vitessce 3.6.3__py3-none-any.whl → 3.6.5__py3-none-any.whl

vitessce/widget.py

@@ -163,7 +163,7 @@ const { createRoot } = await importWithMap("react-dom/client", importMap);
 const e = React.createElement;
 
 function isAbsoluteUrl(s) {
-    return s.startsWith('http://') || s.startsWith('https://');
+    return s?.startsWith('http://') || s?.startsWith('https://');
 }
 const WORKSPACES_URL_KEYWORD = 'https://workspaces-pt';
 const OPTIONS_URL_KEYS = ['offsetsUrl', 'refSpecUrl'];
@@ -201,7 +201,7 @@ function prependBaseUrl(config, proxy, hasHostName) {
             ...d,
             files: d.files.map(f => {
                 const updatedFileDef = { ...f };
-                if (!isAbsoluteUrl(f.url)) {
+                if (f.url && !isAbsoluteUrl(f.url) ) {
                     // Update the main file URL if necessary.
                     updatedFileDef.url = `${origin}${baseUrl}${f.url}`;
                 }
@@ -214,6 +214,28 @@ function prependBaseUrl(config, proxy, hasHostName) {
                             updatedOptions[key] = `${origin}${baseUrl}${optionValue}`;
                         }
                     });
+
+                    // Update image URLs if they exist
+                    if ('images' in f.options && Array.isArray(f.options.images)) {
+                        const updatedImages = f.options.images.map(image => {
+                            const updatedImage = { ...image };
+
+                            if (image.url && !isAbsoluteUrl(image.url)) {
+                                updatedImage.url = `${origin}${baseUrl}${image.url}`;
+                            }
+
+                            const metadata = { ...image.metadata };
+                            if (metadata?.omeTiffOffsetsUrl && !isAbsoluteUrl(metadata.omeTiffOffsetsUrl)) {
+                                metadata.omeTiffOffsetsUrl = `${origin}${baseUrl}${metadata.omeTiffOffsetsUrl}`;
+                            }
+
+                            updatedImage.metadata = metadata;
+
+                            return updatedImage;
+                        });
+
+                        updatedOptions.images = updatedImages;
+                    }
                     updatedFileDef.options = updatedOptions;
                 }
                 return updatedFileDef;
@@ -601,7 +623,7 @@ class VitessceWidget(anywidget.AnyWidget):
 
     next_port = DEFAULT_PORT
 
-    js_package_version = Unicode('3.6.4').tag(sync=True)
+    js_package_version = Unicode('3.6.6').tag(sync=True)
     js_dev_mode = Bool(False).tag(sync=True)
     custom_js_url = Unicode('').tag(sync=True)
     plugin_esm = List(trait=Unicode(''), default_value=[]).tag(sync=True)
@@ -614,7 +636,7 @@ class VitessceWidget(anywidget.AnyWidget):
 
     store_urls = List(trait=Unicode(''), default_value=[]).tag(sync=True)
 
-    def __init__(self, config, height=600, theme='auto', uid=None, port=None, proxy=False, js_package_version='3.6.4', js_dev_mode=False, custom_js_url='', plugins=None, remount_on_uid_change=True, prefer_local=True, invoke_timeout=300000, invoke_batched=True, page_mode=False, page_esm=None, prevent_scroll=True):
+    def __init__(self, config, height=600, theme='auto', uid=None, port=None, proxy=False, js_package_version='3.6.6', js_dev_mode=False, custom_js_url='', plugins=None, remount_on_uid_change=True, prefer_local=True, invoke_timeout=300000, invoke_batched=True, page_mode=False, page_esm=None, prevent_scroll=True):
         """
         Construct a new Vitessce widget.
 
@@ -750,7 +772,7 @@ class VitessceWidget(anywidget.AnyWidget):
 # Launch Vitessce using plain HTML representation (no ipywidgets)
 
 
-def ipython_display(config, height=600, theme='auto', base_url=None, host_name=None, uid=None, port=None, proxy=False, js_package_version='3.6.4', js_dev_mode=False, custom_js_url='', plugins=None, remount_on_uid_change=True, page_mode=False, page_esm=None):
+def ipython_display(config, height=600, theme='auto', base_url=None, host_name=None, uid=None, port=None, proxy=False, js_package_version='3.6.6', js_dev_mode=False, custom_js_url='', plugins=None, remount_on_uid_change=True, page_mode=False, page_esm=None):
     from IPython.display import display, HTML
     uid_str = "vitessce" + get_uid_str(uid)
 

{vitessce-3.6.3.dist-info → vitessce-3.6.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: vitessce
-Version: 3.6.3
+Version: 3.6.5
 Summary: Jupyter widget facilitating interactive visualization of spatial single-cell data with Vitessce
 Project-URL: repository, https://github.com/vitessce/vitessce-python
 Author-email: Mark Keller <mark_keller@hms.harvard.edu>

{vitessce-3.6.3.dist-info → vitessce-3.6.5.dist-info}/RECORD

@@ -8,7 +8,7 @@ vitessce/repr.py,sha256=qMmefmZ3E-3sRVxeI5q1DTZnfuwbXKiA85eyqk5MCT4,2287
 vitessce/responses.py,sha256=Z6Wo4AXN-RyzmxMPhSuhpIsHTItHM4GyIgMLGoVEYcU,339
 vitessce/routes.py,sha256=U8T-L-3QCD_tAbPF8LsUlSMhPWNbyzbLNUnxP9Z9s9o,2140
 vitessce/utils.py,sha256=obzjj65qsagu60_yuhGc-0jmHO-BW0Y-bDs0FgrBqLY,981
-vitessce/widget.py,sha256=OX9L6mnliYh2j5jQo_BcDYRCgccdYpgJqEOQzybZQ9I,33543
+vitessce/widget.py,sha256=mTAXQR8QWPLwqQUSb077CF0CFUvrRpUDSpojsxQ8IBc,34575
 vitessce/wrappers.py,sha256=garL6KfL5hEqGBQpf3NV_ZsZhaV_-RN1GrCmA1Fc_1I,75557
 vitessce/data_utils/__init__.py,sha256=3mWi1lMjoj4_dNbhMOvyE-HEJu0qpMzcmkhfz_5T6n8,361
 vitessce/data_utils/anndata.py,sha256=iLa5-bRezHgBzL_XCHO7w0pc0RQ4urzZbDsqJbBYeCk,10668
@@ -18,7 +18,7 @@ vitessce/data_utils/ome.py,sha256=tJHlSHbZTxpjRgYfTxbYMS9zSnSHQwJVWPZpREAvHtU,55
 vitessce/widget_plugins/__init__.py,sha256=lto2GXnc7KwjIoT-jvzyRYLj0XTJG3uxoX45Hc9EcWA,82
 vitessce/widget_plugins/demo_plugin.py,sha256=14S7nOxdlKSxIHw9DUcNCN83NE_U1EMPy2D4k0FDues,1797
 vitessce/widget_plugins/spatial_query.py,sha256=CYxvmMT1Je_jguikPROQxlegkPgIIzemKGbZSJfZMyI,12314
-vitessce-3.6.3.dist-info/METADATA,sha256=P0ImyRQlP8PlT9aJJfVJRMyJG3AvDF7FyYmoR-orMko,9826
-vitessce-3.6.3.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-vitessce-3.6.3.dist-info/licenses/LICENSE,sha256=sNNpI0PQ57AW8_XnTAjU5Yw8YBA_DRNkVHrHYpCIhRU,1067
-vitessce-3.6.3.dist-info/RECORD,,
+vitessce-3.6.5.dist-info/METADATA,sha256=k03oHmlKb_vZcnUwjHPovPxbUMikMSwSL365aX2dVdM,9826
+vitessce-3.6.5.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+vitessce-3.6.5.dist-info/licenses/LICENSE,sha256=sNNpI0PQ57AW8_XnTAjU5Yw8YBA_DRNkVHrHYpCIhRU,1067
+vitessce-3.6.5.dist-info/RECORD,,