waveorder 3.0.0a0__py3-none-any.whl → 3.0.0a1__py3-none-any.whl

tests/cli_tests/test_reconstruct.py

@@ -219,7 +219,6 @@ def test_cli_apply_inv_tf_mock(tmp_input_path_zarr):
             Path(tmp_config_yml),
             Path(result_path),
             1,
-            1,
         )
         assert result_inv.exit_code == 0
 
@@ -254,7 +253,7 @@ def test_cli_apply_inv_tf_output(tmp_input_path_zarr, capsys):
 
         assert result_path.exists()
         captured = capsys.readouterr()
-        assert "submitted" in captured.out
+        assert "Starting reconstruction" in captured.out
 
         # Check scale transformations pass through
         assert input_scale == result_dataset.scale

waveorder/_version.py

@@ -17,5 +17,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '3.0.0a0'
-__version_tuple__ = version_tuple = (3, 0, 0, 'a0')
+__version__ = version = '3.0.0a1'
+__version_tuple__ = version_tuple = (3, 0, 0, 'a1')

waveorder/acq/acquisition_workers.py

@@ -20,10 +20,10 @@ from waveorder.acq.acq_functions import (
 )
 from waveorder.cli import settings
 from waveorder.cli.apply_inverse_transfer_function import (
-    apply_inverse_transfer_function_cli,
+    _apply_inverse_transfer_function_cli,
 )
 from waveorder.cli.compute_transfer_function import (
-    compute_transfer_function_cli,
+    _compute_transfer_function_cli,
 )
 from waveorder.io.utils import add_index_to_path, model_to_yaml, ram_message
 
@@ -306,13 +306,13 @@ class BFAcquisitionWorker(WorkerBase):
         input_data_path = Path(self.latest_out_path) / "0" / "0" / "0"
 
         # TODO: skip if config files match
-        compute_transfer_function_cli(
+        _compute_transfer_function_cli(
             input_position_dirpath=input_data_path,
             config_filepath=self.config_path,
             output_dirpath=transfer_function_path,
         )
 
-        apply_inverse_transfer_function_cli(
+        _apply_inverse_transfer_function_cli(
             input_position_dirpaths=[input_data_path],
             transfer_function_dirpath=transfer_function_path,
             config_filepath=self.config_path,
@@ -587,13 +587,13 @@ class PolarizationAcquisitionWorker(WorkerBase):
         input_data_path = Path(self.latest_out_path) / "0" / "0" / "0"
 
         # TODO: skip if config files match
-        compute_transfer_function_cli(
+        _compute_transfer_function_cli(
             input_position_dirpath=input_data_path,
             config_filepath=self.config_path,
             output_dirpath=transfer_function_path,
         )
 
-        apply_inverse_transfer_function_cli(
+        _apply_inverse_transfer_function_cli(
             input_position_dirpaths=[input_data_path],
             transfer_function_dirpath=transfer_function_path,
             config_filepath=self.config_path,

waveorder/calib/calibration_workers.py

@@ -15,10 +15,10 @@ from qtpy.QtCore import Signal
 from waveorder.calib.Calibration import LC_DEVICE_NAME
 from waveorder.cli import settings
 from waveorder.cli.apply_inverse_transfer_function import (
-    apply_inverse_transfer_function_cli,
+    _apply_inverse_transfer_function_cli,
 )
 from waveorder.cli.compute_transfer_function import (
-    compute_transfer_function_cli,
+    _compute_transfer_function_cli,
 )
 from waveorder.io.core_functions import set_lc_state, snap_and_average
 from waveorder.io.metadata_reader import MetadataReader
@@ -345,13 +345,13 @@ class BackgroundCaptureWorker(
         transfer_function_path = bg_path / "transfer_function.zarr"
         reconstruction_path = bg_path / "reconstruction.zarr"
 
-        compute_transfer_function_cli(
+        _compute_transfer_function_cli(
             input_position_dirpath=input_data_path,
             config_filepath=reconstruction_config_path,
             output_dirpath=transfer_function_path,
         )
 
-        apply_inverse_transfer_function_cli(
+        _apply_inverse_transfer_function_cli(
             input_position_dirpaths=[input_data_path],
             transfer_function_dirpath=transfer_function_path,
             config_filepath=reconstruction_config_path,

waveorder/cli/apply_inverse_transfer_function.py

@@ -1,25 +1,20 @@
 import itertools
-import os
 import warnings
 from functools import partial
 from pathlib import Path
-from typing import Final
 
 import click
 import numpy as np
-import submitit
 import torch
 import torch.multiprocessing as mp
 from iohub import open_ome_zarr
 
 from waveorder.cli import apply_inverse_models, jobs_mgmt
-from waveorder.cli.monitor import monitor_jobs
 from waveorder.cli.parsing import (
     config_filepath,
     input_position_dirpaths,
     output_dirpath,
     processes_option,
-    ram_multiplier,
     transfer_function_dirpath,
 )
 from waveorder.cli.printing import echo_headline, echo_settings
@@ -296,125 +291,48 @@ def apply_inverse_transfer_function_cli(
     transfer_function_dirpath: Path,
     config_filepath: Path,
     output_dirpath: Path,
-    num_processes: int = 1,
-    ram_multiplier: float = 1.0,
-    unique_id: str = "",
+    num_processes,
 ) -> None:
+    # Prepare output store
     output_metadata = get_reconstruction_output_metadata(
         input_position_dirpaths[0], config_filepath
     )
+
     create_empty_hcs_zarr(
         store_path=output_dirpath,
         position_keys=[p.parts[-3:] for p in input_position_dirpaths],
         **output_metadata,
     )
-    # Initialize torch num of threads and interoeration operations
+
+    # Initialize torch threads
     if num_processes > 1:
         torch.set_num_threads(1)
         torch.set_num_interop_threads(1)
 
-    # Estimate resources
-    with open_ome_zarr(input_position_dirpaths[0]) as input_dataset:
-        T, C, Z, Y, X = input_dataset["0"].shape
-
-    settings = utils.yaml_to_model(config_filepath, ReconstructionSettings)
-    gb_ram_request = 0
-    gb_per_element = 4 / 2**30  # bytes_per_float32 / bytes_per_gb
-    voxel_resource_multiplier = 4
-    fourier_resource_multiplier = 32
-    input_memory = Z * Y * X * gb_per_element
-    if settings.birefringence is not None:
-        gb_ram_request += input_memory * voxel_resource_multiplier
-    if settings.phase is not None:
-        gb_ram_request += input_memory * fourier_resource_multiplier
-    if settings.fluorescence is not None:
-        gb_ram_request += input_memory * fourier_resource_multiplier
-
-    gb_ram_request = np.ceil(
-        np.max([1, ram_multiplier * gb_ram_request])
-    ).astype(int)
-    cpu_request = np.min([32, num_processes])
-    num_jobs = len(input_position_dirpaths)
-
-    # Prepare and submit jobs
-    echo_headline(
-        f"Preparing {num_jobs} job{'s, each with' if num_jobs > 1 else ' with'} "
-        f"{cpu_request} CPU{'s' if cpu_request > 1 else ''} and "
-        f"{gb_ram_request} GB of memory per CPU."
-    )
-
-    name_without_ext = os.path.splitext(Path(output_dirpath).name)[0]
-    executor_folder = os.path.join(
-        Path(output_dirpath).parent.absolute(), name_without_ext + "_logs"
-    )
-    executor = submitit.AutoExecutor(folder=Path(executor_folder))
-
-    executor.update_parameters(
-        slurm_array_parallelism=np.min([50, num_jobs]),
-        slurm_mem_per_cpu=f"{gb_ram_request}G",
-        slurm_cpus_per_task=cpu_request,
-        slurm_time=60,
-        slurm_partition="cpu",
-        timeout_min=jobs_mgmt.JOBS_TIMEOUT,
-        # more slurm_*** resource parameters here
-    )
-
-    jobs = []
-    with executor.batch():
-        for input_position_dirpath in input_position_dirpaths:
-            job: Final = executor.submit(
-                apply_inverse_transfer_function_single_position,
-                input_position_dirpath,
-                transfer_function_dirpath,
-                config_filepath,
-                output_dirpath / Path(*input_position_dirpath.parts[-3:]),
-                num_processes,
-                output_metadata["channel_names"],
-            )
-            jobs.append(job)
-    echo_headline(
-        f"{num_jobs} job{'s' if num_jobs > 1 else ''} submitted {'locally' if executor.cluster == 'local' else 'via ' + executor.cluster}."
-    )
-
-    doPrint = True  # CLI prints Job status when used as cmd line
-    if (
-        unique_id != ""
-    ):  # no unique_id means no job submission info being listened to
-        JM.start_client()
-        i = 0
-        for j in jobs:
-            job: submitit.Job = j
-            job_idx: str = job.job_id
-            position = input_position_dirpaths[i]
-            JM.put_Job_in_list(
-                job,
-                unique_id,
-                str(job_idx),
-                position,
-                str(executor.folder.absolute()),
-            )
-            i += 1
-        JM.send_data_thread()
-        JM.set_shorter_timeout()
-        doPrint = False  # CLI printing disabled when using GUI
-
-    monitor_jobs(jobs, input_position_dirpaths, doPrint)
+    # Loop through positions
+    for input_position_dirpath in input_position_dirpaths:
+        apply_inverse_transfer_function_single_position(
+            input_position_dirpath,
+            transfer_function_dirpath,
+            config_filepath,
+            output_dirpath / Path(*input_position_dirpath.parts[-3:]),
+            num_processes,
+            output_metadata["channel_names"],
+        )
 
 
-@click.command()
+@click.command("apply-inv-tf")
 @input_position_dirpaths()
 @transfer_function_dirpath()
 @config_filepath()
 @output_dirpath()
 @processes_option(default=1)
-@ram_multiplier()
-def apply_inv_tf(
+def _apply_inverse_transfer_function_cli(
     input_position_dirpaths: list[Path],
     transfer_function_dirpath: Path,
     config_filepath: Path,
     output_dirpath: Path,
     num_processes,
-    ram_multiplier: float = 1.0,
 ) -> None:
     """
     Apply an inverse transfer function to a dataset using a configuration file.
@@ -434,5 +352,4 @@ def apply_inv_tf(
         config_filepath,
         output_dirpath,
         num_processes,
-        ram_multiplier,
     )

waveorder/cli/compute_transfer_function.py

@@ -277,11 +277,11 @@ def compute_transfer_function_cli(
     )
 
 
-@click.command()
+@click.command("compute-tf")
 @input_position_dirpaths()
 @config_filepath()
 @output_dirpath()
-def compute_tf(
+def _compute_transfer_function_cli(
     input_position_dirpaths: list[Path],
     config_filepath: Path,
     output_dirpath: Path,

waveorder/cli/jobs_mgmt.py

@@ -5,8 +5,6 @@ import threading
 import time
 from pathlib import Path
 
-import submitit
-
 DIR_PATH = os.path.dirname(os.path.realpath(__file__))
 FILE_PATH = os.path.join(DIR_PATH, "main.py")
 
@@ -122,7 +120,7 @@ class JobsManagement:
     def check_all_ExpJobs_completion(self, uID):
         if uID in SERVER_uIDsjobIDs.keys():
             for jobEntry in SERVER_uIDsjobIDs[uID].keys():
-                job: submitit.Job = SERVER_uIDsjobIDs[uID][jobEntry]["job"]
+                job = SERVER_uIDsjobIDs[uID][jobEntry]["job"]
                 jobBool = SERVER_uIDsjobIDs[uID][jobEntry]["bool"]
                 if job is not None and job.done() == False:
                     return False

waveorder/cli/main.py

@@ -1,8 +1,12 @@
 import click
 
-from waveorder.cli.apply_inverse_transfer_function import apply_inv_tf
-from waveorder.cli.compute_transfer_function import compute_tf
-from waveorder.cli.reconstruct import reconstruct
+from waveorder.cli.apply_inverse_transfer_function import (
+    _apply_inverse_transfer_function_cli,
+)
+from waveorder.cli.compute_transfer_function import (
+    _compute_transfer_function_cli,
+)
+from waveorder.cli.reconstruct import _reconstruct_cli
 
 try:
     from waveorder.cli.gui_widget import gui
@@ -23,9 +27,9 @@ def cli():
     """\033[92mwaveorder: Computational Toolkit for Label-Free Imaging\033[0m\n"""
 
 
-cli.add_command(reconstruct)
-cli.add_command(compute_tf)
-cli.add_command(apply_inv_tf)
+cli.add_command(_reconstruct_cli)
+cli.add_command(_compute_transfer_function_cli)
+cli.add_command(_apply_inverse_transfer_function_cli)
 try:
     cli.add_command(gui)
 except:

waveorder/cli/monitor.py

@@ -117,7 +117,7 @@ def monitor_jobs(
 
     # print all jobs once if terminal is too small
     if shutil.get_terminal_size().lines - NON_JOB_LINES < len(jobs):
-        _print_status(jobs, position_dirpaths, elapsed_list, do_print)
+        _print_status(jobs, position_dirpaths, elapsed_list, do_print=do_print)
 
     # main monitor loop
     try:

waveorder/cli/parsing.py

@@ -106,30 +106,3 @@ def processes_option(default: int = None) -> Callable:
         )(f)
 
     return decorator
-
-
-def ram_multiplier() -> Callable:
-    def decorator(f: Callable) -> Callable:
-        return click.option(
-            "--ram-multiplier",
-            "-rx",
-            default=1.0,
-            type=float,
-            help="SLURM RAM multiplier.",
-        )(f)
-
-    return decorator
-
-
-def unique_id() -> Callable:
-    def decorator(f: Callable) -> Callable:
-        return click.option(
-            "--unique-id",
-            "-uid",
-            default="",
-            required=False,
-            type=str,
-            help="Unique ID.",
-        )(f)
-
-    return decorator

waveorder/cli/reconstruct.py

@@ -13,25 +13,19 @@ from waveorder.cli.parsing import (
     input_position_dirpaths,
     output_dirpath,
     processes_option,
-    ram_multiplier,
-    unique_id,
 )
 
 
-@click.command()
+@click.command("reconstruct")
 @input_position_dirpaths()
 @config_filepath()
 @output_dirpath()
 @processes_option(default=1)
-@ram_multiplier()
-@unique_id()
-def reconstruct(
+def _reconstruct_cli(
     input_position_dirpaths,
     config_filepath,
     output_dirpath,
     num_processes,
-    ram_multiplier,
-    unique_id,
 ):
     """
     Reconstruct a dataset using a configuration file. This is a
@@ -67,6 +61,4 @@ def reconstruct(
         config_filepath,
         output_dirpath,
         num_processes,
-        ram_multiplier,
-        unique_id,
     )

waveorder/cli/utils.py

@@ -103,3 +103,27 @@ def apply_inverse_to_zyx_and_save(
             t_idx, output_channel_indices
         ] = reconstruction_czyx
     click.echo(f"Finished Writing.. t={t_idx}")
+
+
+def estimate_resources(shape, settings, num_processes):
+    T, C, Z, Y, X = shape
+
+    gb_ram_per_cpu = 0
+    gb_per_element = 4 / 2**30  # bytes_per_float32 / bytes_per_gb
+    voxel_resource_multiplier = 4
+    fourier_resource_multiplier = 32
+    input_memory = Z * Y * X * gb_per_element
+
+    if settings.birefringence is not None:
+        gb_ram_per_cpu += input_memory * voxel_resource_multiplier
+    if settings.phase is not None:
+        gb_ram_per_cpu += input_memory * fourier_resource_multiplier
+    if settings.fluorescence is not None:
+        gb_ram_per_cpu += input_memory * fourier_resource_multiplier
+    ram_multiplier = 1
+    gb_ram_per_cpu = np.ceil(
+        np.max([1, ram_multiplier * gb_ram_per_cpu])
+    ).astype(int)
+    num_cpus = np.min([32, num_processes])
+
+    return num_cpus, gb_ram_per_cpu

{waveorder-3.0.0a0.dist-info → waveorder-3.0.0a1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: waveorder
-Version: 3.0.0a0
+Version: 3.0.0a1
 Summary: Wave-optical simulations and deconvolution of optical properties
 Author-email: CZ Biohub SF <compmicro@czbiohub.org>
 Maintainer-email: Talon Chandler <talon.chandler@czbiohub.org>, Shalin Mehta <shalin.mehta@czbiohub.org>
@@ -66,7 +66,6 @@ Requires-Dist: pyqtgraph>=0.12.3
 Requires-Dist: pydantic
 Requires-Dist: pywavelets>=1.1.1
 Requires-Dist: scipy>=1.3.0
-Requires-Dist: submitit
 Requires-Dist: torch>=2.4.1
 Requires-Dist: qtpy
 Requires-Dist: wget>=3.2

{waveorder-3.0.0a0.dist-info → waveorder-3.0.0a1.dist-info}/RECORD

@@ -90,7 +90,7 @@ tests/acq_tests/test_acq.py,sha256=J_WNuCrgsCWpHteDwbQXMya3D7uRNUvdS8owSZMTcVA,5
 tests/calibration_tests/test_calibration.py,sha256=fsrEVXFANY4HGLB_Xs3kx0WZf114yk2umnZUCELFbVw,84
 tests/cli_tests/test_cli.py,sha256=YCRH4fVdfZS2Nm0y5wknvvCiZVXxVsjp9tj-m9jB5WQ,220
 tests/cli_tests/test_compute_tf.py,sha256=2uzC-o4_3at-m3r2q-MnvdzBWIK376gRk1AjSmXaCQM,5096
-tests/cli_tests/test_reconstruct.py,sha256=XodkityoyO5TPpgdRTvIQwhTM4DXuVEARhISw4E7TrA,7865
+tests/cli_tests/test_reconstruct.py,sha256=s-l6V7_jI1YiHdEPYicTA9dEwJXRBclinkV2u2032Hw,7864
 tests/cli_tests/test_settings.py,sha256=CiotIunU97AswrCPy87Pb4TWVkYMl2-_7hwvM90gcHI,3978
 tests/mmcore_tests/test_core_func.py,sha256=X6bksIn39Y42UYawL9owRey5TtQ5TQgd8nDvaBR62g8,6029
 tests/models/test_inplane_oriented_thick_pol3D.py,sha256=v0AKTOwXzvv4s4Atne1XOm4Ex-oqWYMBQfILXMdJGKY,1189
@@ -103,7 +103,7 @@ tests/util_tests/test_overlays.py,sha256=LH11T3Kj1U209agdLA_rtdD0j7Nzxv6SYvxHA0Y
 tests/widget_tests/test_dock_widget.py,sha256=gxLVvt2xeh41kKv1FrqHTdwOytSwXD3uBqvv2cZKK3Q,307
 tests/widget_tests/test_sample_contributions.py,sha256=Vy8zyx5EE5igV2506r53kJ_K3CLChjf7eW612pDP9Zg,179
 waveorder/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-waveorder/_version.py,sha256=Smvf3YFuHS_E4OS304doz1JEAtUfozZ6rzwX28UmgtU,519
+waveorder/_version.py,sha256=Dwkg711FkOHOW-hcrSC74e5Z9-Hd2zgSMqBDt88WsKw,519
 waveorder/background_estimator.py,sha256=GFy3N0qqp5M6JVZBbIUvTYhSin8Njg7zA2WN69pKLAE,12398
 waveorder/correction.py,sha256=uAWDKXq-FYwi1obxxWq0A-suNVf1cvqUnPsDC-LIlsM,3460
 waveorder/filter.py,sha256=BSNYTMYy-HrqtupcXMm9OzWPMlX_NF7KSNjeN0-0ghQ,7350
@@ -118,24 +118,24 @@ waveorder/waveorder_reconstructor.py,sha256=-MluWmnZnCZm7Xu-8V8QWX9ma0_5oAZO2Xly
 waveorder/waveorder_simulator.py,sha256=uRRX_wcWzJzlVcfToLpIlh4e8Xt9NjTvdonyGEf2Z1c,45805
 waveorder/acq/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 waveorder/acq/acq_functions.py,sha256=4GJCkxncFunsRbLesf1LErY7CaA26dMh2goVVUr72y0,5128
-waveorder/acq/acquisition_workers.py,sha256=CnDWI7ZDRVd43pbXWkHD4B1YYJ57jbuKO7a6QrlF6-M,22751
+waveorder/acq/acquisition_workers.py,sha256=fUpvv5j3JvVSu2_NUTOVPcFYlIvUciQ1UIo79wQqyPw,22757
 waveorder/calib/Calibration.py,sha256=Fl6zQOJg4V6nKtbAlNL7s9kslmrxk6q-LAueh59F1bA,52007
 waveorder/calib/Optimization.py,sha256=uBQRvZ3tsG52pOSwnRj3Lduf_wVTTYfcjegAZsN58UE,13909
 waveorder/calib/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-waveorder/calib/calibration_workers.py,sha256=ae7BsTepG3DUav7zn6ndZ8x0JkPppeo-XVqjy4-iqBo,15296
+waveorder/calib/calibration_workers.py,sha256=TRxM_tO6I5Arg0ATkyWwSkUwyH09Hv0I1GHRXbyz8II,15300
 waveorder/cli/apply_inverse_models.py,sha256=KyrnsfBI7LDTM9DaBGKnd3D2yrbEHIWUZgwG2rYNz1Y,7866
-waveorder/cli/apply_inverse_transfer_function.py,sha256=ZllV0Azo0im25BUdx10MuE599frfe5MOLV847LSDBjg,15497
-waveorder/cli/compute_transfer_function.py,sha256=moFvKrQwKah4o7kuQtOcV3AB-grrR1ttbnq0Gs560kE,10047
+waveorder/cli/apply_inverse_transfer_function.py,sha256=gSg8PPbltKd5UTEo-r1bs_8vGqmCYFbJNJyff5ylbE8,12436
+waveorder/cli/compute_transfer_function.py,sha256=_7drZUdLAE3pug119UYiijLKLhY8B3f791-UhM_yqB0,10079
 waveorder/cli/gui_widget.py,sha256=VXVaack2t7iUuWOI5gvlxhfkLVp50eBRCdsoJT_ouU4,1245
-waveorder/cli/jobs_mgmt.py,sha256=Yowxh4CXfBfo5tr3n9418J3AdQhWW_Ltkf7p6ZpEF1k,8122
-waveorder/cli/main.py,sha256=YLvKW3tSXBHtf_UPt8qmqwGBBn9DYColLkPTjLiQzhU,826
-waveorder/cli/monitor.py,sha256=4xAZCHad3T3Vm4H6A6q1xQs9yUTe2QKAgOt6SkxhDOM,4748
+waveorder/cli/jobs_mgmt.py,sha256=aP9r3S3CaDOuBX9h4bfwdcL_2MFQbQtwveAuO8i0GRQ,8091
+waveorder/cli/main.py,sha256=uW18kwZOpYbgUKfGXexIF3LITxkUJeRMHnTmAwAPWjc,942
+waveorder/cli/monitor.py,sha256=XBhqyd7dxnXrfca23rm0oAILEnx8lEVPsS2oSfmt8kw,4757
 waveorder/cli/option_eat_all.py,sha256=GJgI4owf59IhZTtQiLsUy19WQJLJDXB-Gg7WIf5aREw,1823
-waveorder/cli/parsing.py,sha256=IWTU8DEgja2sR4RE8KvJkcc-PiU7VeXvOlboSFG-SmQ,3762
+waveorder/cli/parsing.py,sha256=t-Hjxj4S1u4xjJ_bhVEabMpNj6YCulWfpfXgIVs_SEQ,3185
 waveorder/cli/printing.py,sha256=rfGeONEsQT9AJnFY2VDCmi-1E62xdqwrwpJYBT_hFWg,237
-waveorder/cli/reconstruct.py,sha256=lU9507K7l_S6sjiiBaN3mBQEEZ8i2XfeAtLKBLzsgSk,1875
+waveorder/cli/reconstruct.py,sha256=HzTbaSnn4O6txHgn18xqczlaGwFV5cdZReWgDC4TiiI,1749
 waveorder/cli/settings.py,sha256=nP56MHicHq78r_QFD5sehhGCM1fpw-kRNLliJLmaLKY,6356
-waveorder/cli/utils.py,sha256=x4Q1xiPKT-s1VkDEbe_leGjiVssLGr3TbJDK8QFN_VI,3393
+waveorder/cli/utils.py,sha256=0VvtXyBJV-2K8_CxFkOveTRloM7DANGazMpsFH9e4e8,4215
 waveorder/io/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 waveorder/io/_reader.py,sha256=l17s_-1aARCFn76VIpDljoOIL088uPx3A1mTl3T5l9o,1630
 waveorder/io/core_functions.py,sha256=g4HrkfcQinEhCPdt0FtRSXRXUjRL1ZQe5g0sClnjVZA,6553
@@ -162,9 +162,9 @@ waveorder/visuals/jupyter_visuals.py,sha256=6kxICjEtP1qc1EuETc_NJ6Y4A7nVaC-bP3wl
 waveorder/visuals/matplotlib_visuals.py,sha256=v1zi0ZlXEV5CcpNzTWL0vDJ2Md2-RSHnc3rAB61wimg,10915
 waveorder/visuals/napari_visuals.py,sha256=jgyKRlWqJv1PvCRWfpgqRUv6rwIsI4AXQGLL5IftPnM,2352
 waveorder/visuals/utils.py,sha256=QC5WSc2yzPMjk66IjA39iNFgO_0It6evma201hH8Lg4,1001
-waveorder-3.0.0a0.dist-info/licenses/LICENSE,sha256=v_wJE3YLyTOjHj0kgPB9hP9YDieI0WMw7XjOgTmIr2c,1509
-waveorder-3.0.0a0.dist-info/METADATA,sha256=lOMFe0W1uaxBviiddvbPTke-9q3-vGzo2rBfMod-VoM,13910
-waveorder-3.0.0a0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-waveorder-3.0.0a0.dist-info/entry_points.txt,sha256=cOCI4v8cdinVJiyAMlYZtxK6GCS4GF6Qpk1hTsgW18Y,106
-waveorder-3.0.0a0.dist-info/top_level.txt,sha256=WoIUbYCz7Jx3u1TO83s8nOw0wyO5HbWJiffuGvlY-Sk,21
-waveorder-3.0.0a0.dist-info/RECORD,,
+waveorder-3.0.0a1.dist-info/licenses/LICENSE,sha256=v_wJE3YLyTOjHj0kgPB9hP9YDieI0WMw7XjOgTmIr2c,1509
+waveorder-3.0.0a1.dist-info/METADATA,sha256=1ZSNUVKngj2gilDIS9nHbsg6_C73mCv9vRt3nb69Ucs,13886
+waveorder-3.0.0a1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+waveorder-3.0.0a1.dist-info/entry_points.txt,sha256=cOCI4v8cdinVJiyAMlYZtxK6GCS4GF6Qpk1hTsgW18Y,106
+waveorder-3.0.0a1.dist-info/top_level.txt,sha256=WoIUbYCz7Jx3u1TO83s8nOw0wyO5HbWJiffuGvlY-Sk,21
+waveorder-3.0.0a1.dist-info/RECORD,,