wds-client 0.7.0__py3-none-any.whl → 0.9.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- wds_client/__init__.py +8 -10
- wds_client/api/__init__.py +1 -2
- wds_client/api/capabilities_api.py +237 -102
- wds_client/api/cloning_api.py +782 -329
- wds_client/api/general_wds_information_api.py +463 -191
- wds_client/api/import_api.py +288 -127
- wds_client/api/instances_api.py +783 -333
- wds_client/api/job_api.py +518 -215
- wds_client/api/records_api.py +2512 -1089
- wds_client/api/schema_api.py +1450 -626
- wds_client/api_client.py +414 -310
- wds_client/api_response.py +21 -0
- wds_client/configuration.py +110 -53
- wds_client/exceptions.py +99 -20
- wds_client/models/__init__.py +4 -8
- wds_client/models/app.py +68 -125
- wds_client/models/attribute_data_type.py +31 -94
- wds_client/models/attribute_schema.py +71 -157
- wds_client/models/attribute_schema_update.py +69 -127
- wds_client/models/backup_job.py +96 -298
- wds_client/models/backup_response.py +70 -157
- wds_client/models/backup_restore_request.py +68 -129
- wds_client/models/batch_operation.py +83 -137
- wds_client/models/batch_record_request.py +70 -160
- wds_client/models/batch_response.py +68 -127
- wds_client/models/build.py +79 -207
- wds_client/models/capabilities.py +83 -103
- wds_client/models/clone_job.py +96 -298
- wds_client/models/clone_response.py +68 -129
- wds_client/models/commit.py +69 -125
- wds_client/models/error_response.py +78 -222
- wds_client/models/generic_job.py +102 -334
- wds_client/models/git.py +76 -129
- wds_client/models/import_request.py +77 -165
- wds_client/models/job.py +87 -243
- wds_client/models/job_v1.py +97 -277
- wds_client/models/record_query_response.py +86 -162
- wds_client/models/record_request.py +60 -96
- wds_client/models/record_response.py +70 -160
- wds_client/models/record_type_schema.py +84 -191
- wds_client/models/search_filter.py +60 -95
- wds_client/models/search_request.py +84 -220
- wds_client/models/search_sort_direction.py +17 -80
- wds_client/models/status_response.py +68 -125
- wds_client/models/tsv_upload_response.py +68 -127
- wds_client/models/version_response.py +86 -155
- wds_client/py.typed +0 -0
- wds_client/rest.py +136 -170
- wds_client-0.9.0.dist-info/METADATA +17 -0
- wds_client-0.9.0.dist-info/RECORD +52 -0
- {wds_client-0.7.0.dist-info → wds_client-0.9.0.dist-info}/WHEEL +1 -1
- wds_client/models/backup_job_all_of.py +0 -148
- wds_client/models/clone_job_all_of.py +0 -148
- wds_client/models/generic_job_all_of.py +0 -150
- wds_client/models/inline_object.py +0 -123
- wds_client-0.7.0.dist-info/METADATA +0 -16
- wds_client-0.7.0.dist-info/RECORD +0 -54
- {wds_client-0.7.0.dist-info → wds_client-0.9.0.dist-info}/top_level.txt +0 -0
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"""API response object."""
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from __future__ import annotations
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from typing import Optional, Generic, Mapping, TypeVar
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from pydantic import Field, StrictInt, StrictBytes, BaseModel
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T = TypeVar("T")
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class ApiResponse(BaseModel, Generic[T]):
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"""
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API response object
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"""
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status_code: StrictInt = Field(description="HTTP status code")
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headers: Optional[Mapping[str, str]] = Field(None, description="HTTP headers")
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data: T = Field(description="Deserialized data given the data type")
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raw_data: StrictBytes = Field(description="Raw data (HTTP response body)")
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model_config = {
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"arbitrary_types_allowed": True
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}
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wds_client/configuration.py
CHANGED
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"""
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Workspace Data Service
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This page lists current APIs.
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This page lists current APIs. All v0.2 APIs are subject to change without notice. Changelog at [https://github.com/DataBiosphere/terra-workspace-data-service/releases](https://github.com/DataBiosphere/terra-workspace-data-service/releases)
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The version of the OpenAPI document: v0.2
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Generated by
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"""
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Generated by OpenAPI Generator (https://openapi-generator.tech)
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Do not edit the class manually.
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""" # noqa: E501
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from __future__ import absolute_import
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import copy
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import logging
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from logging import FileHandler
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import multiprocessing
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import sys
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from typing import Optional
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import urllib3
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import
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from six.moves import http_client as httplib
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import http.client as httplib
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JSON_SCHEMA_VALIDATION_KEYWORDS = {
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'multipleOf', 'maximum', 'exclusiveMaximum',
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'minimum', 'exclusiveMinimum', 'maxLength',
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'minLength', 'pattern', 'maxItems', 'minItems'
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}
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class Configuration:
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"""This class contains various settings of the API client.
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:param host: Base url
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:param host: Base url.
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:param api_key: Dict to store API key(s).
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Each entry in the dict specifies an API key.
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The dict key is the name of the security scheme in the OAS specification.
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The dict value is the API key secret.
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:param api_key_prefix: Dict to store API prefix (e.g. Bearer)
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:param api_key_prefix: Dict to store API prefix (e.g. Bearer).
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The dict key is the name of the security scheme in the OAS specification.
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The dict value is an API key prefix when generating the auth data.
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:param username: Username for HTTP basic authentication
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:param password: Password for HTTP basic authentication
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:param
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:param username: Username for HTTP basic authentication.
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:param password: Password for HTTP basic authentication.
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:param access_token: Access token.
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:param server_index: Index to servers configuration.
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:param server_variables: Mapping with string values to replace variables in
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templated server configuration. The validation of enums is performed for
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variables with defined enum values before.
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:param server_operation_index: Mapping from operation ID to an index to server
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configuration.
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:param server_operation_variables: Mapping from operation ID to a mapping with
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string values to replace variables in templated server configuration.
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The validation of enums is performed for variables with defined enum
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values before.
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:param ssl_ca_cert: str - the path to a file of concatenated CA certificates
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in PEM format.
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:Example:
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"""
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_default = None
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def __init__(self, host=
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def __init__(self, host=None,
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api_key=None, api_key_prefix=None,
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username=None, password=None,
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access_token=None,
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server_index=None, server_variables=None,
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server_operation_index=None, server_operation_variables=None,
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ssl_ca_cert=None,
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) -> None:
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"""Constructor
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"""
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self.
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self._base_path = "http://localhost" if host is None else host
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"""Default Base url
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"""
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self.server_index = 0 if server_index is None and host is None else server_index
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self.server_operation_index = server_operation_index or {}
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"""Default server index
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"""
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self.server_variables = server_variables or {}
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self.server_operation_variables = server_operation_variables or {}
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"""Default server variables
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"""
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self.temp_folder_path = None
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"""Temp file folder for downloading files
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"""
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self.password = password
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"""Password for HTTP basic authentication
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"""access token for OAuth/Bearer
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self.access_token = access_token
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"""Access token
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"""
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self.logger = {}
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"""Logging Settings
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"""Log stream handler
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"""
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self.logger_file_handler: Optional[FileHandler] = None
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"""Log file handler
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"""
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self.logger_file = None
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Set this to false to skip verifying SSL certificate when calling API
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from https server.
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"""
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self.ssl_ca_cert =
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self.ssl_ca_cert = ssl_ca_cert
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"""Set this to customize the certificate file to verify the peer.
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"""
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self.cert_file = None
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"""Set this to True/False to enable/disable SSL hostname verification.
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"""
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self.tls_server_name = None
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"""SSL/TLS Server Name Indication (SNI)
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Set this to the SNI value expected by the server.
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"""
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self.connection_pool_maxsize = multiprocessing.cpu_count() * 5
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"""urllib3 connection pool's maximum number of connections saved
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"""
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self.proxy: Optional[str] = None
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"""Proxy URL
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"""
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#
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# Enable client side validation
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self.socket_options = None
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"""Options to pass down to the underlying urllib3 socket
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"""
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self.datetime_format = "%Y-%m-%dT%H:%M:%S.%f%z"
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"""datetime format
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"""
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"""date format
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"""
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def __deepcopy__(self, memo):
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cls = self.__class__
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result = cls.__new__(cls)
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:param default: object of Configuration
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"""
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cls._default = default
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@classmethod
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def get_default_copy(cls):
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"""
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"""Deprecated. Please use `get_default` instead.
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Deprecated. Please use `get_default` instead.
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:return: The configuration object.
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"""
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return cls.get_default()
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@classmethod
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def get_default(cls):
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"""Return the default configuration.
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configuration
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configuration.
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:return: The configuration object.
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"""
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cls._default = Configuration()
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return cls._default
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@property
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def logger_file(self):
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logger.setLevel(logging.DEBUG)
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self.__logger_format = value
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def get_api_key_with_prefix(self, identifier):
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def get_api_key_with_prefix(self, identifier, alias=None):
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"""Gets API key (with prefix if set).
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:param identifier: The identifier of apiKey.
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:param alias: The alternative identifier of apiKey.
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:return: The token for api key authentication.
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"""
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self.refresh_api_key_hook(self)
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key = self.api_key.get(identifier, self.api_key.get(alias) if alias is not None else None)
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if key:
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prefix = self.api_key_prefix.get(identifier)
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format(env=sys.platform, pyversion=sys.version)
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def get_host_settings(self):
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"""
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return [
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'url': "
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'url': "",
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'description': "No description provided",
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}
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]
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def get_host_from_settings(self, index, variables=None, servers=None):
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"""Gets host URL based on the index and variables
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:param index: array index of the host settings
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:param variables: hash of variable and the corresponding value
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:param servers: an array of host settings or None
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:return: URL based on host settings
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"""
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if index is None:
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variables = {} if variables is None else variables
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servers = self.get_host_settings() if servers is None else servers
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# go through variables and replace placeholders
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for variable_name, variable in server
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for variable_name, variable in server.get('variables', {}).items():
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used_value = variables.get(
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variable_name, variable['default_value'])
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url = url.replace("{" + variable_name + "}", used_value)
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return url
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@property
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def host(self):
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"""Return generated host."""
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return self.get_host_from_settings(self.server_index, variables=self.server_variables)
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@host.setter
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def host(self, value):
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self._base_path = value
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self.server_index = None
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wds_client/exceptions.py
CHANGED
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"""
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Workspace Data Service
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This page lists current APIs.
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This page lists current APIs. All v0.2 APIs are subject to change without notice. Changelog at [https://github.com/DataBiosphere/terra-workspace-data-service/releases](https://github.com/DataBiosphere/terra-workspace-data-service/releases)
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The version of the OpenAPI document: v0.2
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Generated by
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"""
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Generated by OpenAPI Generator (https://openapi-generator.tech)
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""" # noqa: E501
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from typing_extensions import Self
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class ApiTypeError(OpenApiException, TypeError):
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def __init__(self, msg, path_to_item=None, valid_classes=None,
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key_type=None):
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key_type=None) -> None:
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Raised when an attribute reference or assignment fails.
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received_data dict
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class ApiException(OpenApiException):
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self,
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*,
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data: Optional[Any] = None,
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) -> None:
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try:
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except Exception:
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pass
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) -> Self:
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raise NotFoundException(http_resp=http_resp, body=body, data=data)
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raise ServiceException(http_resp=http_resp, body=body, data=data)
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raise ApiException(http_resp=http_resp, body=body, data=data)
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error_message += "HTTP response headers: {0}\n".format(
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self.headers)
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if self.body:
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error_message += "HTTP response body: {0}\n".format(self.body)
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if self.data or self.body:
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error_message += "HTTP response body: {0}\n".format(self.data or self.body)
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class BadRequestException(ApiException):
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pass
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class NotFoundException(ApiException):
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pass
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class UnauthorizedException(ApiException):
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pass
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class ForbiddenException(ApiException):
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pass
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class ServiceException(ApiException):
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pass
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def render_path(path_to_item):
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if isinstance(pth, int):
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wds_client/models/__init__.py
CHANGED
@@ -4,14 +4,14 @@
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"""
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Workspace Data Service
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-
This page lists current APIs.
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+
This page lists current APIs. All v0.2 APIs are subject to change without notice. Changelog at [https://github.com/DataBiosphere/terra-workspace-data-service/releases](https://github.com/DataBiosphere/terra-workspace-data-service/releases)
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The version of the OpenAPI document: v0.2
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-
Generated by
|
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-
"""
|
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+
Generated by OpenAPI Generator (https://openapi-generator.tech)
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12
11
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12
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+
Do not edit the class manually.
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+
""" # noqa: E501
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-
from __future__ import absolute_import
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# import models into model package
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from wds_client.models.app import App
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from wds_client.models.attribute_schema import AttributeSchema
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from wds_client.models.attribute_schema_update import AttributeSchemaUpdate
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from wds_client.models.backup_job import BackupJob
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from wds_client.models.backup_job_all_of import BackupJobAllOf
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from wds_client.models.backup_response import BackupResponse
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from wds_client.models.backup_restore_request import BackupRestoreRequest
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from wds_client.models.clone_job_all_of import CloneJobAllOf
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from wds_client.models.inline_object import InlineObject
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from wds_client.models.job import Job
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from wds_client.models.job_v1 import JobV1
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from wds_client.models.record_query_response import RecordQueryResponse
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