vortex-nwp 2.0.0b1__py3-none-any.whl → 2.0.0b2__py3-none-any.whl

vortex/nwp/algo/oopsroot.py

@@ -11,7 +11,11 @@ from bronx.fancies.dump import lightdump, fulldump
 from bronx.stdtypes.date import Date, Time, Period
 from bronx.compat.functools import cached_property
 
-from vortex.algo.components import AlgoComponentError, AlgoComponentDecoMixin, Parallel
+from vortex.algo.components import (
+    AlgoComponentError,
+    AlgoComponentDecoMixin,
+    Parallel,
+)
 from vortex.algo.components import algo_component_deco_mixin_autodoc
 from vortex.data import geometries
 from vortex.tools import grib
@@ -25,7 +29,7 @@ __all__ = []
 logger = footprints.loggers.getLogger(__name__)
 
 
-OOPSMemberInfos = namedtuple('OOPSMemberInfos', ('member', 'date'))
+OOPSMemberInfos = namedtuple("OOPSMemberInfos", ("member", "date"))
 
 
 class EnsSizeAlgoComponentError(AlgoComponentError):
@@ -35,11 +39,17 @@ class EnsSizeAlgoComponentError(AlgoComponentError):
         self.nominal_ens_size = nominal_ens_size
         self.actual_ens_size = actual_ens_size
         self.min_ens_size = min_ens_size
-        super().__init__('{:d} found ({:d} required)'.format(actual_ens_size, min_ens_size))
+        super().__init__(
+            "{:d} found ({:d} required)".format(actual_ens_size, min_ens_size)
+        )
 
     def __reduce__(self):
         red = list(super().__reduce__())
-        red[1] = (self.nominal_ens_size, self.actual_ens_size, self.min_ens_size)
+        red[1] = (
+            self.nominal_ens_size,
+            self.actual_ens_size,
+            self.min_ens_size,
+        )
         return tuple(red)
 
 
@@ -47,17 +57,17 @@ class EnsSizeAlgoComponentError(AlgoComponentError):
 class OOPSMemberDecoMixin(AlgoComponentDecoMixin):
     """Add a member footprints' attribute and use it in the configuration files."""
 
-    _MIXIN_EXTRA_FOOTPRINTS = (algo_member, )
+    _MIXIN_EXTRA_FOOTPRINTS = (algo_member,)
 
     def _algo_member_deco_setup(self, rh, opts):  # @UnusedVariable
         """Update the configuration files."""
         if self.member is not None:
-            self._generic_config_subs['member'] = self.member
+            self._generic_config_subs["member"] = self.member
             for namrh in self.updatable_namelists:
-                namrh.contents.setmacro('MEMBER', self.member)
-                namrh.contents.setmacro('PERTURB', self.member)
+                namrh.contents.setmacro("MEMBER", self.member)
+                namrh.contents.setmacro("PERTURB", self.member)
 
-    _MIXIN_PREPARE_HOOKS = (_algo_member_deco_setup, )
+    _MIXIN_PREPARE_HOOKS = (_algo_member_deco_setup,)
 
 
 @algo_component_deco_mixin_autodoc
@@ -73,42 +83,49 @@ class OOPSMembersTermsDetectDecoMixin(AlgoComponentDecoMixin):
     :note: Effective terms are considered (i.e term - (current_date - resource_date))
     """
 
-    _membersdetect_roles = tuple(p + r
-                                 for p in ('', 'Ensemble')
-                                 for r in ('ModelState',
-                                           'Guess',
-                                           'InitialCondition',
-                                           'Background',
-                                           'SurfaceModelState',
-                                           'SurfaceGuess',
-                                           'SurfaceInitialCondition',
-                                           'SurfaceBackground',)
-                                 )
-
-    _MIXIN_EXTRA_FOOTPRINTS = (footprints.Footprint(
-        info="Abstract mbdetect footprint",
-        attr=dict(
-            ens_minsize=dict(
-                info="For a multi-member algocomponent, the minimum of the ensemble.",
-                optional=True,
-                type=int
-            ),
-            ens_failure_conf_objects=dict(
-                info="For a multi-member algocomponent, alternative config file when the ensemble is too small.",
-                optional=True,
-            ),
-            strict_mbdetect=dict(
-                info="Performs a strict members/terms detection",
-                type=bool,
-                optional=True,
-                default=True,
-                doc_zorder=-60,
-            )
+    _membersdetect_roles = tuple(
+        p + r
+        for p in ("", "Ensemble")
+        for r in (
+            "ModelState",
+            "Guess",
+            "InitialCondition",
+            "Background",
+            "SurfaceModelState",
+            "SurfaceGuess",
+            "SurfaceInitialCondition",
+            "SurfaceBackground",
         )
-    ),)
+    )
+
+    _MIXIN_EXTRA_FOOTPRINTS = (
+        footprints.Footprint(
+            info="Abstract mbdetect footprint",
+            attr=dict(
+                ens_minsize=dict(
+                    info="For a multi-member algocomponent, the minimum of the ensemble.",
+                    optional=True,
+                    type=int,
+                ),
+                ens_failure_conf_objects=dict(
+                    info="For a multi-member algocomponent, alternative config file when the ensemble is too small.",
+                    optional=True,
+                ),
+                strict_mbdetect=dict(
+                    info="Performs a strict members/terms detection",
+                    type=bool,
+                    optional=True,
+                    default=True,
+                    doc_zorder=-60,
+                ),
+            ),
+        ),
+    )
 
     @staticmethod
-    def _stateless_members_detect(smap, basedate, section_check_cb, ensminsize=None, utest=False):
+    def _stateless_members_detect(
+        smap, basedate, section_check_cb, ensminsize=None, utest=False
+    ):
         """
         This method does not really need to be static but this way it allows for
         unit-testing (see ``tests.tests_algo.test_oopspara.py``).
@@ -124,15 +141,22 @@ class OOPSMembersTermsDetectDecoMixin(AlgoComponentDecoMixin):
         for arole, srole in smap.items():
             # Gather data
             for s in srole:
-                minfo = OOPSMemberInfos(getattr(s.rh.provider, 'member', None),
-                                        getattr(s.rh.resource, 'date', None))
-                allmembers[arole][minfo][getattr(s.rh.resource, 'term', None)].add(s)
+                minfo = OOPSMemberInfos(
+                    getattr(s.rh.provider, "member", None),
+                    getattr(s.rh.resource, "date", None),
+                )
+                allmembers[arole][minfo][
+                    getattr(s.rh.resource, "term", None)
+                ].add(s)
             # Sanity checks and filtering
             role_members_info = set(allmembers[arole].keys())
             if None in {a_member.member for a_member in role_members_info}:
                 # Ignore sections when some sections have no members defined
                 if len(role_members_info) > 1:
-                    logger.warning('Role: %s. Only some sections have a member number.', arole)
+                    logger.warning(
+                        "Role: %s. Only some sections have a member number.",
+                        arole,
+                    )
                 role_members_info = set()
             if len(role_members_info) > 1:
                 if not members:
@@ -140,7 +164,9 @@ class OOPSMembersTermsDetectDecoMixin(AlgoComponentDecoMixin):
                 else:
                     # Consistency check on members numbering
                     if members != role_members_info:
-                        raise AlgoComponentError('Inconsistent members numbering')
+                        raise AlgoComponentError(
+                            "Inconsistent members numbering"
+                        )
             else:
                 # If there is only one member, ignore it: it's not really an ensemble!
                 del allmembers[arole]
@@ -155,14 +181,19 @@ class OOPSMembersTermsDetectDecoMixin(AlgoComponentDecoMixin):
             # Be verbose...
             if lagged:
                 for a_date, a_mset in members_by_date.items():
-                    logger.info('Members detected from date=%s: %s',
-                                a_date, ','.join(sorted(str(m) for m in a_mset)))
+                    logger.info(
+                        "Members detected from date=%s: %s",
+                        a_date,
+                        ",".join(sorted(str(m) for m in a_mset)),
+                    )
             else:
-                logger.info('Members detected: %s',
-                            ','.join(sorted(str(m[0]) for m in members)))
-            logger.info('Total number of detected members: %d', len(members))
+                logger.info(
+                    "Members detected: %s",
+                    ",".join(sorted(str(m[0]) for m in members)),
+                )
+            logger.info("Total number of detected members: %d", len(members))
             r_members = sorted(allmembers.keys())
-            logger.info('Members roles: %s', ','.join(r_members))
+            logger.info("Members roles: %s", ",".join(r_members))
 
         # Look for effective terms
         alleffterms = dict()
@@ -171,24 +202,30 @@ class OOPSMembersTermsDetectDecoMixin(AlgoComponentDecoMixin):
             for minfo, mterms in srole.items():
                 effterms = set()
                 for term in mterms.keys():
-                    effterms.add(term - (basedate - minfo.date)
-                                 if term is not None and minfo.date is not None
-                                 else None)
+                    effterms.add(
+                        term - (basedate - minfo.date)
+                        if term is not None and minfo.date is not None
+                        else None
+                    )
                 # Intra-role consistency
                 if first_effterms is None:
                     first_effterms = effterms
                 else:
                     # Consistency check on members numbering
                     if effterms != first_effterms:
-                        raise AlgoComponentError('Inconsistent effective terms between members sets (role={:s})'
-                                                 .format(arole))
+                        raise AlgoComponentError(
+                            "Inconsistent effective terms between members sets (role={:s})".format(
+                                arole
+                            )
+                        )
             # If there are more than one term, consider it
             if len(first_effterms) > 1:
                 # Check that there is no None in the way
                 if None in first_effterms:
                     raise AlgoComponentError(
-                        'For a given role, all of the resources or none of then should have a term (role={:s})'
-                        .format(arole)
+                        "For a given role, all of the resources or none of then should have a term (role={:s})".format(
+                            arole
+                        )
                     )
             # Remove Nones
             first_effterms = {e for e in first_effterms if e is not None}
@@ -200,19 +237,34 @@ class OOPSMembersTermsDetectDecoMixin(AlgoComponentDecoMixin):
         l_effterms = []
         if alleffterms:
             # Hard check only when multiple effetive terms are found
-            multieffterms = {r: ets for r, ets in alleffterms.items() if len(ets) > 1}
+            multieffterms = {
+                r: ets for r, ets in alleffterms.items() if len(ets) > 1
+            }
             if multieffterms:
-                if sum(1 for _ in itertools.groupby(multieffterms.values())) > 1:
-                    raise AlgoComponentError('Inconsistent effective terms between relevant roles')
+                if (
+                    sum(1 for _ in itertools.groupby(multieffterms.values()))
+                    > 1
+                ):
+                    raise AlgoComponentError(
+                        "Inconsistent effective terms between relevant roles"
+                    )
                 r_effterms = sorted(multieffterms.keys())
                 _, l_effterms = multieffterms.popitem()
             else:
-                if sum(1 for _ in itertools.groupby(alleffterms.values())) == 1:
+                if (
+                    sum(1 for _ in itertools.groupby(alleffterms.values()))
+                    == 1
+                ):
                     r_effterms = sorted(alleffterms.keys())
                     _, l_effterms = alleffterms.popitem()
             l_effterms = sorted(l_effterms)
-            logger.info('Effective terms detected: %s', ','.join([str(t) for t in effterms]))
-            logger.info('Terms roles: %s', ','.join(sorted(alleffterms.keys())))
+            logger.info(
+                "Effective terms detected: %s",
+                ",".join([str(t) for t in effterms]),
+            )
+            logger.info(
+                "Terms roles: %s", ",".join(sorted(alleffterms.keys()))
+            )
 
         # Theoretical ensemble size
         nominal_ens_size = len(members)
@@ -222,55 +274,87 @@ class OOPSMembersTermsDetectDecoMixin(AlgoComponentDecoMixin):
                 # Look for missing resources in the various relevant roles
                 broken = list()
                 for arole in allmembers.keys():
-                    broken.extend([(s, arole)
-                                   for t, slist in allmembers[arole][mb].items()
-                                   for s in slist
-                                   if not section_check_cb(s)])
+                    broken.extend(
+                        [
+                            (s, arole)
+                            for t, slist in allmembers[arole][mb].items()
+                            for s in slist
+                            if not section_check_cb(s)
+                        ]
+                    )
                 for s, arole in broken:
                     if not utest:
-                        logger.warning('Missing items: %s (role: %s).',
-                                       s.rh.container.localpath(), arole)
+                        logger.warning(
+                            "Missing items: %s (role: %s).",
+                            s.rh.container.localpath(),
+                            arole,
+                        )
                 if broken:
-                    logger.warning('Throwing away member: %s', mb)
+                    logger.warning("Throwing away member: %s", mb)
                 else:
                     eff_members.add(mb)
             # Sanity checks depending on ensminsize
             if ensminsize is None and len(eff_members) != nominal_ens_size:
-                raise EnsSizeAlgoComponentError(nominal_ens_size, len(eff_members), nominal_ens_size)
+                raise EnsSizeAlgoComponentError(
+                    nominal_ens_size, len(eff_members), nominal_ens_size
+                )
             elif ensminsize is not None and len(eff_members) < ensminsize:
-                raise EnsSizeAlgoComponentError(nominal_ens_size, len(eff_members), ensminsize)
+                raise EnsSizeAlgoComponentError(
+                    nominal_ens_size, len(eff_members), ensminsize
+                )
 
             members = eff_members
 
         l_members = [m.member for m in sorted(members)]
         l_members_d = [m.date for m in sorted(members)]
-        l_members_o = [None if m.date is None else (basedate - m.date)
-                       for m in sorted(members)]
-
-        return (l_members, l_members_d, l_members_o, l_effterms,
-                lagged, nominal_ens_size, r_members, r_effterms)
+        l_members_o = [
+            None if m.date is None else (basedate - m.date)
+            for m in sorted(members)
+        ]
+
+        return (
+            l_members,
+            l_members_d,
+            l_members_o,
+            l_effterms,
+            lagged,
+            nominal_ens_size,
+            r_members,
+            r_effterms,
+        )
 
     def members_detect(self):
         """Detect the members/terms list and update the substitution dictionary."""
-        sectionsmap = {r: self.context.sequence.filtered_inputs(role=r, no_alternates=True)
-                       for r in self._membersdetect_roles}
+        sectionsmap = {
+            r: self.context.sequence.filtered_inputs(
+                role=r, no_alternates=True
+            )
+            for r in self._membersdetect_roles
+        }
         try:
-            (self._ens_members_num,
-             self._ens_members_date,
-             self._ens_members_offset,
-             self._ens_effterms,
-             self._ens_is_lagged,
-             self._ens_nominal_size,
-             _, _) = self._stateless_members_detect(sectionsmap,
-                                                    self.date,
-                                                    self.context.sequence.is_somehow_viable,
-                                                    self.ens_minsize)
+            (
+                self._ens_members_num,
+                self._ens_members_date,
+                self._ens_members_offset,
+                self._ens_effterms,
+                self._ens_is_lagged,
+                self._ens_nominal_size,
+                _,
+                _,
+            ) = self._stateless_members_detect(
+                sectionsmap,
+                self.date,
+                self.context.sequence.is_somehow_viable,
+                self.ens_minsize,
+            )
         except EnsSizeAlgoComponentError as e:
             if self.strict_mbdetect and self.ens_failure_conf_objects is None:
                 raise
             else:
                 logger.warning("Members detection failed: %s", str(e))
-                logger.info("'strict_mbdetect' is False... going on with empty lists.")
+                logger.info(
+                    "'strict_mbdetect' is False... going on with empty lists."
+                )
                 self._ens_members_num = []
                 self._ens_members_date = []
                 self._ens_members_offset = []
@@ -281,12 +365,17 @@ class OOPSMembersTermsDetectDecoMixin(AlgoComponentDecoMixin):
                     # Find the new configuration object
                     main_conf = None
                     for sconf, ssub in self._individual_config_subs.items():
-                        if getattr(sconf.rh.resource, 'objects', '') == self.ens_failure_conf_objects:
+                        if (
+                            getattr(sconf.rh.resource, "objects", "")
+                            == self.ens_failure_conf_objects
+                        ):
                             main_conf = sconf
                             main_conf_sub = ssub
                             break
                     if main_conf is None:
-                        raise AlgoComponentError('Alternative configuration file was not found')
+                        raise AlgoComponentError(
+                            "Alternative configuration file was not found"
+                        )
                     # Update the config ordered dictionary
                     del self._individual_config_subs[main_conf]
                     new_individual_config_subs = OrderedDict()
@@ -294,31 +383,40 @@ class OOPSMembersTermsDetectDecoMixin(AlgoComponentDecoMixin):
                     for sconf, ssub in self._individual_config_subs.items():
                         new_individual_config_subs[sconf] = ssub
                     self._individual_config_subs = new_individual_config_subs
-                    logger.info("Using an alternative configuration file (objects=%s, role=%s)",
-                                self.ens_failure_conf_objects, main_conf.role)
+                    logger.info(
+                        "Using an alternative configuration file (objects=%s, role=%s)",
+                        self.ens_failure_conf_objects,
+                        main_conf.role,
+                    )
 
-        self._generic_config_subs['ens_members_num'] = self._ens_members_num
-        self._generic_config_subs['ens_members_date'] = self._ens_members_date
-        self._generic_config_subs['ens_members_offset'] = self._ens_members_offset
-        self._generic_config_subs['ens_is_lagged'] = self._ens_is_lagged
+        self._generic_config_subs["ens_members_num"] = self._ens_members_num
+        self._generic_config_subs["ens_members_date"] = self._ens_members_date
+        self._generic_config_subs["ens_members_offset"] = (
+            self._ens_members_offset
+        )
+        self._generic_config_subs["ens_is_lagged"] = self._ens_is_lagged
         # Legacy:
-        self._generic_config_subs['members'] = self._ens_members_num
+        self._generic_config_subs["members"] = self._ens_members_num
         # Namelist stuff
         for namrh in self.updatable_namelists:
-            namrh.contents.setmacro('ENS_MEMBERS', len(self._ens_members_num))
+            namrh.contents.setmacro("ENS_MEMBERS", len(self._ens_members_num))
             if self._ens_members_num:
-                namrh.contents.setmacro('ENS_AUTO_NSTRIN', len(self._ens_members_num))
+                namrh.contents.setmacro(
+                    "ENS_AUTO_NSTRIN", len(self._ens_members_num)
+                )
             else:
-                namrh.contents.setmacro('ENS_AUTO_NSTRIN', self._ens_nominal_size)
-        self._generic_config_subs['ens_effterms'] = self._ens_effterms
+                namrh.contents.setmacro(
+                    "ENS_AUTO_NSTRIN", self._ens_nominal_size
+                )
+        self._generic_config_subs["ens_effterms"] = self._ens_effterms
         # Legacy:
-        self._generic_config_subs['effterms'] = self._ens_effterms
+        self._generic_config_subs["effterms"] = self._ens_effterms
 
     def _membersd_setup(self, rh, opts):  # @UnusedVariable
         """Set up the members/terms detection."""
         self.members_detect()
 
-    _MIXIN_PREPARE_HOOKS = (_membersd_setup, )
+    _MIXIN_PREPARE_HOOKS = (_membersd_setup,)
 
 
 @algo_component_deco_mixin_autodoc
@@ -331,137 +429,171 @@ class OOPSMembersTermsDecoMixin(AlgoComponentDecoMixin):
     the configuration file substitutions dictionary ``_generic_config_subs``.
     """
 
-    _MIXIN_EXTRA_FOOTPRINTS = (oops_members_terms_lists, )
+    _MIXIN_EXTRA_FOOTPRINTS = (oops_members_terms_lists,)
 
     def _membersterms_deco_setup(self, rh, opts):  # @UnusedVariable
         """Setup the configuration file."""
-        actualmembers = [m if isinstance(m, int) else int(m)
-                         for m in self.members]
-        actualterms = [t if isinstance(t, Time) else Time(t)
-                       for t in self.terms]
-        self._generic_config_subs['members'] = actualmembers
-        self._generic_config_subs['effterms'] = actualterms
+        actualmembers = [
+            m if isinstance(m, int) else int(m) for m in self.members
+        ]
+        actualterms = [
+            t if isinstance(t, Time) else Time(t) for t in self.terms
+        ]
+        self._generic_config_subs["members"] = actualmembers
+        self._generic_config_subs["effterms"] = actualterms
 
-    _MIXIN_PREPARE_HOOKS = (_membersterms_deco_setup, )
+    _MIXIN_PREPARE_HOOKS = (_membersterms_deco_setup,)
 
 
 @algo_component_deco_mixin_autodoc
 class OOPSTimestepDecoMixin(AlgoComponentDecoMixin):
     """Add a timsestep attribute and handle substitutions."""
 
-    _MIXIN_EXTRA_FOOTPRINTS = (footprints.Footprint(
-        info="Abstract timestep footprint",
-        attr=dict(
-            timestep=dict(
-                info="A possible model timestep (in seconds).",
-                optional=True,
-                type=float
+    _MIXIN_EXTRA_FOOTPRINTS = (
+        footprints.Footprint(
+            info="Abstract timestep footprint",
+            attr=dict(
+                timestep=dict(
+                    info="A possible model timestep (in seconds).",
+                    optional=True,
+                    type=float,
+                ),
             ),
         ),
-    ),)
+    )
 
     def _timestep_deco_setup(self, rh, opts):  # @UnusedVariable
         """Set up the timestep in config and namelists."""
         if self.timestep is not None:
-            self._generic_config_subs['timestep'] = Period(seconds=self.timestep)
+            self._generic_config_subs["timestep"] = Period(
+                seconds=self.timestep
+            )
             logger.info("Set macro TIMESTEP=%f in namelists.", self.timestep)
             for namrh in self.updatable_namelists:
-                namrh.contents.setmacro('TIMESTEP', self.timestep)
+                namrh.contents.setmacro("TIMESTEP", self.timestep)
 
-    _MIXIN_PREPARE_HOOKS = (_timestep_deco_setup, )
+    _MIXIN_PREPARE_HOOKS = (_timestep_deco_setup,)
 
 
 @algo_component_deco_mixin_autodoc
 class OOPSIncrementalDecoMixin(AlgoComponentDecoMixin):
     """Add incremental attributes and handle substitutions."""
 
-    _MIXIN_EXTRA_FOOTPRINTS = (footprints.Footprint(
-        info="Abstract incremental_* footprint",
-        attr=dict(
-            incremental_tsteps=dict(
-                info="Timestep for each of the outer loop iteration (in seconds).",
-                optional=True,
-                type=footprints.FPList,
-                default=footprints.FPList(),
-            ),
-            incremental_niters=dict(
-                info="Inner loop size for each of the outer loop iteration.",
-                optional=True,
-                type=footprints.FPList,
-                default=footprints.FPList(),
-            ),
-            incremental_geos=dict(
-                info="Geometry for each of the outer loop iteration.",
-                optional=True,
-                type=footprints.FPList,
-                default=footprints.FPList(),
+    _MIXIN_EXTRA_FOOTPRINTS = (
+        footprints.Footprint(
+            info="Abstract incremental_* footprint",
+            attr=dict(
+                incremental_tsteps=dict(
+                    info="Timestep for each of the outer loop iteration (in seconds).",
+                    optional=True,
+                    type=footprints.FPList,
+                    default=footprints.FPList(),
+                ),
+                incremental_niters=dict(
+                    info="Inner loop size for each of the outer loop iteration.",
+                    optional=True,
+                    type=footprints.FPList,
+                    default=footprints.FPList(),
+                ),
+                incremental_geos=dict(
+                    info="Geometry for each of the outer loop iteration.",
+                    optional=True,
+                    type=footprints.FPList,
+                    default=footprints.FPList(),
+                ),
             ),
         ),
-    ),)
+    )
 
     def _incremental_deco_setup(self, rh, opts):  # @UnusedVariable
         """Set up the incremental DA settings in config and namelists."""
         if self.incremental_tsteps or self.incremental_niters:
-            sizes = {len(t) for t in [self.incremental_tsteps,
-                                      self.incremental_niters,
-                                      self.incremental_geos] if t}
+            sizes = {
+                len(t)
+                for t in [
+                    self.incremental_tsteps,
+                    self.incremental_niters,
+                    self.incremental_geos,
+                ]
+                if t
+            }
             if len(sizes) != 1:
-                raise ValueError('Inconsistent sizes between incr_tsteps and incr_niters')
+                raise ValueError(
+                    "Inconsistent sizes between incr_tsteps and incr_niters"
+                )
             actual_tsteps = [float(t) for t in (self.incremental_tsteps or ())]
             actual_tsteps_p = [Period(seconds=t) for t in actual_tsteps]
             actual_niters = [int(t) for t in (self.incremental_niters or ())]
-            actual_geos = [g if isinstance(g, geometries.Geometry) else geometries.get(tag=g)
-                           for g in (self.incremental_geos or ())]
+            actual_geos = [
+                g
+                if isinstance(g, geometries.Geometry)
+                else geometries.get(tag=g)
+                for g in (self.incremental_geos or ())
+            ]
             if actual_tsteps:
-                self._generic_config_subs['incremental_tsteps'] = actual_tsteps_p
+                self._generic_config_subs["incremental_tsteps"] = (
+                    actual_tsteps_p
+                )
                 for upd_i, tstep in enumerate(actual_tsteps, start=1):
-                    logger.info("Set macro UPD%d_TIMESTEP=%f macro in namelists.",
-                                upd_i, tstep)
+                    logger.info(
+                        "Set macro UPD%d_TIMESTEP=%f macro in namelists.",
+                        upd_i,
+                        tstep,
+                    )
                     for namrh in self.updatable_namelists:
-                        namrh.contents.setmacro('UPD{:d}_TIMESTEP'.format(upd_i), tstep)
+                        namrh.contents.setmacro(
+                            "UPD{:d}_TIMESTEP".format(upd_i), tstep
+                        )
             if actual_niters:
-                self._generic_config_subs['incremental_niters'] = actual_niters
+                self._generic_config_subs["incremental_niters"] = actual_niters
                 for upd_i, niter in enumerate(actual_niters, start=1):
-                    logger.info("Set macro UPD%d_NITER=%d macro in namelists.",
-                                upd_i, niter)
+                    logger.info(
+                        "Set macro UPD%d_NITER=%d macro in namelists.",
+                        upd_i,
+                        niter,
+                    )
                     for namrh in self.updatable_namelists:
-                        namrh.contents.setmacro('UPD{:d}_NITER'.format(upd_i), niter)
+                        namrh.contents.setmacro(
+                            "UPD{:d}_NITER".format(upd_i), niter
+                        )
             if actual_geos:
-                self._generic_config_subs['incremental_geos'] = actual_geos
+                self._generic_config_subs["incremental_geos"] = actual_geos
 
     _MIXIN_PREPARE_HOOKS = (_incremental_deco_setup,)
 
 
-class OOPSParallel(Parallel,
-                   drhook.DrHookDecoMixin,
-                   grib.EcGribDecoMixin,
-                   satrad.SatRadDecoMixin):
+class OOPSParallel(
+    Parallel,
+    drhook.DrHookDecoMixin,
+    grib.EcGribDecoMixin,
+    satrad.SatRadDecoMixin,
+):
     """Abstract AlgoComponent for any OOPS run."""
 
     _abstract = True
     _footprint = dict(
-        info = "Any OOPS Run (abstract).",
-        attr = dict(
-            kind = dict(
-                values          = ['oorun'],
+        info="Any OOPS Run (abstract).",
+        attr=dict(
+            kind=dict(
+                values=["oorun"],
             ),
-            date = dict(
-                info            = 'The current run date.',
-                access          = 'rwx',
-                type            = Date,
-                doc_zorder      = -50,
+            date=dict(
+                info="The current run date.",
+                access="rwx",
+                type=Date,
+                doc_zorder=-50,
             ),
-            config_subs = dict(
-                info            = "Substitutions to be performed in the config file (before run)",
-                optional        = True,
-                type            = footprints.FPDict,
-                default         = footprints.FPDict(),
-                doc_zorder      = -60,
+            config_subs=dict(
+                info="Substitutions to be performed in the config file (before run)",
+                optional=True,
+                type=footprints.FPDict,
+                default=footprints.FPDict(),
+                doc_zorder=-60,
             ),
             binarysingle=dict(
-                default         = 'basicnwp',
+                default="basicnwp",
             ),
-        )
+        ),
     )
 
     def __init__(self, *kargs, **kwargs):
@@ -480,11 +612,11 @@ class OOPSParallel(Parallel,
     def valid_executable(self, rh):
         """Be sure that the specified executable has a cycle attribute."""
         valid = super().valid_executable(rh)
-        if hasattr(rh.resource, 'cycle'):
+        if hasattr(rh.resource, "cycle"):
             self._oops_cycle = rh.resource.cycle
             return valid
         else:
-            logger.error('The binary < %s > has no cycle attribute', repr(rh))
+            logger.error("The binary < %s > has no cycle attribute", repr(rh))
             return False
 
     def prepare(self, rh, opts):
@@ -508,24 +640,31 @@ class OOPSParallel(Parallel,
         """Prepare options for the binary's command line."""
         mconfig = list(self._individual_config_subs.keys())[0]
         configfile = mconfig.rh.container.localpath()
-        options = {'configfile': configfile}
+        options = {"configfile": configfile}
         return options
 
     @cached_property
     def updatable_namelists(self):
-        return [s.rh for s in self.context.sequence.effective_inputs(role='Namelist')]
+        return [
+            s.rh
+            for s in self.context.sequence.effective_inputs(role="Namelist")
+        ]
 
     def set_config_rendering(self):
         """
         Look into effective inputs for configuration files and register them for
         a later rendering using bronx' templating system.
         """
-        mconfig = self.context.sequence.effective_inputs(role='MainConfig')
-        gconfig = self.context.sequence.effective_inputs(role='Config')
+        mconfig = self.context.sequence.effective_inputs(role="MainConfig")
+        gconfig = self.context.sequence.effective_inputs(role="Config")
         if len(mconfig) > 1:
-            raise AlgoComponentError("Only one Main Config section may be provided.")
+            raise AlgoComponentError(
+                "Only one Main Config section may be provided."
+            )
         if len(mconfig) == 0 and len(gconfig) != 1:
-            raise AlgoComponentError("Please provide a Main Config section or a unique Config section.")
+            raise AlgoComponentError(
+                "Please provide a Main Config section or a unique Config section."
+            )
         if len(mconfig) == 1:
             gconfig.insert(0, mconfig[0])
         self._individual_config_subs = {sconf: dict() for sconf in gconfig}
@@ -534,40 +673,53 @@ class OOPSParallel(Parallel,
         """Render registered configuration files using the bronx' templating system."""
         l_first = True
         for sconf, sdict in self._individual_config_subs.items():
-            self.system.subtitle('Configuration file rendering for: {:s}'
-                                 .format(sconf.rh.container.localpath()))
+            self.system.subtitle(
+                "Configuration file rendering for: {:s}".format(
+                    sconf.rh.container.localpath()
+                )
+            )
             l_subs = dict(now=self.date, date=self.date)
             l_subs.update(self._generic_config_subs)
             l_subs.update(sdict)
             l_subs.update(self.config_subs)
             if l_subs != self._last_l_subs.get(sconf, dict()):
-                if not hasattr(sconf.rh.contents, 'bronx_tpl_render'):
-                    logger.error('The < %s > content object has no "bronx_tpl_render" method. Skipping it.',
-                                 repr(sconf.rh.contents))
+                if not hasattr(sconf.rh.contents, "bronx_tpl_render"):
+                    logger.error(
+                        'The < %s > content object has no "bronx_tpl_render" method. Skipping it.',
+                        repr(sconf.rh.contents),
+                    )
                     continue
                 try:
-                    sconf.rh.contents.bronx_tpl_render(** l_subs)
+                    sconf.rh.contents.bronx_tpl_render(**l_subs)
                 except Exception:
-                    logger.error('The config file rendering failed. The substitution dict was: \n%s',
-                                 lightdump(l_subs))
+                    logger.error(
+                        "The config file rendering failed. The substitution dict was: \n%s",
+                        lightdump(l_subs),
+                    )
                     raise
                 self._last_l_subs[sconf] = l_subs
                 if l_first:
                     print(fulldump(sconf.rh.contents.data))
                 sconf.rh.save()
             else:
-                logger.info("It's not necessary to update the file (no changes).")
+                logger.info(
+                    "It's not necessary to update the file (no changes)."
+                )
             l_first = False
 
     def do_namelist_rendering(self):
-        todo = [r for r in self.updatable_namelists if r.contents.dumps_needs_update]
-        self.system.subtitle('Updating namelists')
+        todo = [
+            r
+            for r in self.updatable_namelists
+            if r.contents.dumps_needs_update
+        ]
+        self.system.subtitle("Updating namelists")
         if todo:
             for namrh in todo:
-                logger.info('Rewriting %s.', namrh.container.localpath())
+                logger.info("Rewriting %s.", namrh.container.localpath())
                 namrh.save()
         else:
-            logger.info('None of the namelists need to be rewritten.')
+            logger.info("None of the namelists need to be rewritten.")
 
     def boost_defaults(self):
         """Set defaults for BOOST environment variables.
@@ -576,14 +728,14 @@ class OOPSParallel(Parallel,
         depends on the code's cycle number.
         """
         defaults = {
-            IfsCycle('cy1'): {
-                'BOOST_TEST_CATCH_SYSTEM_ERRORS': 'no',
-                'BOOST_TEST_DETECT_FP_EXCEPTIONS': 'no',
-                'BOOST_TEST_LOG_FORMAT': 'XML',
-                'BOOST_TEST_LOG_LEVEL': 'message',
-                'BOOST_TEST_OUTPUT_FORMAT': 'XML',
-                'BOOST_TEST_REPORT_FORMAT': 'XML',
-                'BOOST_TEST_RESULT_CODE': 'yes'
+            IfsCycle("cy1"): {
+                "BOOST_TEST_CATCH_SYSTEM_ERRORS": "no",
+                "BOOST_TEST_DETECT_FP_EXCEPTIONS": "no",
+                "BOOST_TEST_LOG_FORMAT": "XML",
+                "BOOST_TEST_LOG_LEVEL": "message",
+                "BOOST_TEST_OUTPUT_FORMAT": "XML",
+                "BOOST_TEST_REPORT_FORMAT": "XML",
+                "BOOST_TEST_RESULT_CODE": "yes",
             }
         }
         cydefaults = None
@@ -591,9 +743,11 @@ class OOPSParallel(Parallel,
             if k < self.oops_cycle:
                 cydefaults = defdict
                 break
-        self.algoassert(cydefaults is not None,
-                        'BOOST defaults not found for cycle: {!s}'.format(self.oops_cycle))
-        logger.info('Setting up BOOST defaults:%s', lightdump(cydefaults))
+        self.algoassert(
+            cydefaults is not None,
+            "BOOST defaults not found for cycle: {!s}".format(self.oops_cycle),
+        )
+        logger.info("Setting up BOOST defaults:%s", lightdump(cydefaults))
         self.env.default(**cydefaults)
 
     def eckit_defaults(self):
@@ -603,10 +757,12 @@ class OOPSParallel(Parallel,
         depends on the code's cycle number.
         """
         defaults = {
-            IfsCycle('cy1'): {
-                'ECKIT_MPI_INIT_THREAD': ('MPI_THREAD_MULTIPLE'
-                                          if int(self.env.get('OMP_NUM_THREADS', '1')) > 1
-                                          else 'MPI_THREAD_SINGLE'),
+            IfsCycle("cy1"): {
+                "ECKIT_MPI_INIT_THREAD": (
+                    "MPI_THREAD_MULTIPLE"
+                    if int(self.env.get("OMP_NUM_THREADS", "1")) > 1
+                    else "MPI_THREAD_SINGLE"
+                ),
             }
         }
         cydefaults = None
@@ -614,9 +770,11 @@ class OOPSParallel(Parallel,
             if k < self.oops_cycle:
                 cydefaults = defdict
                 break
-        self.algoassert(cydefaults is not None,
-                        'eckit defaults not found for cycle: {!s}'.format(self.oops_cycle))
-        logger.info('Setting up eckit defaults:%s', lightdump(cydefaults))
+        self.algoassert(
+            cydefaults is not None,
+            "eckit defaults not found for cycle: {!s}".format(self.oops_cycle),
+        )
+        logger.info("Setting up eckit defaults:%s", lightdump(cydefaults))
         self.env.default(**cydefaults)
 
 
@@ -625,15 +783,15 @@ class OOPSODB(OOPSParallel, odb.OdbComponentDecoMixin):
 
     _abstract = True
     _footprint = dict(
-        info = "OOPS ObsOperator Test run.",
-        attr = dict(
-            kind = dict(
-                values      = ['oorunodb'],
+        info="OOPS ObsOperator Test run.",
+        attr=dict(
+            kind=dict(
+                values=["oorunodb"],
             ),
-            binarysingle = dict(
-                default     = 'basicnwpobsort',
+            binarysingle=dict(
+                default="basicnwpobsort",
             ),
-        )
+        ),
     )
 
     #: If ``True``, an empty CCMA database will be created before the run and
@@ -648,18 +806,24 @@ class OOPSODB(OOPSParallel, odb.OdbComponentDecoMixin):
 
         # Looking for input observations
         allodb = self.lookupodb()
-        allcma = [x for x in allodb if x.rh.resource.layout.lower() == self.virtualdb]
-        if self.virtualdb.lower() == 'ccma':
-            self.algoassert(len(allcma) == 1, 'A unique CCMA database is to be provided.')
-            self.algoassert(not self._OOPSODB_CCMA_DIRECT,
-                            '_OOPSODB_CCMA_DIRECT needs to be False if virtualdb=ccma.')
+        allcma = [
+            x for x in allodb if x.rh.resource.layout.lower() == self.virtualdb
+        ]
+        if self.virtualdb.lower() == "ccma":
+            self.algoassert(
+                len(allcma) == 1, "A unique CCMA database is to be provided."
+            )
+            self.algoassert(
+                not self._OOPSODB_CCMA_DIRECT,
+                "_OOPSODB_CCMA_DIRECT needs to be False if virtualdb=ccma.",
+            )
             cma = allcma[0]
             cma_path = sh.path.abspath(cma.rh.container.localpath())
         else:
             cma_path = self.odb_merge_if_needed(allcma)
             if self._OOPSODB_CCMA_DIRECT:
-                ccma_path = self.odb_create_db(layout='CCMA')
-                self.odb.fix_db_path('CCMA', ccma_path)
+                ccma_path = self.odb_create_db(layout="CCMA")
+                self.odb.fix_db_path("CCMA", ccma_path)
 
         # Set ODB environment
         self.odb.fix_db_path(self.virtualdb, cma_path)
@@ -669,51 +833,61 @@ class OOPSODB(OOPSParallel, odb.OdbComponentDecoMixin):
         else:
             self.odb.ioassign_gather(cma_path)
 
-        if self.virtualdb.lower() != 'ccma':
+        if self.virtualdb.lower() != "ccma":
             self.odb.create_poolmask(self.virtualdb, cma_path)
-            self.odb.shuffle_setup(self.slots,
-                                   mergedirect=True,
-                                   ccmadirect=self._OOPSODB_CCMA_DIRECT)
+            self.odb.shuffle_setup(
+                self.slots,
+                mergedirect=True,
+                ccmadirect=self._OOPSODB_CCMA_DIRECT,
+            )
 
         # Fix the input databases intent
-        self.odb_rw_or_overwrite_method(* allcma)
+        self.odb_rw_or_overwrite_method(*allcma)
 
         # Look for extras ODB raw
         self.odb_handle_raw_dbs()
 
         # Allow assimilation window / timeslots configuration
-        self._generic_config_subs['window_length'] = self.slots.window
-        self._generic_config_subs['window_lmargin'] = Period(- self.slots.start)
-        self._generic_config_subs['window_rmargin'] = self.slots.window + self.slots.start
-        self._generic_config_subs['timeslot_length'] = self.slots.chunk
-        self._generic_config_subs['timeslot_centered'] = self.slots.center
-        self._generic_config_subs['timeslot_centers'] = self.slots.as_centers_fromstart()
-
-
-class OOPSAnalysis(OOPSODB,
-                   OOPSTimestepDecoMixin,
-                   OOPSIncrementalDecoMixin,
-                   OOPSMemberDecoMixin,
-                   OOPSMembersTermsDetectDecoMixin):
+        self._generic_config_subs["window_length"] = self.slots.window
+        self._generic_config_subs["window_lmargin"] = Period(-self.slots.start)
+        self._generic_config_subs["window_rmargin"] = (
+            self.slots.window + self.slots.start
+        )
+        self._generic_config_subs["timeslot_length"] = self.slots.chunk
+        self._generic_config_subs["timeslot_centered"] = self.slots.center
+        self._generic_config_subs["timeslot_centers"] = (
+            self.slots.as_centers_fromstart()
+        )
+
+
+class OOPSAnalysis(
+    OOPSODB,
+    OOPSTimestepDecoMixin,
+    OOPSIncrementalDecoMixin,
+    OOPSMemberDecoMixin,
+    OOPSMembersTermsDetectDecoMixin,
+):
     """Any kind of OOPS analysis (screening/thining step excluded)."""
 
     _footprint = dict(
-        info = "OOPS minimisation.",
-        attr = dict(
-            kind = dict(
-                values   = ['ooanalysis', 'oominim'],
-                remap    = dict(autoremap='first'),
+        info="OOPS minimisation.",
+        attr=dict(
+            kind=dict(
+                values=["ooanalysis", "oominim"],
+                remap=dict(autoremap="first"),
             ),
-            virtualdb = dict(
-                default  = 'ccma',
+            virtualdb=dict(
+                default="ccma",
             ),
             withscreening=dict(
-                values   = [False, ],
-                type     = bool,
-                optional = True,
-                default  = False,
+                values=[
+                    False,
+                ],
+                type=bool,
+                optional=True,
+                default=False,
             ),
-        )
+        ),
     )
 
 
@@ -723,13 +897,15 @@ class OOPSAnalysisWithScreening(OOPSAnalysis):
     _OOPSODB_CCMA_DIRECT = True
 
     _footprint = dict(
-        attr = dict(
-            virtualdb = dict(
-                default  = 'ecma',
+        attr=dict(
+            virtualdb=dict(
+                default="ecma",
             ),
-            withscreening = dict(
-                values   = [True, ],
-                optional = False,
+            withscreening=dict(
+                values=[
+                    True,
+                ],
+                optional=False,
             ),
         )
     )