vivarium-public-health 3.2.1__py3-none-any.whl → 4.0.0__py3-none-any.whl

vivarium_public_health/_version.py

@@ -1 +1 @@
-__version__ = "3.2.1"
+__version__ = "4.0.0"

vivarium_public_health/risks/implementations/low_birth_weight_and_short_gestation.py

@@ -202,6 +202,9 @@ class LBWSGRisk(Risk):
     @property
     def configuration_defaults(self) -> dict[str, Any]:
         configuration_defaults = super().configuration_defaults
+        configuration_defaults[self.name]["data_sources"][
+            "exposure"
+        ] = f"{self.risk}.birth_exposure"
         configuration_defaults[self.name]["distribution_type"] = "lbwsg"
         return configuration_defaults
 
@@ -371,11 +374,9 @@ class LBWSGRiskEffect(RiskEffect):
 
     def get_age_intervals(self, builder: Builder) -> dict[str, pd.Interval]:
         age_bins = builder.data.load("population.age_bins").set_index("age_start")
-        exposure = builder.data.load(f"{self.risk}.exposure")
-        exposure = exposure[exposure["age_end"] > 0]
-
+        relative_risks = builder.data.load(f"{self.risk}.relative_risk")
         exposed_age_group_starts = (
-            exposure.groupby("age_start")["value"].any().reset_index()["age_start"]
+            relative_risks.groupby("age_start")["value"].any().reset_index()["age_start"]
         )
 
         return {

{vivarium_public_health-3.2.1.dist-info → vivarium_public_health-4.0.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: vivarium_public_health
-Version: 3.2.1
+Version: 4.0.0
 Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
 Home-page: https://github.com/ihmeuw/vivarium_public_health
 Author: The vivarium developers

{vivarium_public_health-3.2.1.dist-info → vivarium_public_health-4.0.0.dist-info}/RECORD

@@ -1,6 +1,6 @@
 vivarium_public_health/__about__.py,sha256=RgWycPypKZS80TpSX7o41cREnG8PfguNHDHLuLyl820,487
 vivarium_public_health/__init__.py,sha256=GDeeP-7OlCBwPuv_xQoB1wNmvCaFsqfTB7qnnYApm0w,1343
-vivarium_public_health/_version.py,sha256=3BjxgoOdY8_gLUzv4upJn3tTpb8jX8wWqkC8k9jDva0,22
+vivarium_public_health/_version.py,sha256=SQa6Ci17DORmGXi_wkOW9pPlUojF-qtjH6NV1WOThsU,22
 vivarium_public_health/utilities.py,sha256=QNXQ6fhAr1HcV-GwKw7wQLz6QyuNxqNvMA-XujKjTgs,3035
 vivarium_public_health/disease/__init__.py,sha256=VUJHDLlE6ngo2qHNQUtZ8OWH5H_T7_ao-xsYKDkRmHw,443
 vivarium_public_health/disease/exceptions.py,sha256=vb30IIV82OiDf2cNZCs_E2rF6mdDDHbnZSND60no5CU,97
@@ -38,13 +38,13 @@ vivarium_public_health/risks/data_transformations.py,sha256=SgdPKc95BBqgMNUdlAQM
 vivarium_public_health/risks/distributions.py,sha256=a63-ihg2itxqgowDZbUix8soErxs_y8TRwsdtTCIUU4,18121
 vivarium_public_health/risks/effect.py,sha256=Cw-V1rMPaAPZsirbUElPzksvNuXLQc8TIIk0hgaFzvA,21259
 vivarium_public_health/risks/implementations/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-vivarium_public_health/risks/implementations/low_birth_weight_and_short_gestation.py,sha256=JkS9_33AzRBPRK9BpNvtBYg70cbh7wBi3dE7hBHbSNU,17781
+vivarium_public_health/risks/implementations/low_birth_weight_and_short_gestation.py,sha256=YVqPxaHbXaxAb4KK-cZP31XWbVgb8cOq92x6hkYgCVI,17868
 vivarium_public_health/treatment/__init__.py,sha256=wONElu9aJbBYwpYIovYPYaN_GYfVhPXtTeFWSdQMgA0,222
 vivarium_public_health/treatment/magic_wand.py,sha256=zGIhrNgB9q6JD7fHlvbDQb3H5e_N_QsROO4Y0kl_JQM,1955
 vivarium_public_health/treatment/scale_up.py,sha256=hVz0ELXDqlpcExI31rKdepxqcW_hy2hZSa6qCzv6udU,7020
 vivarium_public_health/treatment/therapeutic_inertia.py,sha256=8Z97s7GfcpfLu1U1ESJSqeEk4L__a3M0GbBV21MFg2s,2346
-vivarium_public_health-3.2.1.dist-info/LICENSE.txt,sha256=mN4bNLUQNcN9njYRc_3jCZkfPySVpmM6MRps104FxA4,1548
-vivarium_public_health-3.2.1.dist-info/METADATA,sha256=u7H5K7zUJj2RyV59wdbkZdvvEJ9TIvqXZQ4mnUX3W7s,4215
-vivarium_public_health-3.2.1.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
-vivarium_public_health-3.2.1.dist-info/top_level.txt,sha256=VVInlpzCFD0UNNhjOq_j-a29odzjwUwYFTGfvqbi4dY,23
-vivarium_public_health-3.2.1.dist-info/RECORD,,
+vivarium_public_health-4.0.0.dist-info/LICENSE.txt,sha256=mN4bNLUQNcN9njYRc_3jCZkfPySVpmM6MRps104FxA4,1548
+vivarium_public_health-4.0.0.dist-info/METADATA,sha256=Trgyi-Lpz9cJZS67GsOLqEzjUHGwEjfjk3fvSl-r7RE,4215
+vivarium_public_health-4.0.0.dist-info/WHEEL,sha256=52BFRY2Up02UkjOa29eZOS2VxUrpPORXg1pkohGGUS8,91
+vivarium_public_health-4.0.0.dist-info/top_level.txt,sha256=VVInlpzCFD0UNNhjOq_j-a29odzjwUwYFTGfvqbi4dY,23
+vivarium_public_health-4.0.0.dist-info/RECORD,,

{vivarium_public_health-3.2.1.dist-info → vivarium_public_health-4.0.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.8.0)
+Generator: setuptools (76.0.0)
 Root-Is-Purelib: true
 Tag: py3-none-any