water-column-sonar-processing 25.3.0__py3-none-any.whl → 25.3.2__py3-none-any.whl

water_column_sonar_processing/model/zarr_manager.py

@@ -42,7 +42,7 @@ class ZarrManager:
         # Note: returned values do not start at zero.
         # For more info see here: https://echopype.readthedocs.io/en/stable/data-proc-additional.html
         print("Getting depth values.")
-        all_cruise_depth_values = np.linspace(
+        all_cruise_depth_values = np.linspace(  # TODO: PROBLEM HERE
             start=min_echo_range,
             stop=max_echo_range,
             num=int((max_echo_range - min_echo_range) / cruise_min_epsilon) + 1,
@@ -200,6 +200,27 @@ class ZarrManager:
         root.bottom.attrs["long_name"] = Coordinates.BOTTOM_LONG_NAME.value
         root.bottom.attrs["standard_name"] = Coordinates.BOTTOM_STANDARD_NAME.value
 
+        #####################################################################
+        # TODO: verify adding this variable with test
+        # --- Coordinate: Speed --- #
+        root.create_dataset(
+            name=Coordinates.SPEED.value,
+            data=np.repeat(np.nan, width),  # root.longitude[:] = np.nan
+            shape=width,
+            chunks=Constants.SPATIOTEMPORAL_CHUNK_SIZE.value,
+            dtype=np.dtype(Coordinates.SPEED_DTYPE.value),
+            compressor=self.__compressor,
+            fill_value=np.nan,
+            overwrite=self.__overwrite,
+        )
+
+        # SPEED is indexed by TIME
+        root.speed.attrs["_ARRAY_DIMENSIONS"] = [Coordinates.TIME.value]
+
+        root.speed.attrs["units"] = Coordinates.SPEED_UNITS.value
+        root.speed.attrs["long_name"] = Coordinates.SPEED_LONG_NAME.value
+        root.speed.attrs["standard_name"] = Coordinates.SPEED_STANDARD_NAME.value
+
         #####################################################################
         # --- Coordinate: Frequency --- #
         root.create_dataset(

water_column_sonar_processing/utility/constants.py

@@ -3,7 +3,7 @@ from enum import Enum, Flag, unique
 
 @unique
 class Constants(Flag):
-    TILE_SIZE = 1024
+    TILE_SIZE = 512
 
     # Average https://noaa-wcsd-zarr-pds.s3.us-east-1.amazonaws.com/level_2/Henry_B._Bigelow/HB0902/EK60/HB0902.zarr/time/927
     # chunk size is ~1.3 kB, HB0902 cruise takes ~30 seconds to load all time/lat/lon data
@@ -71,6 +71,12 @@ class Coordinates(Enum):
     BOTTOM_LONG_NAME = "Detected sea floor depth"
     BOTTOM_STANDARD_NAME = "bottom"
 
+    SPEED = "speed"
+    SPEED_DTYPE = "float32"
+    SPEED_UNITS = "Knots"
+    SPEED_LONG_NAME = "Nautical miles per hour"
+    SPEED_STANDARD_NAME = "speed"
+
     SV = "Sv"
     SV_DTYPE = "float32"  # TODO: experiment with dtype of int
     SV_UNITS = "dB"

{water_column_sonar_processing-25.3.0.dist-info → water_column_sonar_processing-25.3.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: water_column_sonar_processing
-Version: 25.3.0
+Version: 25.3.2
 Summary: Processing tool for water column sonar data.
 Author-email: Rudy Klucik <rudy.klucik@noaa.gov>
 Maintainer-email: Rudy Klucik <rudy.klucik@noaa.gov>
@@ -49,7 +49,7 @@ Requires-Dist: matplotlib==3.10.1; extra == "dev"
 Requires-Dist: pooch==1.8.2; extra == "dev"
 Requires-Dist: pre-commit; extra == "dev"
 Requires-Dist: pyinstaller; extra == "dev"
-Requires-Dist: pytest~=8.3.3; extra == "dev"
+Requires-Dist: pytest~=8.3.4; extra == "dev"
 Requires-Dist: ruff; extra == "dev"
 Requires-Dist: tqdm; extra == "dev"
 Requires-Dist: twine; extra == "dev"

{water_column_sonar_processing-25.3.0.dist-info → water_column_sonar_processing-25.3.2.dist-info}/RECORD

@@ -18,17 +18,17 @@ water_column_sonar_processing/geometry/pmtile_generation.py,sha256=jgCZgmG-K-hi0
 water_column_sonar_processing/index/__init__.py,sha256=izEObsKiOoIJ0kZCFhvaYsBd6Ga71XJxnogjrNInw68,68
 water_column_sonar_processing/index/index_manager.py,sha256=wvG0rzyR-osqpkF_ufuz2JheZAnpE_eYr-Z088rJPAc,16073
 water_column_sonar_processing/model/__init__.py,sha256=FXaCdbPqxp0ogmZm9NplRirqpgMiYs1iRYgJbFbbX2Y,65
-water_column_sonar_processing/model/zarr_manager.py,sha256=yv36DljPdFJn91rjtl-An9TbDa_FgN1fmN0o3_b1Seg,16026
+water_column_sonar_processing/model/zarr_manager.py,sha256=WMSdbhefAANyg71pu-8LDeiyDrBZu0TLERZXZwuy8Jg,16964
 water_column_sonar_processing/processing/__init__.py,sha256=9zLaJZlI9ylGwCWderusidz9d9wPQoadMstwyKfnao8,169
 water_column_sonar_processing/processing/batch_downloader.py,sha256=PJvm8NKF0bygqnL9yYwoK5ydntUNrCEC4xPyjSrj_ZE,6650
 water_column_sonar_processing/processing/raw_to_zarr.py,sha256=9Kl8Tl4pZTJ-nVTGAk5ALunPjF--jlVAtc-_dE874jI,18280
 water_column_sonar_processing/utility/__init__.py,sha256=yDObMOL0_OxKWet5wffK2-XVJgoE9iwiY2q04GZrtBQ,234
 water_column_sonar_processing/utility/cleaner.py,sha256=bNbs-hopWxtKAFBK0Eu18xdRErZCGZvtla3j-1bTwQw,619
-water_column_sonar_processing/utility/constants.py,sha256=Xj1DeQD1YKlqSHlLs_mhxY-dyWgpx8cR6Lz0StiHvWM,2483
+water_column_sonar_processing/utility/constants.py,sha256=Gk--g8yFLOc6KTOi-YvOo9zvBhaa8PEtjdDIU3XH3b4,2639
 water_column_sonar_processing/utility/pipeline_status.py,sha256=xbl6-4ePq1Krfo18Mgr0jzWz9C_g2Kbey_QZNJuwdkI,4406
 water_column_sonar_processing/utility/timestamp.py,sha256=bO0oir7KxxoEHPGRkz9FCBfOligkocUyRiWRzAq8fnU,361
-water_column_sonar_processing-25.3.0.dist-info/licenses/LICENSE,sha256=lz4IpJ5_adG3S0ali-WaIpQFVTnEAOucMDQPECUVEYw,1110
-water_column_sonar_processing-25.3.0.dist-info/METADATA,sha256=s2FUIanPfkXjnzg-yN4uGcBLrdAxmgWAp69qVC6_Nw0,6257
-water_column_sonar_processing-25.3.0.dist-info/WHEEL,sha256=1tXe9gY0PYatrMPMDd6jXqjfpz_B-Wqm32CPfRC58XU,91
-water_column_sonar_processing-25.3.0.dist-info/top_level.txt,sha256=aRYU4A7RNBlNrL4vzjytFAir3BNnmOgsvIGKKA36tg4,30
-water_column_sonar_processing-25.3.0.dist-info/RECORD,,
+water_column_sonar_processing-25.3.2.dist-info/licenses/LICENSE,sha256=lz4IpJ5_adG3S0ali-WaIpQFVTnEAOucMDQPECUVEYw,1110
+water_column_sonar_processing-25.3.2.dist-info/METADATA,sha256=dMrpWsWRHjoYb56zGgB_WoHQtx0hWafWRb1CXpiDQwE,6257
+water_column_sonar_processing-25.3.2.dist-info/WHEEL,sha256=1tXe9gY0PYatrMPMDd6jXqjfpz_B-Wqm32CPfRC58XU,91
+water_column_sonar_processing-25.3.2.dist-info/top_level.txt,sha256=aRYU4A7RNBlNrL4vzjytFAir3BNnmOgsvIGKKA36tg4,30
+water_column_sonar_processing-25.3.2.dist-info/RECORD,,