGAbLvYjkSwamdpADx2zooM,6960
@@ -141,10 +140,10 @@ westpa/work_managers/zeromq/__init__.py,sha256=rrl4YbEaZr2AiEBTMlhvEFH83dBlAwWR_
141
140
  westpa/work_managers/zeromq/core.py,sha256=K3Iyrz5u2Dy-GgZFL3ZXDN2iaaLm7qL-A3cm4PdBiF8,22907
142
141
  westpa/work_managers/zeromq/work_manager.py,sha256=UB_WvnejDRVi1ZU2QWpP9uzhnccOH7b3qHgU-wSstTY,22425
143
142
  westpa/work_managers/zeromq/node.py,sha256=CeoJhXVqrZxrV3lMnDtm3LNkGFxjS4dr3E6wd7ZQRTE,4877
144
- westpa-2022.11.dist-info/RECORD,,
145
- westpa-2022.11.dist-info/LICENSE,sha256=I2wUldIRJmflTYUxmSiITSZEKvlovlMPrE3JU5IslkY,1074
146
- westpa-2022.11.dist-info/AUTHORS,sha256=YMi91-Fs-vFgZKUaItfh20uXthT9oe2Kq6CQXmqMGqg,671
147
- westpa-2022.11.dist-info/WHEEL,sha256=fhwHlejkiGLnY3KdFgKqbEwpdvwqEUgg6NmPY5InEX0,109
148
- westpa-2022.11.dist-info/entry_points.txt,sha256=0Ym8meKTdYbUEMtUHF_4zaZP__4ldfFnoYXyYlKRB6s,1428
149
- westpa-2022.11.dist-info/top_level.txt,sha256=otaLnQtwo9jKCJmja4iOOsOVDThUvPfjJaeLrgGEhlE,7
150
- westpa-2022.11.dist-info/METADATA,sha256=ZNUuNk0-tU-eHAT3nKAXC1KnqXbsj-P-vuEiaFXy2ZA,7563
143
+ westpa-2022.12.dist-info/RECORD,,
144
+ westpa-2022.12.dist-info/LICENSE,sha256=I2wUldIRJmflTYUxmSiITSZEKvlovlMPrE3JU5IslkY,1074
145
+ westpa-2022.12.dist-info/AUTHORS,sha256=ArOZQ8ltOK_8MVF2e7KsoLQCcb5pzKuU7TsMp1rrO8o,666
146
+ westpa-2022.12.dist-info/WHEEL,sha256=nFUG2eIJ1aL_VwX0NYHYLcxES0g_RBXH5h4nlm_oREc,136
147
+ westpa-2022.12.dist-info/entry_points.txt,sha256=0Ym8meKTdYbUEMtUHF_4zaZP__4ldfFnoYXyYlKRB6s,1428
148
+ westpa-2022.12.dist-info/top_level.txt,sha256=otaLnQtwo9jKCJmja4iOOsOVDThUvPfjJaeLrgGEhlE,7
149
+ westpa-2022.12.dist-info/METADATA,sha256=Ez6AK9J-B6NujAftGF5RIptGMP9iI0_yS23LuM2_nBc,7815
@@ -1,5 +1,6 @@
1
1
  Wheel-Version: 1.0
2
- Generator: setuptools (70.2.0)
2
+ Generator: setuptools (75.8.2)
3
3
  Root-Is-Purelib: false
4
4
  Tag: cp310-cp310-macosx_11_0_arm64
5
+ Generator: delocate 0.13.0
5
6
 
@@ -1,110 +0,0 @@
1
- '''
2
- Created on Jun 25, 2013
3
-
4
- @author: mzwier
5
- '''
6
-
7
- import numpy
8
- from fasthist import histnd
9
-
10
-
11
- def _test_double(npts=1024 * 1024, loops=3):
12
- from time import time
13
-
14
- mine_times = [None] * loops
15
- theirs_times = [None] * loops
16
-
17
- # though 1.0 should be sufficient, weirdness in the boundary conditions
18
- # for numpy.digitize appears to introduce a discrepancy, so throw something
19
- # greater than 1.0 in for good measure
20
- binbounds = [[0, 0.5, 1, 1.1] for x in range(3)]
21
- weights = numpy.random.rand(npts)
22
- # weights = numpy.ones((npts,), dtype=numpy.float64)
23
- for n in range(loops):
24
- testdat = numpy.random.rand(npts, 3)
25
- mstart = time()
26
- mine = histnd(testdat, binbounds, weights=weights)
27
- mstop = time()
28
- tstart = time()
29
- theirs = numpy.histogramdd(testdat, binbounds, weights=weights)[0]
30
- tstop = time()
31
- mine_times[n] = mstop - mstart
32
- theirs_times[n] = tstop - tstart
33
- print(mine)
34
- print(theirs)
35
- errsum = numpy.abs(mine - theirs).sum()
36
- errsum_per_item = errsum / npts
37
- rel_err = errsum / numpy.abs(weights).sum()
38
- print('sum of the absolute errors: {} ({} relative, {} per entry)'.format(errsum, rel_err, errsum_per_item))
39
-
40
- print('mine, best of {}: {}'.format(loops, min(mine_times)))
41
- print('theirs, best of {}: {}'.format(loops, min(theirs_times)))
42
-
43
-
44
- def _test_float(npts=1024 * 1024, ndim=3, loops=3):
45
- from time import time
46
-
47
- mine_times = [None] * loops
48
- theirs_times = [None] * loops
49
-
50
- binbounds = [[0, 0.5, 1, 1.1] for x in range(ndim)]
51
- # weights = numpy.random.rand(npts)
52
- weights = numpy.ones((npts,), dtype=numpy.float64)
53
- for n in range(loops):
54
- testdat = numpy.require(numpy.random.rand(npts, ndim), numpy.float32)
55
- print(testdat)
56
- mstart = time()
57
- mine = histnd(testdat, binbounds, weights=weights)
58
- mstop = time()
59
- tstart = time()
60
- theirs = numpy.histogramdd(testdat, binbounds, weights=weights)[0]
61
- tstop = time()
62
- mine_times[n] = mstop - mstart
63
- theirs_times[n] = tstop - tstart
64
- print(mine)
65
- print(theirs)
66
- errsum = numpy.abs(mine - theirs).sum()
67
- errsum_per_item = errsum / npts
68
- rel_err = errsum / numpy.abs(weights).sum()
69
- print('sum of the absolute errors: {} ({} relative, {} per entry)'.format(errsum, rel_err, errsum_per_item))
70
-
71
- print('mine, best of {}: {}'.format(loops, min(mine_times)))
72
- print('theirs, best of {}: {}'.format(loops, min(theirs_times)))
73
-
74
-
75
- def _test_uint(npts=1024 * 1024, ndim=3, loops=3):
76
- from time import time
77
-
78
- mine_times = [None] * loops
79
- theirs_times = [None] * loops
80
-
81
- binbounds = [[0, 1, 2, 3, 4] for x in range(ndim)]
82
- # weights = numpy.random.rand(npts)
83
- weights = numpy.ones((npts,), dtype=numpy.float64)
84
- print('binbounds: {}'.format(binbounds))
85
- print('weights')
86
- print(weights)
87
- for n in range(loops):
88
- testdat = numpy.require(numpy.random.randint(0, 4, size=(npts, ndim)), numpy.uint16)
89
- print('test data')
90
- print(testdat)
91
- mstart = time()
92
- mine = histnd(testdat, binbounds, weights=weights)
93
- mstop = time()
94
- tstart = time()
95
- theirs = numpy.histogramdd(testdat, binbounds, weights=weights)[0]
96
- tstop = time()
97
- mine_times[n] = mstop - mstart
98
- theirs_times[n] = tstop - tstart
99
- print(mine)
100
- print(theirs)
101
- errsum = numpy.abs(mine - theirs).sum()
102
- errsum_per_item = errsum / npts
103
- rel_err = errsum / numpy.abs(weights).sum()
104
- print('sum of the absolute errors: {} ({} relative, {} per entry)'.format(errsum, rel_err, errsum_per_item))
105
-
106
- print('mine, best of {}: {}'.format(loops, min(mine_times)))
107
- print('theirs, best of {}: {}'.format(loops, min(theirs_times)))
108
-
109
-
110
- _test_float(npts=1024 * 1024, ndim=1)