vitessce 3.5.7__py3-none-any.whl → 3.5.9__py3-none-any.whl

vitessce/widget.py

@@ -163,7 +163,12 @@ const React = await importWithMap("react", importMap);
 const { createRoot } = await importWithMap("react-dom/client", importMap);
 
 const e = React.createElement;
+
+function isAbsoluteUrl(s) {
+    return s.startsWith('http://') || s.startsWith('https://');
+}
 const WORKSPACES_URL_KEYWORD = 'https://workspaces-pt';
+const OPTIONS_URL_KEYS = ['offsetsUrl', 'refSpecUrl'];
 const prefersDark = window.matchMedia && window.matchMedia('(prefers-color-scheme: dark)').matches;
 // The jupyter server may be running through a proxy,
 // which means that the client needs to prepend the part of the URL before /proxy/8000 such as
@@ -196,13 +201,25 @@ function prependBaseUrl(config, proxy, hasHostName) {
         ...config,
         datasets: config.datasets.map(d => ({
             ...d,
-            files: d.files.map(f => ({
-                ...f,
-                url: (!(f.url.startsWith('http://') || f.url.startsWith('https://'))
-                    ? `${origin}${baseUrl}${f.url}`
-                    : f.url
-                ),
-            })),
+            files: d.files.map(f => {
+                const updatedFileDef = { ...f };
+                if (!isAbsoluteUrl(f.url)) {
+                    // Update the main file URL if necessary.
+                    updatedFileDef.url = `${origin}${baseUrl}${f.url}`;
+                }
+                if (f.options) {
+                    // Update any urls within the options object
+                    const updatedOptions = { ...f.options };
+                    OPTIONS_URL_KEYS.forEach(key => {
+                        const optionValue = updatedOptions[key];
+                        if (optionValue && !isAbsoluteUrl(optionValue)) {
+                            updatedOptions[key] = `${origin}${baseUrl}${optionValue}`;
+                        }
+                    });
+                    updatedFileDef.options = updatedOptions;
+                }
+                return updatedFileDef;
+            }),
         })),
     };
 }
@@ -578,7 +595,7 @@ class VitessceWidget(anywidget.AnyWidget):
 
     next_port = DEFAULT_PORT
 
-    js_package_version = Unicode('3.5.11').tag(sync=True)
+    js_package_version = Unicode('3.5.12').tag(sync=True)
     js_dev_mode = Bool(False).tag(sync=True)
     custom_js_url = Unicode('').tag(sync=True)
     plugin_esm = List(trait=Unicode(''), default_value=[]).tag(sync=True)
@@ -589,7 +606,7 @@ class VitessceWidget(anywidget.AnyWidget):
 
     store_urls = List(trait=Unicode(''), default_value=[]).tag(sync=True)
 
-    def __init__(self, config, height=600, theme='auto', uid=None, port=None, proxy=False, js_package_version='3.5.11', js_dev_mode=False, custom_js_url='', plugins=None, remount_on_uid_change=True, prefer_local=True, invoke_timeout=300000, page_mode=False, page_esm=None):
+    def __init__(self, config, height=600, theme='auto', uid=None, port=None, proxy=False, js_package_version='3.5.12', js_dev_mode=False, custom_js_url='', plugins=None, remount_on_uid_change=True, prefer_local=True, invoke_timeout=300000, page_mode=False, page_esm=None):
         """
         Construct a new Vitessce widget.
 
@@ -723,7 +740,7 @@ class VitessceWidget(anywidget.AnyWidget):
 # Launch Vitessce using plain HTML representation (no ipywidgets)
 
 
-def ipython_display(config, height=600, theme='auto', base_url=None, host_name=None, uid=None, port=None, proxy=False, js_package_version='3.5.11', js_dev_mode=False, custom_js_url='', plugins=None, remount_on_uid_change=True, page_mode=False, page_esm=None):
+def ipython_display(config, height=600, theme='auto', base_url=None, host_name=None, uid=None, port=None, proxy=False, js_package_version='3.5.12', js_dev_mode=False, custom_js_url='', plugins=None, remount_on_uid_change=True, page_mode=False, page_esm=None):
     from IPython.display import display, HTML
     uid_str = "vitessce" + get_uid_str(uid)
 

{vitessce-3.5.7.dist-info → vitessce-3.5.9.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: vitessce
-Version: 3.5.7
+Version: 3.5.9
 Summary: Jupyter widget facilitating interactive visualization of spatial single-cell data with Vitessce
 Project-URL: repository, https://github.com/vitessce/vitessce-python
 Author-email: Mark Keller <mark_keller@hms.harvard.edu>
@@ -102,7 +102,7 @@ Python API and Jupyter widget facilitating interactive visualization of spatial
 
 To install with pip:
 
-    $ pip install vitessce[all]
+    $ pip install 'vitessce[all]'
 
 ## Getting started
 

{vitessce-3.5.7.dist-info → vitessce-3.5.9.dist-info}/RECORD

@@ -7,7 +7,7 @@ vitessce/file_def_utils.py,sha256=RM9Hj1uwPY-Y37JLOHiKA_acGY40p8C9WsDk8iVjDz8,66
 vitessce/repr.py,sha256=qMmefmZ3E-3sRVxeI5q1DTZnfuwbXKiA85eyqk5MCT4,2287
 vitessce/routes.py,sha256=U8T-L-3QCD_tAbPF8LsUlSMhPWNbyzbLNUnxP9Z9s9o,2140
 vitessce/utils.py,sha256=obzjj65qsagu60_yuhGc-0jmHO-BW0Y-bDs0FgrBqLY,981
-vitessce/widget.py,sha256=1E1PGs656B7AGLdE6qAGlJ63zcH7aBFi1bOS0sMkYks,31623
+vitessce/widget.py,sha256=-8zK7h3AeFU8VWncuPWR2vAA8StHWYNjbrwVm5ld03w,32418
 vitessce/wrappers.py,sha256=kVqXFcpbuIb8MtZQSB4F7k32JM8bwCgMBrOkcAAhmvc,74676
 vitessce/data_utils/__init__.py,sha256=3mWi1lMjoj4_dNbhMOvyE-HEJu0qpMzcmkhfz_5T6n8,361
 vitessce/data_utils/anndata.py,sha256=iLa5-bRezHgBzL_XCHO7w0pc0RQ4urzZbDsqJbBYeCk,10668
@@ -17,7 +17,7 @@ vitessce/data_utils/ome.py,sha256=aK-iGNgjUmUMsWgdZhW78VrtMBKMW_jIQDYnsupq6BE,54
 vitessce/widget_plugins/__init__.py,sha256=lto2GXnc7KwjIoT-jvzyRYLj0XTJG3uxoX45Hc9EcWA,82
 vitessce/widget_plugins/demo_plugin.py,sha256=14S7nOxdlKSxIHw9DUcNCN83NE_U1EMPy2D4k0FDues,1797
 vitessce/widget_plugins/spatial_query.py,sha256=CYxvmMT1Je_jguikPROQxlegkPgIIzemKGbZSJfZMyI,12314
-vitessce-3.5.7.dist-info/METADATA,sha256=EbK58qfEkCzquClPc-XIIvNBcgUhQgarf-qEaX0THW4,9556
-vitessce-3.5.7.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-vitessce-3.5.7.dist-info/licenses/LICENSE,sha256=sNNpI0PQ57AW8_XnTAjU5Yw8YBA_DRNkVHrHYpCIhRU,1067
-vitessce-3.5.7.dist-info/RECORD,,
+vitessce-3.5.9.dist-info/METADATA,sha256=g_LIqo1wtjJamdEcoUuyv7di45t_X0MhleRnSianTTQ,9558
+vitessce-3.5.9.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+vitessce-3.5.9.dist-info/licenses/LICENSE,sha256=sNNpI0PQ57AW8_XnTAjU5Yw8YBA_DRNkVHrHYpCIhRU,1067
+vitessce-3.5.9.dist-info/RECORD,,