vivarium-public-health 3.0.6__py3-none-any.whl → 3.0.8__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1 +1 @@
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- __version__ = "3.0.6"
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+ __version__ = "3.0.8"
@@ -7,7 +7,7 @@ This module contains tools to model transitions between disease states.
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  """
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- from typing import TYPE_CHECKING, Any, Callable, Dict, Union
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+ from typing import TYPE_CHECKING, Any, Callable, Dict, List, Optional, Union
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  import pandas as pd
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  from vivarium.framework.engine import Builder
@@ -48,6 +48,10 @@ class RateTransition(Transition):
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  },
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  }
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+ @property
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+ def columns_required(self) -> Optional[List[str]]:
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+ return ["alive"]
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+
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  @property
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  def transition_rate_pipeline_name(self) -> str:
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  if "incidence_rate" in self._get_data_functions:
@@ -100,8 +104,6 @@ class RateTransition(Transition):
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  preferred_post_processor=union_post_processor,
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  )
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- self.population_view = builder.population.get_view(["alive"])
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-
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  #################
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  # Setup methods #
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  #################
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: vivarium_public_health
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- Version: 3.0.6
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+ Version: 3.0.8
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  Summary: Components for modelling diseases, risks, and interventions with ``vivarium``
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  Home-page: https://github.com/ihmeuw/vivarium_public_health
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  Author: The vivarium developers
@@ -26,7 +26,7 @@ Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
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  Classifier: Topic :: Scientific/Engineering :: Physics
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  Classifier: Topic :: Software Development :: Libraries
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  License-File: LICENSE.txt
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- Requires-Dist: vivarium >=3.0.0
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+ Requires-Dist: vivarium >=3.0.3
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  Requires-Dist: layered-config-tree >=1.0.1
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  Requires-Dist: loguru
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  Requires-Dist: numpy <2.0.0
@@ -1,13 +1,13 @@
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  vivarium_public_health/__about__.py,sha256=RgWycPypKZS80TpSX7o41cREnG8PfguNHDHLuLyl820,487
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  vivarium_public_health/__init__.py,sha256=tomMOl3PI7O8GdxDWGBiBjT0Bwd31GpyQTYTzwIv108,361
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- vivarium_public_health/_version.py,sha256=uC8HeJcsNKDMSm12PYMv69I4zC6ciz4KILeBXWW_c8g,22
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+ vivarium_public_health/_version.py,sha256=t6JaFW2r7Vd60izKSV1CNQtiT1rd9_DbycKPMMs3QA8,22
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  vivarium_public_health/utilities.py,sha256=5cl9jjVkOQ1UeXT4DjDMAhaBNNjAsDo-SVJwpv6FDw0,3071
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  vivarium_public_health/disease/__init__.py,sha256=RuuiRcvAJfX9WQGt_WZZjxN7Cu3E5rMTmuaRS-UaFPM,419
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  vivarium_public_health/disease/model.py,sha256=0WIYDEx-hwlUJp6Zl8m8bUMoWxuVkOWsJvh_YlZiOPs,8234
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  vivarium_public_health/disease/models.py,sha256=01UK7yB2zGPFzmlIpvhd-XnGe6vSCMDza3QTidgY7Nc,3479
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  vivarium_public_health/disease/special_disease.py,sha256=3vS1WsO__IwOK0Oe_CUmh3aaKrXIf2CANtmiqlS3pjc,14614
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  vivarium_public_health/disease/state.py,sha256=PUSDE1UlvoCPT6jPEyCTQO1bXjjYxqzdIa6-Bxpd-7I,22370
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- vivarium_public_health/disease/transition.py,sha256=ZxYXZBo2EEXzuQCbaj2pHTyj61hYkdqBH1ce2Htdnb4,6412
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+ vivarium_public_health/disease/transition.py,sha256=fgeVMy86GLrNpZ3J9E4AC0iA5z3aVdP0ZQ0AWa_odTY,6452
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  vivarium_public_health/mslt/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  vivarium_public_health/mslt/delay.py,sha256=aOYjMpMSHEVlJs0FuC2gdq3uj6_vKmkhDjoBtC4i9G0,22812
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  vivarium_public_health/mslt/disease.py,sha256=TBqa7yj6k1oUbgkAe0rIgLpbdMLMFs4DiZ1Igi2BQBg,16663
@@ -42,8 +42,8 @@ vivarium_public_health/treatment/__init__.py,sha256=wONElu9aJbBYwpYIovYPYaN_GYfV
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  vivarium_public_health/treatment/magic_wand.py,sha256=i9N57-MEuQv5B6dQ5iVMTAdOPghYcgiRRz-dTzigf1s,1980
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  vivarium_public_health/treatment/scale_up.py,sha256=aKJmZ2G6N80n7oPkJM8IpqZOhftUBkAMBn4hR4EZzhE,7015
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  vivarium_public_health/treatment/therapeutic_inertia.py,sha256=8Z97s7GfcpfLu1U1ESJSqeEk4L__a3M0GbBV21MFg2s,2346
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- vivarium_public_health-3.0.6.dist-info/LICENSE.txt,sha256=mN4bNLUQNcN9njYRc_3jCZkfPySVpmM6MRps104FxA4,1548
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- vivarium_public_health-3.0.6.dist-info/METADATA,sha256=9R6AnfAPIZppi65fLRkAEMGemyS-yognH2oN1U9zS_g,4061
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- vivarium_public_health-3.0.6.dist-info/WHEEL,sha256=uCRv0ZEik_232NlR4YDw4Pv3Ajt5bKvMH13NUU7hFuI,91
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- vivarium_public_health-3.0.6.dist-info/top_level.txt,sha256=VVInlpzCFD0UNNhjOq_j-a29odzjwUwYFTGfvqbi4dY,23
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- vivarium_public_health-3.0.6.dist-info/RECORD,,
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+ vivarium_public_health-3.0.8.dist-info/LICENSE.txt,sha256=mN4bNLUQNcN9njYRc_3jCZkfPySVpmM6MRps104FxA4,1548
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+ vivarium_public_health-3.0.8.dist-info/METADATA,sha256=shnXq_LcxkxGy5qfx_3Kv1mF7Q8WCUhEIgziwNJPeXs,4061
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+ vivarium_public_health-3.0.8.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
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+ vivarium_public_health-3.0.8.dist-info/top_level.txt,sha256=VVInlpzCFD0UNNhjOq_j-a29odzjwUwYFTGfvqbi4dY,23
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+ vivarium_public_health-3.0.8.dist-info/RECORD,,
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (74.1.1)
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+ Generator: setuptools (74.1.2)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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